Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47380 * 2 1 4 4 H 1.09007 * 109.47147 * 306.62660 * 3 2 1 5 5 C 1.50705 * 109.47266 * 186.63000 * 3 2 1 6 6 H 1.07994 * 120.00308 * 242.75041 * 5 3 2 7 7 C 1.37883 * 119.99659 * 62.75198 * 5 3 2 8 8 N 1.31509 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46969 * 89.99655 * 9 7 5 11 11 H 1.48501 * 109.47158 * 209.99643 * 9 7 5 12 12 H 1.48494 * 109.47296 * 329.99739 * 9 7 5 13 13 N 1.46899 * 109.47299 * 66.62959 * 3 2 1 14 14 C 1.46901 * 111.00199 * 207.91543 * 13 3 2 15 15 H 1.09004 * 110.01162 * 315.76717 * 14 13 3 16 16 C 1.53874 * 110.03460 * 77.15983 * 14 13 3 17 17 C 1.54265 * 106.59611 * 119.28243 * 16 14 13 18 18 C 1.54892 * 104.19675 * 23.61447 * 17 16 14 19 19 C 1.54265 * 110.03147 * 194.32804 * 14 13 3 20 20 H 1.08999 * 110.48697 * 335.78790 * 19 14 13 21 21 N 1.46910 * 110.48520 * 98.42701 * 19 14 13 22 22 C 1.47013 * 110.99751 * 294.81013 * 21 19 14 23 23 C 1.53094 * 109.25608 * 177.60965 * 22 21 19 24 24 O 1.43019 * 109.26195 * 56.84586 * 23 22 21 25 25 C 1.43019 * 113.73478 * 301.33060 * 24 23 22 26 26 C 1.47015 * 110.99920 * 171.17366 * 21 19 14 27 27 H 1.09003 * 109.47203 * 294.52308 * 1 2 3 28 28 H 1.09009 * 109.46979 * 54.51619 * 1 2 3 29 29 H 1.08996 * 109.47190 * 174.51880 * 1 2 3 30 30 H 1.09004 * 109.47172 * 120.00314 * 2 1 3 31 31 H 1.09000 * 109.46903 * 239.99844 * 2 1 3 32 32 H 0.97006 * 119.99435 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99781 * 331.87091 * 13 3 2 34 34 H 1.08997 * 110.03577 * 238.57237 * 16 14 13 35 35 H 1.09004 * 110.02614 * 359.95346 * 16 14 13 36 36 H 1.09006 * 110.48251 * 142.28928 * 17 16 14 37 37 H 1.09003 * 110.48713 * 264.93058 * 17 16 14 38 38 H 1.08999 * 110.75364 * 80.37047 * 18 17 16 39 39 H 1.09000 * 110.75601 * 203.55507 * 18 17 16 40 40 H 1.09003 * 109.50327 * 297.53932 * 22 21 19 41 41 H 1.09000 * 109.51085 * 57.67323 * 22 21 19 42 42 H 1.09001 * 109.51065 * 296.91364 * 23 22 21 43 43 H 1.09005 * 109.51076 * 176.77938 * 23 22 21 44 44 H 1.08993 * 109.50533 * 298.73233 * 25 24 23 45 45 H 1.09004 * 109.54245 * 178.62133 * 25 24 23 46 46 H 1.09000 * 109.50329 * 302.32646 * 26 21 19 47 47 H 1.09000 * 109.50674 * 62.41089 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 1.9894 -0.8248 5 6 3.5381 1.4456 -0.1640 6 1 4.1664 1.8426 0.6195 7 6 4.1067 0.9415 -1.3147 8 7 3.3416 0.4577 -2.2686 9 14 5.9636 0.9448 -1.5177 10 1 6.5222 -0.3229 -0.9828 11 1 6.3038 1.0669 -2.9580 12 1 6.5409 2.0929 -0.7737 13 7 1.6853 2.0873 1.2713 14 6 1.5345 3.5386 1.1015 15 1 2.3503 3.9298 0.4935 16 6 0.1833 3.8539 0.4363 17 6 -0.6048 4.7291 1.4327 18 6 0.4894 5.3776 2.3166 19 6 1.5204 4.2332 2.4788 20 1 1.1992 3.5373 3.2538 21 7 2.8480 4.7780 2.7935 22 6 3.8362 3.7007 2.9491 23 6 5.2134 4.3136 3.2163 24 8 5.1403 5.1525 4.3724 25 6 4.1878 6.2129 4.2548 26 6 2.8002 5.6192 3.9982 27 1 -0.3634 0.4266 0.9350 28 1 -0.3633 0.5966 -0.8369 29 1 -0.3633 -1.0229 -0.0982 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.7417 0.1027 -3.0779 33 1 0.8490 1.6801 1.6623 34 1 0.3432 4.3989 -0.4940 35 1 -0.3602 2.9299 0.2388 36 1 -1.1708 5.4952 0.9028 37 1 -1.2693 4.1132 2.0387 38 1 0.9378 6.2328 1.8109 39 1 0.0806 5.6729 3.2829 40 1 3.5521 3.0646 3.7874 41 1 3.8733 3.1061 2.0363 42 1 5.5212 4.9069 2.3552 43 1 5.9385 3.5183 3.3891 44 1 4.4658 6.8612 3.4239 45 1 4.1709 6.7918 5.1783 46 1 2.0811 6.4250 3.8512 47 1 2.4988 5.0139 4.8531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -50.264994 kcal Electronic energy + Delta-G solvation = -24378.906556 eV Core-core repulsion = 21174.892787 eV Total energy + Delta-G solvation = -3204.013769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.66255 -38.02878 -35.58971 -34.16780 -32.06786 -31.14866 -30.48279 -28.34897 -27.21967 -25.76578 -24.62605 -23.64227 -22.64192 -20.49710 -20.15899 -19.34086 -19.23528 -16.69612 -16.14624 -15.81228 -15.48213 -14.86588 -14.70290 -14.64331 -14.49763 -13.98225 -13.75426 -13.48005 -13.09353 -12.76468 -12.49193 -12.20978 -11.94462 -11.58440 -11.51112 -11.25449 -11.11683 -11.08445 -10.92857 -10.80040 -10.64398 -10.57478 -10.52133 -10.25611 -10.10468 -9.88236 -9.69128 -9.49644 -9.32619 -9.06023 -8.33353 -8.02133 -7.18198 -5.96171 -3.99501 3.32912 3.39899 3.42963 3.98722 4.15914 4.45515 4.83044 4.91293 5.12090 5.18714 5.30457 5.32196 5.33789 5.44639 5.55126 5.61544 5.73161 5.75214 5.83851 5.88156 5.90158 5.95953 6.01582 6.07596 6.10577 6.13686 6.16758 6.24188 6.33817 6.38514 6.51167 6.52765 6.63308 6.78084 6.83658 7.08420 7.18889 7.28575 7.39603 7.47381 7.54086 7.76283 7.94842 8.33243 8.40564 8.77255 9.08658 9.65477 11.09820 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.007080 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.394724 B = 3953.642993 C = 5558.065033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.220 3.780 4 H 0.008 0.992 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.101 3.899 15 H 0.094 0.906 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.118 4.118 19 C 0.091 3.909 20 H 0.047 0.953 21 N -0.524 5.524 22 C 0.018 3.982 23 C 0.062 3.938 24 O -0.393 6.393 25 C 0.066 3.934 26 C 0.016 3.984 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.258 0.742 33 H 0.315 0.685 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 8.964 9.389 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.113 3.887 4 H 0.025 0.975 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.010 4.010 15 H 0.112 0.888 16 C -0.192 4.192 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.018 4.018 20 H 0.065 0.935 21 N -0.249 5.249 22 C -0.109 4.109 23 C -0.015 4.015 24 O -0.312 6.312 25 C -0.012 4.012 26 C -0.112 4.112 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.140 0.860 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.752 9.164 9.182 13.504 hybrid contribution -0.388 -0.548 -0.289 0.731 sum -4.141 8.616 8.893 13.056 Atomic orbital electron populations 1.21885 0.99622 0.99635 0.99507 1.21758 0.91248 1.00692 1.02588 1.19133 0.95429 0.89645 0.84498 0.97473 1.21207 0.91319 1.38786 1.01582 0.92016 1.24946 0.97769 0.95767 0.95979 1.69898 1.34487 1.41797 1.07391 0.86625 0.86124 0.78381 0.77045 1.20877 1.21525 1.19850 1.60821 1.38467 1.01226 1.30632 1.22075 0.95781 0.89739 0.93452 0.88793 1.22910 0.97760 0.99758 0.98737 1.22264 0.97229 0.98692 0.97609 1.22549 0.95695 0.98244 0.99111 1.22519 0.87223 0.94389 0.97623 0.93535 1.62286 1.07127 1.21689 1.33810 1.22917 0.90959 0.92954 1.04102 1.22759 0.97146 0.93713 0.87864 1.87929 1.60111 1.43039 1.40089 1.22584 0.87659 0.89511 1.01403 1.22756 0.98203 0.98053 0.92226 0.94681 0.93835 0.94519 0.94183 0.88855 0.93167 0.86729 0.92036 0.91869 0.92150 0.92200 0.90707 0.92434 0.94542 0.85981 0.92494 0.88716 0.92630 0.89262 0.90134 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.67 37.16 0.36 -2.44 16 2 C -0.12 -2.82 5.35 -26.73 -0.14 -2.96 16 3 C 0.22 5.15 1.73 -68.86 -0.12 5.03 16 4 H 0.01 0.20 7.32 -51.93 -0.38 -0.18 16 5 C -0.49 -12.83 8.62 -34.44 -0.30 -13.13 16 6 H 0.06 1.62 6.01 -52.49 -0.32 1.31 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.03 11.50 55.43 0.64 -24.39 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.40 5.24 -99.78 -0.52 -13.92 16 14 C 0.10 1.80 1.83 -66.59 -0.12 1.68 16 15 H 0.09 1.98 7.72 -51.93 -0.40 1.58 16 16 C -0.15 -2.42 5.80 -25.61 -0.15 -2.56 16 17 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 18 C -0.12 -1.51 5.04 -24.74 -0.12 -1.63 16 19 C 0.09 1.40 2.28 -66.05 -0.15 1.25 16 20 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 21 N -0.52 -8.12 4.55 -224.35 -1.02 -9.14 16 22 C 0.02 0.31 5.41 -3.71 -0.02 0.29 16 23 C 0.06 0.96 7.01 37.21 0.26 1.22 16 24 O -0.39 -6.03 10.83 -35.23 -0.38 -6.41 16 25 C 0.07 0.83 7.01 37.21 0.26 1.09 16 26 C 0.02 0.21 5.39 -3.71 -0.02 0.19 16 27 H 0.03 0.59 6.70 -51.93 -0.35 0.24 16 28 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.32 5.84 6.38 -39.29 -0.25 5.59 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.12 2.44 4.88 -51.93 -0.25 2.18 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.91 6.81 -51.93 -0.35 0.56 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -27.02 350.00 -10.04 -37.06 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.48 Total: 7.72 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.53 Total: -12.27 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.91 Total: -47.46 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.38 Total: -6.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.02 -10.04 -37.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.204 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds