Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47020 * 2 1 4 4 O 1.21279 * 120.00147 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.62997 * 179.97438 * 5 3 2 7 7 C 1.53190 * 108.77595 * 233.63200 * 6 5 3 8 8 C 1.53045 * 109.31203 * 305.36784 * 7 6 5 9 9 C 1.53006 * 109.45875 * 181.38730 * 8 7 6 10 10 N 1.46898 * 109.47052 * 174.99813 * 9 8 7 11 11 C 1.46901 * 110.99790 * 185.95885 * 10 9 8 12 12 H 1.08995 * 109.47645 * 322.40258 * 11 10 9 13 13 C 1.50701 * 109.46985 * 82.40351 * 11 10 9 14 14 H 1.08006 * 119.99869 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00420 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99625 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00207 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46912 * 60.00764 * 17 15 13 19 19 H 1.48507 * 109.46938 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47401 * 300.00054 * 17 15 13 21 21 C 1.52999 * 109.47257 * 202.40268 * 11 10 9 22 22 C 1.53004 * 109.47146 * 65.62637 * 21 11 10 23 23 C 1.53038 * 109.54138 * 61.36585 * 8 7 6 24 24 C 1.46928 * 120.63110 * 0.02806 * 5 3 2 25 25 H 1.09007 * 109.46879 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47158 * 299.99463 * 1 2 3 27 27 H 1.08993 * 109.47669 * 60.00014 * 1 2 3 28 28 H 1.09003 * 109.47158 * 240.00537 * 2 1 3 29 29 H 1.09000 * 109.47585 * 120.00379 * 2 1 3 30 30 H 1.09007 * 109.58487 * 113.84868 * 6 5 3 31 31 H 1.08995 * 109.70555 * 353.49197 * 6 5 3 32 32 H 1.08997 * 109.49799 * 185.41615 * 7 6 5 33 33 H 1.09000 * 109.52505 * 65.33082 * 7 6 5 34 34 H 1.09003 * 109.45930 * 301.35531 * 8 7 6 35 35 H 1.08999 * 109.47166 * 54.99526 * 9 8 7 36 36 H 1.09002 * 109.46826 * 295.00068 * 9 8 7 37 37 H 1.00902 * 110.99659 * 62.01384 * 10 9 8 38 38 H 0.97004 * 120.00112 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47659 * 185.63063 * 21 11 10 40 40 H 1.09006 * 109.47141 * 305.63226 * 21 11 10 41 41 H 1.08997 * 109.46900 * 294.10422 * 22 21 11 42 42 H 1.08998 * 109.47049 * 54.10517 * 22 21 11 43 43 H 1.09004 * 109.46948 * 174.10084 * 22 21 11 44 44 H 1.09001 * 109.49351 * 58.58059 * 23 8 7 45 45 H 1.08995 * 109.49946 * 178.68170 * 23 8 7 46 46 H 1.09005 * 109.58130 * 246.15733 * 24 5 3 47 47 H 1.09003 * 109.58503 * 6.43002 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8622 3.0469 0.0000 7 6 4.8399 3.2137 -1.1675 8 6 5.9311 2.1450 -1.0705 9 6 6.9290 2.3300 -2.2155 10 7 8.0397 1.3822 -2.0551 11 6 9.0876 1.6248 -3.0556 12 1 8.6273 1.9010 -4.0042 13 6 9.9809 2.7440 -2.5861 14 1 9.7892 3.2270 -1.6393 15 6 11.0431 3.1514 -3.3651 16 7 11.2763 2.5636 -4.5182 17 14 12.1499 4.5391 -2.7834 18 1 12.7767 4.1635 -1.4906 19 1 13.2093 4.7843 -3.7948 20 1 11.3436 5.7729 -2.6027 21 6 9.9182 0.3536 -3.2429 22 6 9.0421 -0.7429 -3.8519 23 6 5.2969 0.7556 -1.1664 24 6 4.3244 0.5610 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.3773 3.2479 0.9394 31 1 3.0312 3.7423 -0.1172 32 1 5.2947 4.2032 -1.1226 33 1 4.3041 3.1020 -2.1102 34 1 6.4505 2.2419 -0.1171 35 1 7.3157 3.3490 -2.1995 36 1 6.4289 2.1462 -3.1665 37 1 7.7110 0.4292 -2.0996 38 1 12.0238 2.8499 -5.0662 39 1 10.7556 0.5615 -3.9089 40 1 10.2966 0.0212 -2.2762 41 1 8.2656 -1.0245 -3.1406 42 1 8.5797 -0.3724 -4.7668 43 1 9.6568 -1.6131 -4.0823 44 1 4.7564 0.6668 -2.1088 45 1 6.0769 -0.0043 -1.1208 46 1 4.8770 0.5589 0.9400 47 1 3.7966 -0.3858 -0.1150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -60.109558 kcal Electronic energy + Delta-G solvation = -22976.733257 eV Core-core repulsion = 19772.292596 eV Total energy + Delta-G solvation = -3204.440661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31276 -37.98921 -36.15548 -33.86959 -33.09443 -31.89442 -31.04771 -30.49540 -27.25013 -25.96339 -24.46083 -23.32919 -22.87313 -21.68901 -20.16743 -19.50783 -18.87725 -17.33728 -16.31230 -15.94656 -15.87068 -14.98495 -14.83096 -14.35338 -14.24275 -13.97745 -13.78187 -13.47553 -13.29996 -12.82061 -12.75594 -12.54345 -12.33722 -12.01655 -11.96018 -11.88893 -11.42214 -11.35788 -11.23553 -11.22353 -10.91726 -10.69894 -10.63592 -10.39229 -10.25025 -9.96212 -9.81667 -9.67803 -9.53704 -9.06515 -8.70136 -8.35004 -7.22646 -5.97299 -4.01536 2.52664 2.90167 3.33330 3.37664 3.40856 4.34464 4.44027 4.66848 4.82426 4.83757 4.88699 4.95037 5.06058 5.20837 5.25892 5.30963 5.39702 5.48434 5.55332 5.60666 5.69763 5.72826 5.85267 5.88799 5.98766 6.01858 6.09440 6.12664 6.15101 6.16272 6.28857 6.39858 6.48163 6.65121 6.69202 6.82485 7.07611 7.19328 7.30774 7.50146 7.77596 7.90694 8.07521 8.30211 8.38755 8.76476 9.06151 9.63459 11.08108 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.003421 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.603952 B = 8183.267758 C = 8946.753874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.512 3.488 4 O -0.549 6.549 5 N -0.611 5.611 6 C 0.112 3.888 7 C -0.128 4.128 8 C -0.084 4.084 9 C 0.074 3.926 10 N -0.686 5.686 11 C 0.219 3.781 12 H -0.001 1.001 13 C -0.494 4.494 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.125 4.125 22 C -0.149 4.149 23 C -0.130 4.130 24 C 0.107 3.893 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.012 0.988 37 H 0.314 0.686 38 H 0.260 0.740 39 H 0.099 0.901 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.381 -6.762 7.646 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.300 3.700 4 O -0.427 6.427 5 N -0.344 5.344 6 C -0.010 4.010 7 C -0.167 4.167 8 C -0.103 4.103 9 C -0.056 4.056 10 N -0.318 5.318 11 C 0.112 3.888 12 H 0.016 0.984 13 C -0.532 4.532 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.163 4.163 22 C -0.207 4.207 23 C -0.168 4.168 24 C -0.015 4.015 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.341 -5.882 7.970 18.261 hybrid contribution 0.455 0.324 -0.662 0.866 sum -14.886 -5.558 7.307 17.490 Atomic orbital electron populations 1.21531 0.93146 1.01450 1.03281 1.21662 0.98465 0.94121 1.04183 1.20778 0.81727 0.91839 0.75633 1.90673 1.54903 1.46682 1.50408 1.48203 1.05537 1.07721 1.72962 1.21613 0.97956 0.82755 0.98712 1.21942 0.96516 1.00054 0.98206 1.21188 0.94855 0.93216 1.01050 1.21808 0.90903 0.98959 0.93923 1.60715 1.10957 1.04974 1.55105 1.19125 0.87990 0.93435 0.88272 0.98369 1.21164 1.11012 1.16191 1.04868 0.92166 1.24961 0.97698 0.96920 0.94988 1.69865 1.30232 1.41803 1.11773 0.86612 0.80215 0.82534 0.78314 1.20313 1.21478 1.20440 1.21747 1.00727 0.93697 1.00129 1.21876 0.99643 0.99350 0.99794 1.21971 0.98263 0.98867 0.97744 1.21807 0.90957 0.89108 0.99670 0.92157 0.92084 0.92035 0.88913 0.89009 0.91527 0.89306 0.90426 0.91842 0.90220 0.90668 0.97029 0.86860 0.93041 0.88321 0.94056 0.94693 0.93964 0.94403 0.91989 0.90064 0.91045 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.15 0.34 -0.79 16 2 C -0.14 -1.19 4.77 -27.89 -0.13 -1.32 16 3 C 0.51 6.18 7.70 -10.99 -0.08 6.10 16 4 O -0.55 -8.64 15.40 5.56 0.09 -8.55 16 5 N -0.61 -6.87 2.97 -172.79 -0.51 -7.39 16 6 C 0.11 1.32 6.43 -3.71 -0.02 1.29 16 7 C -0.13 -1.60 5.36 -26.61 -0.14 -1.74 16 8 C -0.08 -1.14 2.36 -90.57 -0.21 -1.35 16 9 C 0.07 1.31 4.92 -3.82 -0.02 1.29 16 10 N -0.69 -13.69 6.23 -107.95 -0.67 -14.36 16 11 C 0.22 5.31 2.02 -68.86 -0.14 5.17 16 12 H 0.00 -0.03 7.90 -51.93 -0.41 -0.45 16 13 C -0.49 -13.37 8.40 -34.44 -0.29 -13.66 16 14 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 15 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 16 N -0.90 -25.32 11.29 55.43 0.63 -24.69 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.12 -2.87 5.38 -26.73 -0.14 -3.01 16 22 C -0.15 -2.79 9.63 37.16 0.36 -2.44 16 23 C -0.13 -1.47 5.15 -26.64 -0.14 -1.61 16 24 C 0.11 1.00 6.34 -3.73 -0.02 0.97 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.09 0.64 7.70 -51.93 -0.40 0.24 16 29 H 0.09 0.59 7.94 -51.93 -0.41 0.17 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.50 7.79 -51.93 -0.40 1.10 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.31 5.61 5.07 -39.29 -0.20 5.41 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.57 6.66 -51.93 -0.35 0.23 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.92 6.76 -51.93 -0.35 0.57 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -30.23 360.28 -9.35 -39.58 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.54 Total: 3.37 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -0.74 Total: -9.69 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.56 Total: -46.43 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.23 -9.35 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.534 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds