Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 H 1.09005 * 109.47421 * 303.69149 * 3 2 1 5 5 C 1.50700 * 109.47222 * 183.69821 * 3 2 1 6 6 H 1.08011 * 119.99533 * 245.58345 * 5 3 2 7 7 C 1.37872 * 120.00446 * 65.58063 * 5 3 2 8 8 N 1.31511 * 119.99884 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00240 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47081 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47633 * 119.99524 * 9 7 5 12 12 H 1.48502 * 109.47126 * 239.99641 * 9 7 5 13 13 N 1.46899 * 109.47381 * 63.68986 * 3 2 1 14 14 C 1.46894 * 111.00427 * 261.98057 * 13 3 2 15 15 C 1.54030 * 113.81664 * 23.26039 * 14 13 3 16 16 O 1.44450 * 85.42899 * 223.24066 * 15 14 13 17 17 C 1.44181 * 93.37620 * 24.08892 * 16 15 14 18 18 C 1.46900 * 110.99492 * 25.93516 * 13 3 2 19 19 H 1.08999 * 109.47240 * 314.42615 * 18 13 3 20 20 C 1.52995 * 109.47480 * 74.43096 * 18 13 3 21 21 C 1.52997 * 109.47620 * 179.97438 * 20 18 13 22 22 C 1.52999 * 109.47381 * 300.00004 * 21 20 18 23 23 H 1.09002 * 109.47077 * 300.00145 * 22 21 20 24 24 N 1.46895 * 109.47522 * 179.97438 * 22 21 20 25 25 C 1.53003 * 109.46883 * 59.99277 * 22 21 20 26 26 C 1.52998 * 109.47453 * 300.00233 * 25 22 21 27 27 H 1.09001 * 109.46705 * 186.60984 * 1 2 3 28 28 H 1.08994 * 109.47438 * 306.60880 * 1 2 3 29 29 H 1.08997 * 109.47264 * 66.61275 * 1 2 3 30 30 H 1.08999 * 109.47351 * 240.00339 * 2 1 3 31 31 H 1.08996 * 109.47406 * 119.99935 * 2 1 3 32 32 H 0.96999 * 120.00482 * 180.02562 * 8 7 5 33 33 H 1.09003 * 113.00147 * 155.09070 * 14 13 3 34 34 H 1.09000 * 113.86454 * 337.34578 * 15 14 13 35 35 H 1.08995 * 113.86449 * 109.05026 * 15 14 13 36 36 H 1.09007 * 113.86191 * 221.77280 * 17 16 15 37 37 H 1.08993 * 113.86444 * 90.06697 * 17 16 15 38 38 H 1.09009 * 109.47429 * 59.99589 * 20 18 13 39 39 H 1.09006 * 109.47024 * 300.00012 * 20 18 13 40 40 H 1.08999 * 109.46921 * 59.99629 * 21 20 18 41 41 H 1.09002 * 109.47446 * 179.97438 * 21 20 18 42 42 H 1.00905 * 111.00053 * 180.02562 * 24 22 21 43 43 H 1.00902 * 110.99923 * 303.95507 * 24 22 21 44 44 H 1.09006 * 109.47161 * 180.02562 * 25 22 21 45 45 H 1.08999 * 109.47058 * 60.00595 * 25 22 21 46 46 H 1.08999 * 109.47284 * 300.00223 * 26 25 22 47 47 H 1.09000 * 109.47392 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6236 1.9751 -0.8551 5 6 3.5442 1.4436 -0.0916 6 1 4.1352 1.8122 0.7338 7 6 4.1659 0.9740 -1.2291 8 7 3.4463 0.5246 -2.2339 9 14 6.0304 0.9746 -1.3423 10 1 6.6023 1.5264 -0.0878 11 1 6.5151 -0.4153 -1.5383 12 1 6.4563 1.8139 -2.4910 13 7 1.6244 2.1088 1.2415 14 6 0.4146 2.9140 1.0274 15 6 -0.4303 2.4589 -0.1774 16 8 -0.5488 3.8666 -0.4789 17 6 0.6614 4.2068 0.2271 18 6 1.4231 1.1328 2.3207 19 1 0.8500 0.2861 1.9427 20 6 2.7818 0.6440 2.8264 21 6 2.5722 -0.3721 3.9509 22 6 1.8082 0.2890 5.0999 23 1 2.3814 1.1358 5.4775 24 7 1.6064 -0.6867 6.1793 25 6 0.4495 0.7779 4.5942 26 6 0.6592 1.7940 3.4698 27 1 -0.3633 -1.0209 0.1183 28 1 -0.3634 0.6128 0.8249 29 1 -0.3634 0.4079 -0.9432 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8837 0.1938 -3.0340 33 1 -0.1638 3.0643 1.9390 34 1 0.1312 1.8943 -0.9217 35 1 -1.3722 1.9848 0.0985 36 1 0.5835 5.1161 0.8231 37 1 1.5570 4.1771 -0.3934 38 1 3.3549 1.4907 3.2045 39 1 3.3263 0.1733 2.0077 40 1 1.9990 -1.2188 3.5732 41 1 3.5402 -0.7207 4.3108 42 1 1.1032 -0.2740 6.9504 43 1 1.1333 -1.5102 5.8385 44 1 -0.0947 1.2494 5.4127 45 1 -0.1237 -0.0688 4.2165 46 1 1.2324 2.6407 3.8474 47 1 -0.3089 2.1420 3.1092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = 24.759655 kcal Electronic energy + Delta-G solvation = -25149.848477 eV Core-core repulsion = 21949.088022 eV Total energy + Delta-G solvation = -3200.760456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76977 -38.58846 -36.38044 -33.27306 -32.01579 -31.14910 -30.41072 -28.21347 -27.47142 -25.85453 -25.10710 -22.92570 -22.35551 -21.10154 -20.64907 -19.65949 -17.78609 -16.84690 -16.17360 -15.97956 -15.55744 -15.16712 -14.95840 -14.83279 -14.26937 -13.90727 -13.67157 -13.13006 -12.84288 -12.69267 -12.31297 -12.09727 -11.85499 -11.70317 -11.45853 -11.33795 -11.15355 -11.02398 -10.88209 -10.82744 -10.69769 -10.52634 -10.18075 -10.02335 -9.99366 -9.82611 -9.71581 -9.40045 -9.09824 -8.73299 -8.59913 -8.23535 -7.17130 -6.03025 -4.04221 3.29428 3.38502 3.42655 4.29213 4.40219 4.52884 4.74640 4.88629 4.93520 5.13242 5.28107 5.37913 5.43941 5.46212 5.64538 5.71037 5.77608 5.83602 5.89314 5.91916 5.98100 6.00955 6.06573 6.09520 6.11877 6.27049 6.31630 6.33849 6.45619 6.47489 6.59174 6.67529 6.68223 6.76224 6.83777 6.92217 7.04649 7.11650 7.18051 7.36142 7.42996 7.61993 7.86086 8.16274 8.30106 8.51491 9.02886 9.59931 11.04444 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.007896 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.626183 B = 3545.114390 C = 4877.708051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.150 4.150 3 C 0.207 3.793 4 H 0.048 0.952 5 C -0.488 4.488 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.514 5.514 14 C 0.011 3.989 15 C -0.016 4.016 16 O -0.400 6.400 17 C 0.043 3.957 18 C 0.076 3.924 19 H 0.063 0.937 20 C -0.108 4.108 21 C -0.109 4.109 22 C 0.090 3.910 23 H 0.078 0.922 24 N -0.847 5.847 25 C -0.146 4.146 26 C -0.121 4.121 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.335 0.665 43 H 0.336 0.664 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -0.385 10.894 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.189 4.189 3 C 0.101 3.899 4 H 0.065 0.935 5 C -0.527 4.527 6 H 0.084 0.916 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.237 5.237 14 C -0.099 4.099 15 C -0.093 4.093 16 O -0.319 6.319 17 C -0.034 4.034 18 C -0.032 4.032 19 H 0.081 0.919 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.021 4.021 23 H 0.096 0.904 24 N -0.375 5.375 25 C -0.186 4.186 26 C -0.159 4.159 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.556 -0.008 10.765 12.115 hybrid contribution -0.673 -0.519 -0.512 0.992 sum -6.229 -0.527 10.254 12.009 Atomic orbital electron populations 1.22652 0.99923 0.99731 1.00601 1.22247 0.91439 1.02204 1.03005 1.19558 0.95753 0.88731 0.85832 0.93462 1.21185 0.90540 1.39959 1.01024 0.91595 1.24938 0.98027 0.95707 0.95741 1.69906 1.34886 1.42929 1.05787 0.86541 0.85996 0.77461 0.78041 1.19681 1.21295 1.21243 1.62316 1.28050 1.24614 1.08747 1.25233 0.91815 0.95145 0.97692 1.26046 1.00032 0.84035 0.99176 1.89604 1.41915 1.22212 1.78153 1.24103 0.88582 0.97440 0.93274 1.21861 0.96199 0.94674 0.90460 0.91949 1.21617 0.97216 0.98168 0.97600 1.21568 1.00027 0.98450 0.94750 1.21534 0.94879 0.94514 0.91182 0.90361 1.58994 1.57897 1.09633 1.10945 1.22341 0.98392 0.99448 0.98467 1.21841 0.99997 0.98383 0.95698 0.94751 0.93119 0.92569 0.89281 0.92994 0.93084 0.87789 0.86341 0.90849 0.90372 0.89207 0.92057 0.88937 0.92752 0.91642 0.85315 0.85140 0.92766 0.92466 0.91467 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 7.08 37.16 0.26 -2.82 16 2 C -0.15 -3.17 4.64 -26.73 -0.12 -3.30 16 3 C 0.21 4.61 1.34 -68.87 -0.09 4.52 16 4 H 0.05 1.19 4.89 -51.93 -0.25 0.94 16 5 C -0.49 -12.30 7.03 -34.44 -0.24 -12.54 16 6 H 0.07 1.70 7.34 -52.48 -0.39 1.31 16 7 C 0.06 1.48 5.31 -17.82 -0.09 1.39 16 8 N -0.90 -24.32 11.73 55.43 0.65 -23.67 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.51 -9.76 4.29 -220.02 -0.94 -10.70 16 14 C 0.01 0.20 3.38 -66.64 -0.23 -0.03 16 15 C -0.02 -0.29 5.23 37.64 0.20 -0.09 16 16 O -0.40 -7.78 12.46 -35.23 -0.44 -8.22 16 17 C 0.04 0.78 8.66 37.64 0.33 1.11 16 18 C 0.08 1.26 1.07 -67.71 -0.07 1.18 16 19 H 0.06 1.08 3.71 -51.93 -0.19 0.89 16 20 C -0.11 -1.83 4.24 -26.74 -0.11 -1.94 16 21 C -0.11 -1.55 5.46 -26.73 -0.15 -1.70 16 22 C 0.09 1.10 3.25 -67.71 -0.22 0.88 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 N -0.85 -9.01 9.25 -4.67 -0.04 -9.05 16 25 C -0.15 -1.72 5.49 -26.73 -0.15 -1.86 16 26 C -0.12 -1.67 4.50 -26.73 -0.12 -1.79 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.84 3.65 -51.93 -0.19 0.65 16 29 H 0.06 1.02 5.92 -51.93 -0.31 0.71 16 30 H 0.09 2.18 6.45 -51.93 -0.34 1.85 16 31 H 0.05 1.08 4.86 -51.93 -0.25 0.82 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.10 1.62 4.94 -51.93 -0.26 1.36 16 34 H 0.12 2.43 3.19 -51.93 -0.17 2.27 16 35 H 0.07 1.19 7.14 -51.93 -0.37 0.82 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.79 7.68 -51.93 -0.40 1.39 16 38 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 39 H 0.09 1.85 5.33 -51.93 -0.28 1.58 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.34 2.98 9.04 -39.29 -0.36 2.62 16 43 H 0.34 3.29 8.98 -39.29 -0.35 2.93 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.80 5.79 -51.93 -0.30 0.50 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -26.38 325.77 -9.03 -35.41 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.33 Total: 12.61 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.81 Total: -16.98 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.34 Total: -43.43 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.44 Total: -8.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.38 -9.03 -35.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.170 kcal (2) G-P(sol) polarization free energy of solvation -26.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds