Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 H 1.08992 * 109.47422 * 53.97637 * 3 2 1 5 5 C 1.50703 * 109.47014 * 173.97603 * 3 2 1 6 6 H 1.07995 * 120.00330 * 117.06522 * 5 3 2 7 7 C 1.37882 * 119.99795 * 297.06688 * 5 3 2 8 8 N 1.31513 * 120.00072 * 351.55761 * 7 5 3 9 9 Si 1.86802 * 119.99823 * 171.55554 * 7 5 3 10 10 H 1.48506 * 109.46910 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47503 * 299.99797 * 9 7 5 12 12 H 1.48505 * 109.47144 * 60.00329 * 9 7 5 13 13 N 1.46901 * 109.46971 * 293.96882 * 3 2 1 14 14 C 1.46901 * 110.99423 * 142.82302 * 13 3 2 15 15 C 1.52998 * 109.47191 * 294.19943 * 14 13 3 16 16 C 1.52993 * 109.47592 * 54.20440 * 14 13 3 17 17 C 1.53004 * 109.46839 * 174.20101 * 14 13 3 18 18 C 1.50698 * 109.47113 * 179.97438 * 17 14 13 19 19 O 1.21284 * 120.00120 * 0.02562 * 18 17 14 20 20 N 1.34783 * 120.00008 * 180.02562 * 18 17 14 21 21 C 1.47013 * 125.64728 * 359.69218 * 20 18 17 22 22 C 1.54319 * 107.27601 * 180.97033 * 21 20 18 23 23 C 1.55156 * 102.86138 * 22.52338 * 22 21 20 24 24 C 1.47424 * 125.64582 * 180.02562 * 20 18 17 25 25 H 1.08995 * 109.46748 * 305.06923 * 1 2 3 26 26 H 1.08995 * 109.47130 * 65.06736 * 1 2 3 27 27 H 1.09000 * 109.47007 * 185.07335 * 1 2 3 28 28 H 1.08999 * 109.47219 * 240.00177 * 2 1 3 29 29 H 1.09001 * 109.47347 * 119.99570 * 2 1 3 30 30 H 0.97003 * 119.99710 * 356.35291 * 8 7 5 31 31 H 1.00899 * 111.00276 * 266.77470 * 13 3 2 32 32 H 1.09000 * 109.47272 * 65.54159 * 15 14 13 33 33 H 1.09005 * 109.47228 * 185.53842 * 15 14 13 34 34 H 1.09004 * 109.47422 * 305.53512 * 15 14 13 35 35 H 1.09001 * 109.47376 * 64.82863 * 16 14 13 36 36 H 1.08999 * 109.47570 * 184.83286 * 16 14 13 37 37 H 1.09009 * 109.47254 * 304.83414 * 16 14 13 38 38 H 1.08995 * 109.47301 * 300.00268 * 17 14 13 39 39 H 1.09006 * 109.47053 * 59.99978 * 17 14 13 40 40 H 1.09006 * 109.88486 * 300.51238 * 21 20 18 41 41 H 1.09003 * 109.88282 * 61.68308 * 21 20 18 42 42 H 1.09006 * 110.92156 * 264.11378 * 22 21 20 43 43 H 1.09004 * 110.59171 * 140.78684 * 22 21 20 44 44 H 1.08995 * 111.00536 * 206.22481 * 23 22 21 45 45 H 1.09002 * 110.99910 * 82.38107 * 23 22 21 46 46 H 1.08997 * 110.37015 * 274.67098 * 24 20 18 47 47 H 1.09003 * 110.36933 * 36.88864 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5913 1.9865 0.8311 5 6 3.5396 1.4452 0.1491 6 1 4.1601 1.8423 -0.6406 7 6 4.1194 0.9406 1.2938 8 7 3.3677 0.6110 2.3214 9 14 5.9727 0.7249 1.3849 10 1 6.3418 0.1700 2.7120 11 1 6.4157 -0.2075 0.3175 12 1 6.6340 2.0414 1.1982 13 7 1.6727 2.0917 -1.2656 14 6 1.3100 3.4987 -1.0495 15 6 0.0319 3.5731 -0.2118 16 6 2.4455 4.2107 -0.3117 17 6 1.0747 4.1779 -2.4002 18 6 0.7020 5.6211 -2.1786 19 8 0.6319 6.0632 -1.0513 20 7 0.4465 6.4208 -3.2331 21 6 0.5006 6.0188 -4.6462 22 6 0.1590 7.2645 -5.4904 23 6 0.4940 8.4356 -4.5294 24 6 0.0731 7.8451 -3.1607 25 1 -0.3633 0.5904 0.8411 26 1 -0.3633 0.4332 -0.9318 27 1 -0.3633 -1.0236 0.0909 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.4116 0.7721 2.2943 31 1 2.4159 2.0098 -1.9430 32 1 0.2273 3.1780 0.7851 33 1 -0.2919 4.6110 -0.1342 34 1 -0.7505 2.9833 -0.6894 35 1 3.3325 4.2328 -0.9448 36 1 2.1422 5.2306 -0.0755 37 1 2.6710 3.6758 0.6109 38 1 1.9851 4.1249 -2.9971 39 1 0.2656 3.6707 -2.9259 40 1 1.5017 5.6647 -4.8928 41 1 -0.2302 5.2327 -4.8363 42 1 -0.8977 7.2755 -5.7581 43 1 0.7843 7.3065 -6.3823 44 1 -0.0951 9.3202 -4.7712 45 1 1.5601 8.6616 -4.5458 46 1 -1.0025 7.9486 -3.0178 47 1 0.6118 8.3379 -2.3513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -43.972471 kcal Electronic energy + Delta-G solvation = -23830.430461 eV Core-core repulsion = 20626.689556 eV Total energy + Delta-G solvation = -3203.740905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24315 -38.19608 -36.84715 -34.03702 -31.97510 -31.41835 -29.74118 -29.09196 -27.51788 -26.38419 -25.45632 -23.56999 -22.81418 -21.48222 -20.19096 -19.15222 -18.30718 -17.12512 -16.98633 -16.69639 -15.22130 -14.91081 -14.55562 -13.88007 -13.75938 -13.72021 -13.59727 -13.45614 -13.08801 -12.89334 -12.61336 -12.36590 -12.12186 -11.79452 -11.66282 -11.51213 -11.38158 -11.15954 -11.04376 -10.94242 -10.84884 -10.68785 -10.43586 -10.33586 -10.12527 -10.05450 -9.73678 -9.57490 -9.19781 -8.69949 -8.65198 -8.21261 -7.21163 -6.26316 -4.00876 2.77800 2.94699 3.45460 3.46382 3.64925 4.21364 4.29964 4.56682 4.58470 4.85700 4.98149 5.08448 5.22087 5.34750 5.36429 5.40573 5.41124 5.52952 5.58203 5.61909 5.72206 5.83486 5.84668 6.03512 6.18823 6.25892 6.27956 6.33198 6.52088 6.61950 6.65797 6.74180 6.86730 6.95812 6.98434 7.04651 7.29070 7.36680 7.44324 7.54003 7.68618 8.05979 8.13895 8.34034 8.56009 8.70847 8.90690 9.69269 11.06452 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.004237 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.675145 B = 6607.392147 C = 7108.420304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.203 3.797 4 H 0.030 0.970 5 C -0.614 4.614 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 1.058 2.942 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.676 5.676 14 C 0.134 3.866 15 C -0.141 4.141 16 C -0.177 4.177 17 C -0.123 4.123 18 C 0.532 3.468 19 O -0.523 6.523 20 N -0.627 5.627 21 C 0.099 3.901 22 C -0.132 4.132 23 C -0.134 4.134 24 C 0.104 3.896 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.272 0.728 31 H 0.327 0.673 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 12.165 -15.576 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.048 0.952 5 C -0.653 4.653 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.544 5.544 9 Si 0.887 3.113 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.218 1.218 13 N -0.306 5.306 14 C 0.042 3.958 15 C -0.199 4.199 16 C -0.236 4.236 17 C -0.163 4.163 18 C 0.322 3.678 19 O -0.399 6.399 20 N -0.364 5.364 21 C -0.024 4.024 22 C -0.170 4.170 23 C -0.173 4.173 24 C -0.018 4.018 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.561 11.542 -13.876 19.205 hybrid contribution -0.185 0.869 -1.029 1.359 sum -6.746 12.411 -14.905 20.535 Atomic orbital electron populations 1.21709 0.98522 0.98539 1.00708 1.21561 0.92673 0.99800 1.00718 1.19263 0.93995 0.90274 0.86966 0.95248 1.22536 0.92121 1.45286 1.05393 0.93527 1.25618 1.06291 0.93732 0.92316 1.70779 1.08030 1.44772 1.30792 0.83701 0.75199 0.76331 0.76020 1.20889 1.21572 1.21752 1.60964 1.44951 1.11265 1.13382 1.20413 0.95468 0.88768 0.91121 1.22046 0.96201 1.01934 0.99672 1.22677 0.97005 1.01439 1.02431 1.21713 1.02907 0.90895 1.00800 1.20542 0.75904 0.88116 0.83210 1.90619 1.51207 1.75992 1.22050 1.48628 1.70341 1.11136 1.06276 1.22023 1.01791 0.97707 0.80858 1.22638 1.02338 0.93921 0.98083 1.22788 1.02237 0.97923 0.94303 1.22165 1.00020 0.81613 0.98051 0.94422 0.93015 0.95437 0.94064 0.91912 0.91634 0.85631 0.92810 0.91076 0.93596 0.94555 0.91959 0.90351 0.89646 0.88911 0.91291 0.91259 0.90514 0.90010 0.89926 0.90606 0.91739 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.75 37.16 0.36 -2.42 16 2 C -0.11 -2.56 5.29 -26.73 -0.14 -2.70 16 3 C 0.20 4.92 0.85 -68.86 -0.06 4.86 16 4 H 0.03 0.79 4.62 -51.93 -0.24 0.55 16 5 C -0.61 -16.50 6.70 -34.44 -0.23 -16.73 16 6 H 0.05 1.26 7.55 -52.49 -0.40 0.86 16 7 C 0.03 0.72 5.16 -17.82 -0.09 0.63 16 8 N -0.91 -26.89 12.77 55.43 0.71 -26.18 16 9 Si 1.06 25.18 29.91 -169.99 -5.08 20.09 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -13.93 5.55 -94.25 -0.52 -14.45 16 14 C 0.13 2.55 0.70 -131.60 -0.09 2.46 16 15 C -0.14 -2.74 8.12 37.16 0.30 -2.44 16 16 C -0.18 -3.78 7.36 37.15 0.27 -3.50 16 17 C -0.12 -1.86 4.16 -27.88 -0.12 -1.98 16 18 C 0.53 8.23 7.24 -10.98 -0.08 8.15 16 19 O -0.52 -9.83 11.63 5.55 0.06 -9.77 16 20 N -0.63 -7.50 3.33 -170.54 -0.57 -8.06 16 21 C 0.10 0.85 6.48 -3.07 -0.02 0.83 16 22 C -0.13 -0.81 6.95 -24.90 -0.17 -0.98 16 23 C -0.13 -0.91 7.08 -24.60 -0.17 -1.09 16 24 C 0.10 1.05 6.91 -2.54 -0.02 1.03 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.00 7.92 -51.93 -0.41 0.59 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.64 6.16 -51.93 -0.32 1.32 16 30 H 0.27 8.08 6.20 -40.82 -0.25 7.82 16 31 H 0.33 6.73 8.03 -39.29 -0.32 6.41 16 32 H 0.05 1.15 6.48 -51.93 -0.34 0.81 16 33 H 0.07 1.38 5.41 -51.93 -0.28 1.10 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.33 5.64 -51.93 -0.29 1.03 16 37 H 0.08 1.95 5.67 -51.92 -0.29 1.66 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -30.76 352.97 -8.61 -39.38 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.27 Total: 7.56 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.26 Total: -13.88 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.38 Total: -48.70 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.76 -8.61 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.595 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds