Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.08997 * 109.47778 * 304.36859 * 3 2 1 5 5 C 1.50703 * 109.46918 * 184.36765 * 3 2 1 6 6 H 1.08007 * 119.99731 * 240.00178 * 5 3 2 7 7 C 1.37868 * 120.00151 * 60.00450 * 5 3 2 8 8 N 1.31518 * 119.99953 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47193 * 59.99857 * 9 7 5 11 11 H 1.48499 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46901 * 299.99783 * 9 7 5 13 13 N 1.46900 * 109.46873 * 64.37133 * 3 2 1 14 14 C 1.46907 * 110.99855 * 205.40434 * 13 3 2 15 15 H 1.09003 * 110.64446 * 322.72698 * 14 13 3 16 16 C 1.54595 * 110.72326 * 85.87880 * 14 13 3 17 17 C 1.53996 * 105.13834 * 140.31521 * 16 14 13 18 18 N 1.47908 * 107.05967 * 1.22824 * 17 16 14 19 19 C 1.46897 * 110.99801 * 214.15641 * 18 17 16 20 20 C 1.53180 * 109.53977 * 176.70353 * 19 18 17 21 21 C 1.53282 * 109.06195 * 176.85127 * 20 19 18 22 22 O 1.42909 * 109.46070 * 302.44749 * 21 20 19 23 23 C 1.42901 * 114.09930 * 61.15888 * 22 21 20 24 24 C 1.53092 * 109.41256 * 298.84102 * 23 22 21 25 25 C 1.48541 * 105.81300 * 334.66718 * 18 17 16 26 26 H 1.09004 * 109.46931 * 304.28992 * 1 2 3 27 27 H 1.09003 * 109.46940 * 64.28537 * 1 2 3 28 28 H 1.08997 * 109.47120 * 184.28602 * 1 2 3 29 29 H 1.09000 * 109.47024 * 240.00626 * 2 1 3 30 30 H 1.09000 * 109.47075 * 120.00196 * 2 1 3 31 31 H 0.97007 * 119.99833 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00277 * 81.44996 * 13 3 2 33 33 H 1.08995 * 110.30918 * 21.40014 * 16 14 13 34 34 H 1.08995 * 110.30776 * 259.22803 * 16 14 13 35 35 H 1.08991 * 109.91922 * 241.87403 * 17 16 14 36 36 H 1.09005 * 110.08208 * 120.66782 * 17 16 14 37 37 H 1.09001 * 109.54425 * 56.53031 * 19 18 17 38 38 H 1.08997 * 109.52644 * 296.83891 * 20 19 18 39 39 H 1.08999 * 109.52404 * 57.03523 * 20 19 18 40 40 H 1.09001 * 109.45905 * 182.44856 * 21 20 19 41 41 H 1.09001 * 109.46924 * 62.44268 * 21 20 19 42 42 H 1.08995 * 109.48318 * 178.86049 * 23 22 21 43 43 H 1.08994 * 109.49325 * 58.82789 * 23 22 21 44 44 H 1.09000 * 109.52505 * 297.70563 * 24 23 22 45 45 H 1.09006 * 109.57661 * 177.54398 * 24 23 22 46 46 H 1.09003 * 110.66202 * 157.64926 * 25 18 17 47 47 H 1.08999 * 110.66717 * 280.77213 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6142 1.9785 -0.8482 5 6 3.5431 1.4438 -0.1082 6 1 4.1404 1.8913 0.6726 7 6 4.1559 0.8740 -1.2039 8 7 3.4287 0.3288 -2.1545 9 14 6.0192 0.8750 -1.3377 10 1 6.5988 0.1444 -0.1821 11 1 6.4252 0.2061 -2.5998 12 1 6.5147 2.2749 -1.3372 13 7 1.6384 2.1038 1.2487 14 6 1.5520 3.5593 1.0695 15 1 2.3425 3.9125 0.4072 16 6 0.1621 3.9620 0.5257 17 6 -0.2037 5.2562 1.2757 18 7 0.9324 5.5772 2.1667 19 6 0.4646 6.1970 3.4137 20 6 1.6571 6.4398 4.3440 21 6 1.1687 7.1575 5.6072 22 8 0.5268 8.3809 5.2417 23 6 -0.6226 8.2108 4.4098 24 6 -0.2071 7.5373 3.0993 25 6 1.6125 4.2847 2.4371 26 1 -0.3633 0.5790 0.8491 27 1 -0.3633 0.4459 -0.9259 28 1 -0.3633 -1.0248 0.0768 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8599 -0.0725 -2.9252 32 1 2.2683 1.8689 2.0012 33 1 -0.5683 3.1817 0.7392 34 1 0.2150 4.1485 -0.5469 35 1 -1.1064 5.1006 1.8664 36 1 -0.3600 6.0687 0.5660 37 1 -0.2510 5.5363 3.9032 38 1 2.1073 5.4851 4.6159 39 1 2.3953 7.0600 3.8356 40 1 2.0189 7.3723 6.2545 41 1 0.4607 6.5197 6.1366 42 1 -1.0627 9.1844 4.1944 43 1 -1.3541 7.5868 4.9232 44 1 0.4935 8.1795 2.5658 45 1 -1.0884 7.3667 2.4809 46 1 2.6466 4.4501 2.7396 47 1 1.0742 3.7183 3.1971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -53.243800 kcal Electronic energy + Delta-G solvation = -23374.724601 eV Core-core repulsion = 20170.581662 eV Total energy + Delta-G solvation = -3204.142940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94856 -38.26260 -35.89412 -33.68088 -31.93685 -31.40999 -30.80265 -29.03576 -27.71311 -25.67531 -24.08081 -23.57972 -22.60571 -21.27564 -20.10755 -19.69908 -19.15409 -16.73845 -16.53067 -16.15967 -15.87148 -15.30943 -14.87900 -14.68774 -14.29686 -14.04159 -13.62051 -13.39302 -13.20561 -12.80876 -12.60943 -12.46657 -12.22331 -11.61649 -11.52011 -11.47348 -11.46240 -11.21305 -11.10573 -10.95932 -10.70965 -10.58442 -10.53816 -10.43975 -10.12579 -10.05024 -9.77711 -9.59181 -9.46024 -9.05620 -8.37641 -8.29497 -7.30731 -6.00165 -4.13107 3.28153 3.33335 3.35805 3.66921 3.96355 4.39316 4.51217 4.72099 4.82179 4.97622 5.02024 5.06084 5.20167 5.25981 5.29707 5.30746 5.43117 5.47092 5.48208 5.50495 5.68103 5.75182 5.86584 5.91805 5.99739 6.07783 6.16342 6.26811 6.37635 6.38406 6.50470 6.57195 6.70315 6.75643 6.97986 7.03992 7.12031 7.17126 7.19898 7.44753 7.59572 7.77261 8.07687 8.14218 8.32976 8.64611 8.99070 9.54663 11.00069 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.003820 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.245270 B = 7328.013784 C = 8000.120093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.093 3.907 15 H 0.060 0.940 16 C -0.120 4.120 17 C 0.041 3.959 18 N -0.511 5.511 19 C 0.077 3.923 20 C -0.149 4.149 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.063 3.937 24 C -0.147 4.147 25 C 0.037 3.963 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 11.395 11.396 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.019 4.019 15 H 0.078 0.922 16 C -0.159 4.159 17 C -0.087 4.087 18 N -0.235 5.235 19 C -0.032 4.032 20 C -0.187 4.187 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.014 4.014 24 C -0.186 4.186 25 C -0.091 4.091 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.240 11.745 10.909 18.024 hybrid contribution 1.375 -0.717 0.007 1.551 sum -6.865 11.028 10.916 16.968 Atomic orbital electron populations 1.21717 0.99105 0.98406 1.00291 1.21494 0.92011 0.99308 1.01633 1.19136 0.92630 0.91078 0.86254 0.94924 1.21828 0.92711 1.38143 1.05827 0.92950 1.24920 0.97925 0.94960 0.95634 1.69869 1.34961 1.37975 1.09529 0.86722 0.86104 0.78210 0.77348 1.20309 1.21243 1.20361 1.60986 1.55309 1.04977 1.09894 1.22195 0.96022 0.89585 0.94062 0.92233 1.22435 0.98338 0.95509 0.99583 1.22823 0.92124 0.97938 0.95798 1.64758 1.23435 1.22930 1.12400 1.21795 0.95471 0.95218 0.90677 1.22302 0.98564 1.01688 0.96179 1.22620 0.97033 0.86015 0.95764 1.87919 1.43422 1.30204 1.68750 1.22572 0.87598 1.01084 0.90178 1.22243 1.01411 0.96765 0.98132 1.23330 0.98956 0.88784 0.97993 0.93233 0.94587 0.95719 0.89200 0.95189 0.92836 0.85588 0.90721 0.91729 0.94378 0.90971 0.94216 0.90682 0.90052 0.88726 0.93388 0.88801 0.93439 0.90073 0.90956 0.90607 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.85 37.16 0.37 -2.43 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.22 5.23 1.85 -68.86 -0.13 5.10 16 4 H 0.03 0.88 7.72 -51.93 -0.40 0.48 16 5 C -0.55 -14.49 8.31 -34.44 -0.29 -14.78 16 6 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.74 5.40 -99.01 -0.53 -14.27 16 14 C 0.09 1.70 3.14 -65.85 -0.21 1.49 16 15 H 0.06 1.28 7.76 -51.93 -0.40 0.87 16 16 C -0.12 -1.97 6.47 -25.37 -0.16 -2.14 16 17 C 0.04 0.57 5.56 -2.75 -0.02 0.55 16 18 N -0.51 -7.17 5.11 -222.27 -1.14 -8.30 16 19 C 0.08 0.91 1.71 -67.53 -0.12 0.79 16 20 C -0.15 -1.63 5.20 -26.49 -0.14 -1.77 16 21 C 0.06 0.61 6.85 37.30 0.26 0.86 16 22 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 23 C 0.06 0.58 6.84 37.21 0.25 0.84 16 24 C -0.15 -1.52 5.33 -26.59 -0.14 -1.67 16 25 C 0.04 0.57 4.84 -1.90 -0.01 0.56 16 26 H 0.05 0.96 7.62 -51.93 -0.40 0.57 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.33 6.55 8.19 -39.29 -0.32 6.23 16 33 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.49 7.64 -51.93 -0.40 0.09 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.48 7.99 -51.93 -0.41 0.06 16 38 H 0.07 0.80 7.10 -51.93 -0.37 0.44 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.70 7.39 -51.93 -0.38 0.31 16 46 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 47 H 0.05 0.72 8.01 -51.93 -0.42 0.30 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -27.52 356.89 -10.46 -37.98 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.82 Total: 5.55 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.57 Total: -13.47 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.04 Total: -46.78 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.52 -10.46 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.267 kcal (2) G-P(sol) polarization free energy of solvation -27.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds