Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47530 * 2 1 4 4 H 1.08993 * 109.47215 * 54.33726 * 3 2 1 5 5 C 1.50694 * 109.47234 * 174.33957 * 3 2 1 6 6 H 1.08008 * 120.00119 * 120.00002 * 5 3 2 7 7 C 1.37876 * 119.99997 * 300.00133 * 5 3 2 8 8 N 1.31516 * 119.99738 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00077 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46688 * 90.00160 * 9 7 5 11 11 H 1.48499 * 109.46969 * 210.00184 * 9 7 5 12 12 H 1.48501 * 109.47041 * 330.00275 * 9 7 5 13 13 N 1.46905 * 109.47011 * 294.34040 * 3 2 1 14 14 C 1.46898 * 111.00008 * 152.06252 * 13 3 2 15 15 H 1.09007 * 110.28383 * 326.72426 * 14 13 3 16 16 C 1.54251 * 110.32466 * 88.85033 * 14 13 3 17 17 C 1.54387 * 105.06117 * 118.89737 * 16 14 13 18 18 N 1.48556 * 104.59110 * 23.85309 * 17 16 14 19 19 C 1.46904 * 110.99934 * 200.96252 * 18 17 16 20 20 C 1.53182 * 109.54117 * 295.74518 * 19 18 17 21 21 C 1.53102 * 109.15608 * 183.23880 * 20 19 18 22 22 O 1.42912 * 109.48660 * 57.47624 * 21 20 19 23 23 C 1.42905 * 114.09555 * 298.88907 * 22 21 20 24 24 C 1.53087 * 109.41536 * 61.15594 * 23 22 21 25 25 C 1.48565 * 104.22461 * 320.51899 * 18 17 16 26 26 H 1.08997 * 109.47485 * 186.01116 * 1 2 3 27 27 H 1.09004 * 109.46689 * 306.01589 * 1 2 3 28 28 H 1.09005 * 109.46820 * 66.01233 * 1 2 3 29 29 H 1.09000 * 109.47015 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.46865 * 120.00215 * 2 1 3 31 31 H 0.97002 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99760 * 28.10616 * 13 3 2 33 33 H 1.09000 * 110.32885 * 237.79344 * 16 14 13 34 34 H 1.09003 * 110.32496 * 0.02562 * 16 14 13 35 35 H 1.08994 * 110.41281 * 142.63062 * 17 16 14 36 36 H 1.08998 * 110.40832 * 265.07664 * 17 16 14 37 37 H 1.08998 * 109.54458 * 55.92239 * 19 18 17 38 38 H 1.08994 * 109.52356 * 303.05792 * 20 19 18 39 39 H 1.09003 * 109.52023 * 63.25138 * 20 19 18 40 40 H 1.08998 * 109.41030 * 297.49922 * 21 20 19 41 41 H 1.08994 * 109.49299 * 177.50934 * 21 20 19 42 42 H 1.08999 * 109.48001 * 301.17492 * 23 22 21 43 43 H 1.08996 * 109.48340 * 181.14621 * 23 22 21 44 44 H 1.09000 * 109.52299 * 182.48118 * 24 23 22 45 45 H 1.09001 * 109.57601 * 62.32824 * 24 23 22 46 46 H 1.09002 * 110.40868 * 280.70536 * 25 18 17 47 47 H 1.08994 * 110.41341 * 158.26515 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8349 5 6 3.5405 1.4447 0.1401 6 1 4.1543 1.8863 -0.6311 7 6 4.1298 0.8830 1.2529 8 7 5.4393 0.8845 1.3749 9 14 3.0683 0.1198 2.5871 10 1 2.8497 -1.3174 2.2841 11 1 3.7519 0.2508 3.8989 12 1 1.7594 0.8195 2.6390 13 7 1.6652 2.0944 -1.2619 14 6 1.5167 3.5447 -1.0814 15 1 1.1366 3.7643 -0.0836 16 6 2.8675 4.2540 -1.3083 17 6 2.6267 5.2033 -2.5017 18 7 1.1611 5.4463 -2.4968 19 6 0.6991 5.9047 -3.8138 20 6 1.3305 7.2631 -4.1340 21 6 0.7812 7.7701 -5.4701 22 8 -0.6436 7.8540 -5.3987 23 6 -1.2900 6.6041 -5.1495 24 6 -0.8256 6.0514 -3.7995 25 6 0.5731 4.1250 -2.1566 26 1 -0.3634 -1.0220 0.1076 27 1 -0.3633 0.6043 0.8313 28 1 -0.3633 0.4178 -0.9390 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8539 0.4897 2.1579 32 1 0.8229 1.6892 -1.6419 33 1 3.1497 4.8233 -0.4227 34 1 3.6407 3.5260 -1.5541 35 1 3.1676 6.1387 -2.3586 36 1 2.9299 4.7266 -3.4338 37 1 0.9886 5.1797 -4.5745 38 1 1.0830 7.9746 -3.3463 39 1 2.4131 7.1548 -4.2013 40 1 1.0652 7.0793 -6.2640 41 1 1.1933 8.7566 -5.6820 42 1 -1.0329 5.8981 -5.9391 43 1 -2.3699 6.7507 -5.1302 44 1 -1.2836 5.0773 -3.6277 45 1 -1.1181 6.7368 -3.0040 46 1 0.5550 3.4796 -3.0348 47 1 -0.4320 4.2486 -1.7538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -60.865187 kcal Electronic energy + Delta-G solvation = -23487.804876 eV Core-core repulsion = 20283.331448 eV Total energy + Delta-G solvation = -3204.473428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.94580 -39.50247 -37.79364 -35.00479 -34.11040 -32.50461 -32.13716 -30.16595 -29.55796 -27.88176 -25.09997 -24.51764 -24.12426 -22.52623 -21.65982 -21.06069 -20.81335 -18.79713 -17.69965 -17.26889 -16.91478 -16.77504 -16.33448 -16.00603 -15.65874 -15.44383 -15.14417 -14.88417 -14.77925 -14.33696 -14.06248 -13.83314 -13.57652 -13.29817 -13.23787 -13.06099 -12.70205 -12.63994 -12.48585 -12.32889 -12.21839 -12.10932 -12.00241 -11.71265 -11.53503 -11.35967 -11.23627 -11.18645 -11.06301 -10.64070 -10.54761 -9.48691 -9.08468 -8.23809 -6.23900 1.27815 1.33735 1.42794 2.32780 2.81717 3.01416 3.09291 3.52313 3.63452 3.70090 3.89243 4.03786 4.09756 4.20259 4.24328 4.27229 4.31685 4.33515 4.38369 4.42927 4.49700 4.56662 4.65093 4.69765 4.73476 4.79678 4.83364 4.84602 4.96128 5.02115 5.06867 5.09491 5.10724 5.14231 5.16447 5.25659 5.31690 5.36577 5.49829 5.72784 5.81207 6.08697 6.14651 6.26805 6.55358 6.83991 6.96600 7.39948 8.92965 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.003818 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.216087 B = 7331.508104 C = 7994.656512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.196 3.804 4 H -0.008 1.008 5 C -0.489 4.489 6 H 0.042 0.958 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.672 5.672 14 C 0.092 3.908 15 H 0.032 0.968 16 C -0.109 4.109 17 C 0.048 3.952 18 N -0.509 5.509 19 C 0.072 3.928 20 C -0.144 4.144 21 C 0.063 3.937 22 O -0.402 6.402 23 C 0.062 3.938 24 C -0.143 4.143 25 C 0.045 3.955 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.336 0.664 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 9.653 -12.344 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.086 3.914 4 H 0.009 0.991 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.305 5.305 14 C -0.018 4.018 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.080 4.080 18 N -0.233 5.233 19 C -0.037 4.037 20 C -0.182 4.182 21 C -0.014 4.014 22 O -0.321 6.321 23 C -0.015 4.015 24 C -0.181 4.181 25 C -0.083 4.083 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.659 10.241 -12.119 21.601 hybrid contribution 0.148 -1.418 1.066 1.780 sum -14.511 8.822 -11.053 20.263 Atomic orbital electron populations 1.21838 0.94351 1.02351 1.02032 1.22040 0.96373 0.98277 1.00850 1.19487 0.93889 0.90938 0.87068 0.99058 1.21365 0.91544 1.35488 1.04368 0.93980 1.25765 0.95791 0.96995 1.00370 1.70044 1.10972 1.48049 1.30316 0.85944 0.79532 0.79566 0.77855 1.19280 1.23129 1.17579 1.60518 1.38870 1.02271 1.28814 1.22134 0.94836 0.88079 0.96784 0.95023 1.22262 0.97911 0.97194 0.97407 1.22987 0.89318 0.98727 0.96971 1.65453 1.04947 1.25055 1.27818 1.21905 0.95962 0.96474 0.89343 1.22202 1.00833 0.96218 0.98926 1.22668 0.80448 1.02835 0.95425 1.87903 1.19811 1.31897 1.92467 1.22690 0.98407 0.85439 0.94938 1.22219 0.94118 1.02552 0.99232 1.23174 0.98127 0.89698 0.97336 0.91369 0.93491 0.90956 0.91754 0.94442 0.92893 0.84391 0.93494 0.92388 0.89748 0.93905 0.94037 0.91178 0.90555 0.92430 0.87356 0.92380 0.87229 0.90105 0.91137 0.92560 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 9.65 71.98 0.69 -3.70 16 2 C -0.14 -5.50 4.99 30.59 0.15 -5.34 16 3 C 0.20 8.85 1.62 44.17 0.07 8.92 16 4 H -0.01 -0.38 6.44 -2.39 -0.02 -0.40 16 5 C -0.49 -27.66 8.75 25.60 0.22 -27.43 16 6 H 0.04 2.67 6.52 -2.91 -0.02 2.66 16 7 C 0.01 0.40 5.45 84.65 0.46 0.86 16 8 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 9 Si 0.94 45.34 24.42 68.60 1.67 47.01 16 10 H -0.27 -12.16 6.82 99.48 0.68 -11.48 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 12 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 13 N -0.67 -25.71 6.03 -468.76 -2.83 -28.54 16 14 C 0.09 3.26 3.39 45.81 0.16 3.41 16 15 H 0.03 1.22 7.41 -2.38 -0.02 1.20 16 16 C -0.11 -4.11 6.29 31.49 0.20 -3.91 16 17 C 0.05 1.40 5.53 86.45 0.48 1.87 16 18 N -0.51 -13.27 5.20 -855.64 -4.45 -17.72 16 19 C 0.07 1.51 1.79 45.03 0.08 1.59 16 20 C -0.14 -2.74 5.31 30.69 0.16 -2.57 16 21 C 0.06 1.03 6.84 72.02 0.49 1.52 16 22 O -0.40 -7.85 10.77 -148.98 -1.60 -9.46 16 23 C 0.06 0.97 6.84 72.01 0.49 1.46 16 24 C -0.14 -2.57 5.21 30.68 0.16 -2.41 16 25 C 0.04 1.20 4.83 86.45 0.42 1.61 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.80 6.67 -2.38 -0.02 1.78 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 1.62 3.22 -2.39 -0.01 1.61 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.34 10.75 6.20 -89.70 -0.56 10.19 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 2.62 6.22 -2.39 -0.01 2.61 16 35 H 0.08 2.28 7.78 -2.39 -0.02 2.26 16 36 H 0.04 1.23 7.91 -2.39 -0.02 1.22 16 37 H 0.04 0.90 7.98 -2.39 -0.02 0.88 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.41 7.23 -2.39 -0.02 1.39 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.32 7.14 -2.39 -0.02 1.30 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.44 7.80 -2.39 -0.02 1.42 16 47 H 0.09 2.13 7.75 -2.39 -0.02 2.12 16 Total: -1.00 -66.57 343.33 -2.37 -68.94 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.30 Total: 23.72 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.24 Total: -24.11 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -6.98 Total: -106.11 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.60 Total: -9.46 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -66.57 -2.37 -68.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.076 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds