Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47013 * 2 1 4 4 O 1.21285 * 119.99993 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99967 * 179.97438 * 3 2 1 6 6 C 1.46932 * 120.62865 * 180.02562 * 5 3 2 7 7 C 1.53199 * 108.77167 * 233.62945 * 6 5 3 8 8 C 1.53034 * 109.31261 * 305.36542 * 7 6 5 9 9 C 1.52999 * 109.46186 * 181.38739 * 8 7 6 10 10 N 1.46900 * 109.47552 * 174.99847 * 9 8 7 11 11 C 1.46899 * 111.00093 * 183.08385 * 10 9 8 12 12 H 1.08996 * 109.47271 * 341.42022 * 11 10 9 13 13 C 1.50702 * 109.47021 * 221.41697 * 11 10 9 14 14 H 1.07995 * 119.99890 * 0.16115 * 13 11 10 15 15 C 1.37874 * 119.99692 * 180.15572 * 13 11 10 16 16 N 1.31522 * 119.99599 * 166.69082 * 15 13 11 17 17 Si 1.86801 * 120.00443 * 346.69256 * 15 13 11 18 18 H 1.48498 * 109.47132 * 264.65247 * 17 15 13 19 19 H 1.48497 * 109.46929 * 24.65385 * 17 15 13 20 20 H 1.48499 * 109.46936 * 144.65015 * 17 15 13 21 21 C 1.53004 * 109.46925 * 101.42049 * 11 10 9 22 22 C 1.52998 * 109.47354 * 294.72269 * 21 11 10 23 23 C 1.53034 * 109.54153 * 61.36466 * 8 7 6 24 24 C 1.46922 * 120.63173 * 0.02562 * 5 3 2 25 25 H 1.08996 * 109.47531 * 299.99891 * 1 2 3 26 26 H 1.09002 * 109.47158 * 60.00727 * 1 2 3 27 27 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47360 * 239.99604 * 2 1 3 29 29 H 1.09009 * 109.46810 * 119.99452 * 2 1 3 30 30 H 1.08997 * 109.58992 * 113.84578 * 6 5 3 31 31 H 1.09000 * 109.70358 * 353.48494 * 6 5 3 32 32 H 1.09003 * 109.49516 * 185.41152 * 7 6 5 33 33 H 1.08997 * 109.52152 * 65.33345 * 7 6 5 34 34 H 1.09007 * 109.46125 * 301.35635 * 8 7 6 35 35 H 1.09006 * 109.47227 * 54.99552 * 9 8 7 36 36 H 1.08999 * 109.47032 * 295.00232 * 9 8 7 37 37 H 1.00901 * 110.99754 * 307.03752 * 10 9 8 38 38 H 0.97001 * 119.99964 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.46832 * 54.72519 * 21 11 10 40 40 H 1.08997 * 109.46890 * 174.72372 * 21 11 10 41 41 H 1.09004 * 109.46798 * 306.78532 * 22 21 11 42 42 H 1.09003 * 109.46997 * 66.77636 * 22 21 11 43 43 H 1.08990 * 109.47390 * 186.78054 * 22 21 11 44 44 H 1.08999 * 109.49844 * 58.58468 * 23 8 7 45 45 H 1.09000 * 109.49928 * 178.68426 * 23 8 7 46 46 H 1.09000 * 109.58727 * 246.15848 * 24 5 3 47 47 H 1.08995 * 109.58719 * 6.44336 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8623 3.0469 0.0011 7 6 4.8398 3.2146 -1.1665 8 6 5.9310 2.1460 -1.0704 9 6 6.9287 2.3318 -2.2154 10 7 8.0395 1.3838 -2.0559 11 6 9.0553 1.5828 -3.0982 12 1 8.6208 2.1416 -3.9271 13 6 9.5366 0.2432 -3.5929 14 1 9.1268 -0.6652 -3.1766 15 6 10.5001 0.1773 -4.5769 16 7 11.1085 -0.9618 -4.8262 17 14 10.9413 1.7057 -5.5561 18 1 10.1654 1.7236 -6.8221 19 1 10.6157 2.9154 -4.7588 20 1 12.3936 1.6930 -5.8657 21 6 10.2347 2.3660 -2.5179 22 6 9.7737 3.7741 -2.1363 23 6 5.2968 0.7566 -1.1674 24 6 4.3244 0.5610 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.3774 3.2472 0.9406 31 1 3.0311 3.7424 -0.1154 32 1 5.2947 4.2042 -1.1208 33 1 4.3039 3.1037 -2.1091 34 1 6.4506 2.2421 -0.1170 35 1 7.3154 3.3508 -2.1986 36 1 6.4286 2.1488 -3.1664 37 1 8.4468 1.4557 -1.1355 38 1 11.7866 -1.0081 -5.5182 39 1 10.6101 1.8540 -1.6319 40 1 11.0280 2.4327 -3.2624 41 1 9.2887 4.2422 -2.9930 42 1 9.0679 3.7132 -1.3078 43 1 10.6357 4.3698 -1.8364 44 1 4.7561 0.6684 -2.1097 45 1 6.0768 -0.0034 -1.1224 46 1 4.8770 0.5588 0.9400 47 1 3.7967 -0.3857 -0.1152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -49.522858 kcal Electronic energy + Delta-G solvation = -23058.616503 eV Core-core repulsion = 19854.634916 eV Total energy + Delta-G solvation = -3203.981587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31928 -38.09180 -36.53896 -33.89806 -33.06670 -32.04617 -31.08320 -30.55130 -27.91608 -26.11752 -24.46224 -23.22745 -22.66625 -21.78586 -20.49716 -19.84952 -18.88363 -17.36616 -16.68613 -15.94236 -15.87668 -15.23108 -14.76552 -14.48879 -14.24912 -14.23771 -13.85306 -13.54344 -13.19365 -13.01925 -12.82577 -12.68106 -12.48938 -12.16651 -11.88785 -11.85233 -11.67028 -11.62902 -11.37985 -11.24165 -11.12044 -10.85585 -10.69415 -10.48573 -10.41408 -10.24813 -9.89536 -9.82152 -9.30230 -9.23430 -8.71357 -8.40663 -7.33054 -6.05797 -3.98393 2.52978 2.90012 3.26176 3.35277 3.38772 4.36619 4.42626 4.67476 4.72242 4.85478 4.88098 4.92682 5.06093 5.14350 5.21740 5.25075 5.36966 5.45698 5.49799 5.58896 5.66784 5.71696 5.73061 5.76193 5.80370 5.82737 5.95314 5.99207 6.00234 6.02815 6.12766 6.19793 6.33401 6.45098 6.53318 6.57331 6.60583 6.74655 6.85456 7.17348 7.30146 7.76660 7.94725 8.07457 8.33961 8.72568 9.10517 9.60606 11.07752 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027259 B = 0.003481 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.920601 B = 8041.097836 C = 8611.282761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.512 3.488 4 O -0.550 6.550 5 N -0.611 5.611 6 C 0.113 3.887 7 C -0.129 4.129 8 C -0.083 4.083 9 C 0.060 3.940 10 N -0.669 5.669 11 C 0.194 3.806 12 H 0.021 0.979 13 C -0.498 4.498 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.897 5.897 17 Si 0.855 3.145 18 H -0.284 1.284 19 H -0.247 1.247 20 H -0.289 1.289 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.121 4.121 24 C 0.104 3.896 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.326 0.674 38 H 0.262 0.738 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.243 5.169 10.861 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.301 3.699 4 O -0.428 6.428 5 N -0.345 5.345 6 C -0.010 4.010 7 C -0.168 4.168 8 C -0.102 4.102 9 C -0.069 4.069 10 N -0.299 5.299 11 C 0.085 3.915 12 H 0.039 0.961 13 C -0.536 4.536 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.683 3.317 18 H -0.211 1.211 19 H -0.172 1.172 20 H -0.215 1.215 21 C -0.194 4.194 22 C -0.210 4.210 23 C -0.159 4.159 24 C -0.019 4.019 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.087 0.913 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.838 5.055 10.401 18.812 hybrid contribution 1.052 1.567 -0.454 1.941 sum -13.786 6.622 9.947 18.244 Atomic orbital electron populations 1.21531 0.93169 1.01491 1.03202 1.21667 0.98431 0.94039 1.04339 1.20799 0.81702 0.91877 0.75491 1.90668 1.54951 1.46713 1.50514 1.48217 1.05640 1.07624 1.73004 1.21564 0.97909 0.83127 0.98365 1.21953 0.96712 0.99436 0.98678 1.21144 0.95250 0.94534 0.99298 1.22100 0.92900 0.94176 0.97770 1.60622 1.11447 1.51663 1.06174 1.19537 0.86657 0.95779 0.89522 0.96136 1.21015 1.20563 0.92173 1.19859 0.90196 1.24926 0.95410 0.95523 0.97337 1.69958 1.25353 1.25807 1.32451 0.87444 0.77724 0.85619 0.80903 1.21060 1.17182 1.21474 1.22738 1.01567 0.93796 1.01344 1.21930 1.00109 0.98710 1.00240 1.21884 0.98441 0.98315 0.97298 1.21922 0.91050 0.89112 0.99815 0.92149 0.92055 0.92114 0.88724 0.88984 0.91764 0.89324 0.90962 0.91494 0.91479 0.95896 0.91712 0.85761 0.92853 0.92401 0.91809 0.93658 0.93614 0.94075 0.91752 0.88546 0.91325 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.82 16 2 C -0.14 -1.24 4.77 -27.89 -0.13 -1.37 16 3 C 0.51 6.16 7.70 -10.99 -0.08 6.08 16 4 O -0.55 -8.55 15.40 5.55 0.09 -8.47 16 5 N -0.61 -6.70 2.97 -172.74 -0.51 -7.22 16 6 C 0.11 1.22 6.43 -3.70 -0.02 1.20 16 7 C -0.13 -1.41 5.36 -26.61 -0.14 -1.56 16 8 C -0.08 -1.00 2.26 -90.59 -0.20 -1.21 16 9 C 0.06 0.92 4.47 -3.82 -0.02 0.91 16 10 N -0.67 -12.32 5.52 -107.95 -0.60 -12.92 16 11 C 0.19 4.30 1.75 -68.86 -0.12 4.17 16 12 H 0.02 0.48 6.67 -51.93 -0.35 0.14 16 13 C -0.50 -13.57 9.35 -34.44 -0.32 -13.89 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C 0.07 1.95 5.35 -17.82 -0.10 1.86 16 16 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 17 Si 0.86 20.66 25.68 -169.99 -4.37 16.30 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.25 -5.53 5.15 56.52 0.29 -5.23 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 C -0.16 -3.17 4.37 -26.73 -0.12 -3.28 16 22 C -0.15 -2.54 8.63 37.16 0.32 -2.22 16 23 C -0.12 -1.42 5.26 -26.60 -0.14 -1.56 16 24 C 0.10 0.97 6.34 -3.69 -0.02 0.95 16 25 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 29 H 0.09 0.62 7.94 -51.92 -0.41 0.20 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.02 0.35 6.02 -51.93 -0.31 0.03 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.33 5.59 7.95 -39.29 -0.31 5.27 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 1.16 8.03 -51.93 -0.42 0.75 16 40 H 0.06 1.41 4.10 -51.93 -0.21 1.20 16 41 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.04 0.68 6.72 -51.93 -0.35 0.33 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 1.27 7.72 -51.93 -0.40 0.87 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -31.26 353.83 -8.61 -39.87 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.57 Total: 4.12 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.76 Total: -10.74 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.34 Total: -46.42 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.37 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.26 -8.61 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.649 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds