Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46982 * 2 1 4 4 H 1.08999 * 109.47793 * 53.41809 * 3 2 1 5 5 C 1.50707 * 109.47019 * 173.41895 * 3 2 1 6 6 H 1.08003 * 120.00198 * 119.99201 * 5 3 2 7 7 C 1.37870 * 119.99733 * 299.99911 * 5 3 2 8 8 N 1.31522 * 120.00102 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00312 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47567 * 89.99718 * 9 7 5 11 11 H 1.48502 * 109.47296 * 210.00375 * 9 7 5 12 12 H 1.48500 * 109.46808 * 329.99841 * 9 7 5 13 13 N 1.46906 * 109.47099 * 293.41351 * 3 2 1 14 14 C 1.46902 * 110.99631 * 156.72865 * 13 3 2 15 15 H 1.08995 * 110.64047 * 33.78771 * 14 13 3 16 16 C 1.55153 * 110.72145 * 270.44627 * 14 13 3 17 17 C 1.55128 * 101.49015 * 205.97200 * 16 14 13 18 18 N 1.47423 * 104.72081 * 37.29731 * 17 16 14 19 19 C 1.34778 * 125.65067 * 155.81301 * 18 17 16 20 20 O 1.21286 * 119.99716 * 355.17464 * 19 18 17 21 21 C 1.50698 * 119.99967 * 175.16521 * 19 18 17 22 22 C 1.53007 * 109.46827 * 177.90175 * 21 19 18 23 23 C 1.53003 * 109.47101 * 297.90011 * 21 19 18 24 24 C 1.52993 * 109.47127 * 57.90557 * 21 19 18 25 25 C 1.47022 * 108.70125 * 335.55606 * 18 17 16 26 26 H 1.08994 * 109.47247 * 186.09066 * 1 2 3 27 27 H 1.09005 * 109.46890 * 306.09688 * 1 2 3 28 28 H 1.09005 * 109.46715 * 66.08455 * 1 2 3 29 29 H 1.08999 * 109.46726 * 239.99489 * 2 1 3 30 30 H 1.08995 * 109.46957 * 119.99828 * 2 1 3 31 31 H 0.96992 * 119.99968 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99968 * 32.77736 * 13 3 2 33 33 H 1.09000 * 111.00827 * 324.21879 * 16 14 13 34 34 H 1.09004 * 111.00274 * 88.05917 * 16 14 13 35 35 H 1.08997 * 110.49454 * 278.45799 * 17 16 14 36 36 H 1.09002 * 110.34295 * 156.05651 * 17 16 14 37 37 H 1.08997 * 109.46723 * 60.00457 * 22 21 19 38 38 H 1.08997 * 109.46674 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47203 * 300.00350 * 22 21 19 40 40 H 1.09000 * 109.46659 * 71.51773 * 23 21 19 41 41 H 1.09003 * 109.46574 * 191.50929 * 23 21 19 42 42 H 1.08991 * 109.47308 * 311.51036 * 23 21 19 43 43 H 1.08997 * 109.47627 * 46.75100 * 24 21 19 44 44 H 1.08997 * 109.47215 * 166.75652 * 24 21 19 45 45 H 1.09005 * 109.47222 * 286.75156 * 24 21 19 46 46 H 1.08997 * 109.88361 * 120.70811 * 25 18 17 47 47 H 1.09003 * 109.88130 * 241.71457 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5838 1.9892 0.8252 5 6 3.5383 1.4456 0.1628 6 1 4.1636 1.8829 -0.6014 7 6 4.1106 0.8899 1.2874 8 7 5.4181 0.8922 1.4293 9 14 3.0290 0.1339 2.6095 10 1 2.8148 -1.3049 2.3110 11 1 3.6926 0.2720 3.9308 12 1 1.7195 0.8338 2.6377 13 7 1.6843 2.0876 -1.2710 14 6 1.6414 3.5487 -1.1257 15 1 2.3897 3.8857 -0.4084 16 6 0.2230 4.0172 -0.7062 17 6 0.2002 5.4665 -1.2588 18 7 0.9318 5.3918 -2.5365 19 6 0.7922 6.2424 -3.5726 20 8 -0.0514 7.1130 -3.5330 21 6 1.6843 6.1120 -4.7801 22 6 1.2861 7.1576 -5.8237 23 6 3.1401 6.3343 -4.3650 24 6 1.5324 4.7117 -5.3775 25 6 1.8436 4.2393 -2.4909 26 1 -0.3633 -1.0218 0.1090 27 1 -0.3633 0.6055 0.8304 28 1 -0.3633 0.4166 -0.9395 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8207 0.5016 2.2206 32 1 0.8078 1.7333 -1.6235 33 1 -0.5460 3.4041 -1.1761 34 1 0.1150 4.0127 0.3785 35 1 0.7054 6.1450 -0.5715 36 1 -0.8264 5.7914 -1.4280 37 1 1.3944 8.1552 -5.3980 38 1 1.9317 7.0635 -6.6969 39 1 0.2490 6.9993 -6.1193 40 1 3.4869 5.4796 -3.7843 41 1 3.7591 6.4436 -5.2556 42 1 3.2114 7.2379 -3.7598 43 1 0.4741 4.4626 -5.4552 44 1 1.9849 4.6886 -6.3688 45 1 2.0301 3.9861 -4.7340 46 1 1.6043 3.5453 -3.2966 47 1 2.8749 4.5785 -2.5882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = -34.445528 kcal Electronic energy + Delta-G solvation = -23779.349821 eV Core-core repulsion = 20576.022036 eV Total energy + Delta-G solvation = -3203.327785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.44182 -38.04437 -35.91854 -35.68434 -32.52392 -31.83362 -29.98694 -28.23960 -27.45819 -27.10910 -26.55825 -24.11212 -22.64056 -21.13206 -20.58821 -20.03433 -18.78497 -16.76925 -16.63306 -16.26826 -15.56544 -15.07654 -14.69412 -14.43132 -14.02988 -13.98011 -13.87862 -13.20377 -13.05865 -12.81688 -12.67779 -12.41060 -12.27824 -12.23957 -12.11149 -11.92260 -11.83295 -11.68853 -11.56101 -11.40183 -11.02966 -11.00742 -10.73872 -10.62093 -10.41416 -10.27093 -10.07614 -9.58585 -9.45563 -9.26716 -8.59056 -8.48234 -7.52302 -6.10416 -4.08181 2.71150 3.06985 3.20851 3.30944 3.33872 4.33459 4.35045 4.64156 4.74692 4.80247 4.85388 5.02924 5.18694 5.21315 5.30463 5.43252 5.46689 5.53080 5.60689 5.66416 5.68764 5.69757 5.75765 5.77976 5.81627 5.84469 5.88462 5.90132 6.02904 6.06592 6.13386 6.18468 6.24435 6.37470 6.39674 6.49396 6.54148 6.63511 6.75544 7.09428 7.60982 7.65407 7.83868 8.11951 8.24664 8.66143 9.00843 9.52286 11.02760 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.004360 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.529874 B = 6420.282251 C = 6785.142637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.192 3.808 4 H 0.003 0.997 5 C -0.499 4.499 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.664 5.664 14 C 0.088 3.912 15 H 0.103 0.897 16 C -0.166 4.166 17 C 0.109 3.891 18 N -0.613 5.613 19 C 0.538 3.462 20 O -0.551 6.551 21 C -0.082 4.082 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.153 4.153 25 C 0.096 3.904 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.322 0.678 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 6.567 -9.643 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.294 5.294 14 C -0.024 4.024 15 H 0.121 0.879 16 C -0.206 4.206 17 C -0.014 4.014 18 N -0.347 5.347 19 C 0.327 3.673 20 O -0.429 6.429 21 C -0.085 4.085 22 C -0.182 4.182 23 C -0.205 4.205 24 C -0.210 4.210 25 C -0.027 4.027 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.312 6.999 -9.803 14.634 hybrid contribution -1.288 -0.493 1.437 1.992 sum -9.600 6.506 -8.366 14.299 Atomic orbital electron populations 1.21920 0.98184 1.00629 1.00699 1.22108 0.92928 1.00350 1.01930 1.19630 0.96982 0.89328 0.85736 0.97977 1.21014 0.89161 1.38075 1.05518 0.90056 1.24951 0.94742 0.95880 0.97760 1.69879 1.09436 1.45770 1.28674 0.86965 0.80884 0.79799 0.81190 1.20582 1.22509 1.19297 1.60414 1.35910 1.01661 1.31410 1.22543 0.95114 0.89744 0.94991 0.87892 1.23619 0.99644 0.95601 1.01727 1.22187 0.97178 0.97329 0.84736 1.48491 1.41813 1.29126 1.15290 1.20289 0.83755 0.80164 0.83077 1.90660 1.36186 1.35143 1.80951 1.20732 0.95856 0.98243 0.93641 1.21656 1.01578 0.98054 0.96939 1.22014 0.93347 1.02917 1.02231 1.22139 1.02503 0.94699 1.01685 1.22568 0.93548 0.86908 0.99688 0.93616 0.93555 0.93204 0.91273 0.92722 0.92668 0.85911 0.90960 0.90030 0.91454 0.90888 0.92091 0.92081 0.92201 0.90826 0.91402 0.92366 0.92458 0.91521 0.90315 0.89887 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.64 37.16 0.36 -2.12 16 2 C -0.14 -2.68 5.01 -26.73 -0.13 -2.82 16 3 C 0.19 4.07 1.50 -68.86 -0.10 3.97 16 4 H 0.00 0.06 6.92 -51.93 -0.36 -0.30 16 5 C -0.50 -13.10 9.03 -34.44 -0.31 -13.41 16 6 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.88 20.96 24.42 -169.99 -4.15 16.81 16 10 H -0.28 -6.50 6.82 56.52 0.39 -6.11 16 11 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.06 6.53 56.52 0.37 -5.70 16 13 N -0.66 -11.75 6.09 -99.03 -0.60 -12.35 16 14 C 0.09 1.39 3.01 -65.88 -0.20 1.19 16 15 H 0.10 1.88 7.65 -51.93 -0.40 1.49 16 16 C -0.17 -2.24 6.66 -24.47 -0.16 -2.40 16 17 C 0.11 1.47 6.94 -2.41 -0.02 1.45 16 18 N -0.61 -8.58 3.32 -170.38 -0.56 -9.15 16 19 C 0.54 7.91 6.50 -10.99 -0.07 7.84 16 20 O -0.55 -9.82 16.22 5.55 0.09 -9.73 16 21 C -0.08 -0.94 0.75 -155.66 -0.12 -1.06 16 22 C -0.12 -1.34 7.70 37.16 0.29 -1.05 16 23 C -0.15 -1.57 8.25 37.16 0.31 -1.26 16 24 C -0.15 -1.57 7.89 37.15 0.29 -1.28 16 25 C 0.10 1.32 4.94 -3.06 -0.02 1.30 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.05 0.69 6.71 -51.93 -0.35 0.34 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 1.19 3.22 -51.93 -0.17 1.02 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.32 5.06 6.18 -39.29 -0.24 4.81 16 33 H 0.07 0.93 7.78 -51.93 -0.40 0.53 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.00 7.99 -51.93 -0.42 0.58 16 37 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 40 H 0.07 0.81 5.04 -51.93 -0.26 0.55 16 41 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 43 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 44 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 45 H 0.08 0.83 4.77 -51.93 -0.25 0.59 16 46 H 0.08 1.10 5.52 -51.93 -0.29 0.81 16 47 H 0.08 1.07 5.57 -51.93 -0.29 0.78 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -30.00 348.80 -7.26 -37.26 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.08 Total: 5.55 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.02 Total: -7.87 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.39 Total: -47.27 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.15 Total: 16.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.00 -7.26 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.814 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds