Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47530 * 2 1 4 4 H 1.08993 * 109.47215 * 54.33726 * 3 2 1 5 5 C 1.50694 * 109.47234 * 174.33957 * 3 2 1 6 6 H 1.08008 * 120.00119 * 120.00002 * 5 3 2 7 7 C 1.37876 * 119.99997 * 300.00133 * 5 3 2 8 8 N 1.31516 * 119.99738 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46688 * 90.00160 * 9 7 5 11 11 H 1.48499 * 109.46969 * 210.00184 * 9 7 5 12 12 H 1.48501 * 109.47041 * 330.00275 * 9 7 5 13 13 N 1.46905 * 109.47011 * 294.34040 * 3 2 1 14 14 C 1.46898 * 111.00008 * 152.06252 * 13 3 2 15 15 H 1.09007 * 110.28383 * 326.72426 * 14 13 3 16 16 C 1.54251 * 110.32466 * 88.85033 * 14 13 3 17 17 C 1.54387 * 105.06117 * 118.89737 * 16 14 13 18 18 N 1.48556 * 104.59110 * 23.85309 * 17 16 14 19 19 C 1.46904 * 110.99934 * 200.96252 * 18 17 16 20 20 C 1.53182 * 109.54117 * 295.74518 * 19 18 17 21 21 C 1.53102 * 109.15608 * 183.23880 * 20 19 18 22 22 O 1.42912 * 109.48660 * 57.47624 * 21 20 19 23 23 C 1.42905 * 114.09555 * 298.88907 * 22 21 20 24 24 C 1.53087 * 109.41536 * 61.15594 * 23 22 21 25 25 C 1.48565 * 104.22461 * 320.51899 * 18 17 16 26 26 H 1.08997 * 109.47485 * 186.01116 * 1 2 3 27 27 H 1.09004 * 109.46689 * 306.01589 * 1 2 3 28 28 H 1.09005 * 109.46820 * 66.01233 * 1 2 3 29 29 H 1.09000 * 109.47015 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.46865 * 120.00215 * 2 1 3 31 31 H 0.97002 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99760 * 28.10616 * 13 3 2 33 33 H 1.09000 * 110.32885 * 237.79344 * 16 14 13 34 34 H 1.09003 * 110.32496 * 0.02562 * 16 14 13 35 35 H 1.08994 * 110.41281 * 142.63062 * 17 16 14 36 36 H 1.08998 * 110.40832 * 265.07664 * 17 16 14 37 37 H 1.08998 * 109.54458 * 55.92239 * 19 18 17 38 38 H 1.08994 * 109.52356 * 303.05792 * 20 19 18 39 39 H 1.09003 * 109.52023 * 63.25138 * 20 19 18 40 40 H 1.08998 * 109.41030 * 297.49922 * 21 20 19 41 41 H 1.08994 * 109.49299 * 177.50934 * 21 20 19 42 42 H 1.08999 * 109.48001 * 301.17492 * 23 22 21 43 43 H 1.08996 * 109.48340 * 181.14621 * 23 22 21 44 44 H 1.09000 * 109.52299 * 182.48118 * 24 23 22 45 45 H 1.09001 * 109.57601 * 62.32824 * 24 23 22 46 46 H 1.09002 * 110.40868 * 280.70536 * 25 18 17 47 47 H 1.08994 * 110.41341 * 158.26515 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8349 5 6 3.5405 1.4447 0.1401 6 1 4.1543 1.8863 -0.6311 7 6 4.1298 0.8830 1.2529 8 7 5.4393 0.8845 1.3749 9 14 3.0683 0.1198 2.5871 10 1 2.8497 -1.3174 2.2841 11 1 3.7519 0.2508 3.8989 12 1 1.7594 0.8195 2.6390 13 7 1.6652 2.0944 -1.2619 14 6 1.5167 3.5447 -1.0814 15 1 1.1366 3.7643 -0.0836 16 6 2.8675 4.2540 -1.3083 17 6 2.6267 5.2033 -2.5017 18 7 1.1611 5.4463 -2.4968 19 6 0.6991 5.9047 -3.8138 20 6 1.3305 7.2631 -4.1340 21 6 0.7812 7.7701 -5.4701 22 8 -0.6436 7.8540 -5.3987 23 6 -1.2900 6.6041 -5.1495 24 6 -0.8256 6.0514 -3.7995 25 6 0.5731 4.1250 -2.1566 26 1 -0.3634 -1.0220 0.1076 27 1 -0.3633 0.6043 0.8313 28 1 -0.3633 0.4178 -0.9390 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8539 0.4897 2.1579 32 1 0.8229 1.6892 -1.6419 33 1 3.1497 4.8233 -0.4227 34 1 3.6407 3.5260 -1.5541 35 1 3.1676 6.1387 -2.3586 36 1 2.9299 4.7266 -3.4338 37 1 0.9886 5.1797 -4.5745 38 1 1.0830 7.9746 -3.3463 39 1 2.4131 7.1548 -4.2013 40 1 1.0652 7.0793 -6.2640 41 1 1.1933 8.7566 -5.6820 42 1 -1.0329 5.8981 -5.9391 43 1 -2.3699 6.7507 -5.1302 44 1 -1.2836 5.0773 -3.6277 45 1 -1.1181 6.7368 -3.0040 46 1 0.5550 3.4796 -3.0348 47 1 -0.4320 4.2486 -1.7538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -38.533852 kcal Electronic energy + Delta-G solvation = -23486.836516 eV Core-core repulsion = 20283.331448 eV Total energy + Delta-G solvation = -3203.505068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95704 -38.35332 -36.28809 -33.75565 -32.09322 -31.44619 -31.09592 -28.92504 -27.97415 -26.28765 -24.12115 -23.58834 -22.49608 -21.32937 -20.18676 -19.89560 -19.39397 -16.77865 -16.69641 -16.16670 -15.89456 -15.50860 -14.94111 -14.69769 -14.42631 -14.14622 -13.94182 -13.65550 -13.32285 -12.83299 -12.58255 -12.52036 -12.37543 -12.11625 -11.91316 -11.65158 -11.54743 -11.47686 -11.11354 -10.97158 -10.82345 -10.54226 -10.46445 -10.33831 -10.28266 -10.15912 -9.89109 -9.75569 -9.41385 -9.07906 -8.51160 -8.37013 -7.42895 -6.03142 -3.99532 3.25306 3.36314 3.38192 3.65777 3.96931 4.41114 4.49591 4.70871 4.81269 4.96456 4.99663 5.01701 5.10403 5.24999 5.29390 5.32802 5.37480 5.46787 5.48413 5.61439 5.62621 5.68040 5.70768 5.79650 5.84696 5.86704 5.94060 5.95350 6.03490 6.14594 6.30551 6.39102 6.43460 6.58912 6.62770 6.68294 6.77592 6.90530 6.97777 7.04781 7.16890 7.25004 7.73467 7.97761 8.26358 8.75600 9.09170 9.60121 11.09965 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.003818 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.216087 B = 7331.508104 C = 7994.656512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.189 3.811 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.084 0.916 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.095 3.905 15 H 0.046 0.954 16 C -0.107 4.107 17 C 0.035 3.965 18 N -0.505 5.505 19 C 0.074 3.926 20 C -0.147 4.147 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.063 3.937 24 C -0.148 4.148 25 C 0.031 3.969 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.262 0.738 32 H 0.318 0.682 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.050 9.625 -11.301 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.081 3.919 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.101 0.899 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.016 4.016 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.093 4.093 18 N -0.229 5.229 19 C -0.035 4.035 20 C -0.185 4.185 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.014 4.014 24 C -0.186 4.186 25 C -0.097 4.097 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.500 10.209 -11.045 18.933 hybrid contribution -0.897 -1.480 0.827 1.918 sum -12.397 8.729 -10.218 18.284 Atomic orbital electron populations 1.21911 0.98227 1.00549 1.00687 1.22156 0.92924 1.00630 1.01813 1.19724 0.97072 0.89126 0.85996 0.97999 1.21074 0.89018 1.37131 1.05764 0.89850 1.24961 0.94724 0.96063 0.97754 1.69881 1.08880 1.46019 1.29278 0.86974 0.80798 0.79721 0.81388 1.20700 1.22550 1.19389 1.60725 1.37592 1.01323 1.30400 1.22116 0.94414 0.88995 0.96055 0.93600 1.22380 0.98453 0.97301 0.96464 1.23157 0.88100 0.99247 0.98761 1.65423 1.05983 1.25496 1.25964 1.21799 0.94806 0.96055 0.90847 1.22230 1.00692 0.97138 0.98447 1.22586 0.81049 1.01765 0.96062 1.87919 1.19074 1.30864 1.92455 1.22575 0.97587 0.85807 0.95464 1.22255 0.95351 1.02278 0.98756 1.23297 0.98406 0.89601 0.98410 0.93640 0.93571 0.93238 0.91401 0.92792 0.92789 0.86378 0.91830 0.88629 0.90810 0.94116 0.94079 0.90117 0.90761 0.93386 0.88744 0.93370 0.88799 0.90932 0.90128 0.93299 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.65 37.16 0.36 -2.25 16 2 C -0.14 -2.87 4.99 -26.73 -0.13 -3.01 16 3 C 0.19 4.31 1.62 -68.86 -0.11 4.20 16 4 H 0.00 0.06 6.44 -51.93 -0.33 -0.27 16 5 C -0.49 -13.41 8.75 -34.44 -0.30 -13.71 16 6 H 0.08 2.49 6.52 -52.48 -0.34 2.15 16 7 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.88 21.76 24.42 -169.99 -4.15 17.61 16 10 H -0.28 -6.75 6.82 56.52 0.39 -6.36 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 13 N -0.67 -13.00 6.03 -99.51 -0.60 -13.60 16 14 C 0.10 1.69 3.39 -66.34 -0.22 1.47 16 15 H 0.05 0.88 7.41 -51.93 -0.39 0.50 16 16 C -0.11 -1.95 6.29 -25.35 -0.16 -2.11 16 17 C 0.03 0.52 5.53 -2.18 -0.01 0.50 16 18 N -0.50 -6.98 5.20 -221.80 -1.15 -8.14 16 19 C 0.07 0.86 1.79 -67.53 -0.12 0.74 16 20 C -0.15 -1.53 5.31 -26.58 -0.14 -1.67 16 21 C 0.06 0.58 6.84 37.21 0.25 0.84 16 22 O -0.38 -4.22 10.77 -35.23 -0.38 -4.60 16 23 C 0.06 0.58 6.84 37.20 0.25 0.84 16 24 C -0.15 -1.53 5.21 -26.60 -0.14 -1.67 16 25 C 0.03 0.45 4.83 -2.18 -0.01 0.44 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.72 6.67 -51.93 -0.35 0.38 16 29 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.05 1.22 3.22 -51.93 -0.17 1.06 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.32 5.47 6.20 -39.29 -0.24 5.22 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 35 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16 36 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 37 H 0.04 0.50 7.98 -51.93 -0.41 0.08 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.75 7.23 -51.93 -0.38 0.37 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.70 7.80 -51.93 -0.40 0.29 16 47 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -29.62 343.33 -9.25 -38.87 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.34 Total: 4.87 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.58 Total: -13.63 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.98 Total: -48.29 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.38 Total: -4.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.15 Total: 17.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.62 -9.25 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.338 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds