Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47324 * 2 1 4 4 H 1.08998 * 109.47252 * 306.62350 * 3 2 1 5 5 C 1.50700 * 109.47327 * 186.62154 * 3 2 1 6 6 H 1.08001 * 120.00076 * 239.99764 * 5 3 2 7 7 C 1.37874 * 119.99845 * 59.99994 * 5 3 2 8 8 N 1.31516 * 120.00232 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99889 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47201 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46947 * 299.99707 * 9 7 5 13 13 N 1.46906 * 109.47544 * 66.61904 * 3 2 1 14 14 C 1.46892 * 111.00439 * 208.55225 * 13 3 2 15 15 H 1.09001 * 110.64087 * 34.65872 * 14 13 3 16 16 C 1.55153 * 110.87135 * 271.41496 * 14 13 3 17 17 C 1.55134 * 101.48768 * 205.89838 * 16 14 13 18 18 N 1.47427 * 104.72011 * 37.28909 * 17 16 14 19 19 C 1.34779 * 125.64858 * 155.81533 * 18 17 16 20 20 O 1.21288 * 119.99792 * 355.19607 * 19 18 17 21 21 C 1.50696 * 120.00373 * 175.19085 * 19 18 17 22 22 C 1.52993 * 109.47437 * 180.70128 * 21 19 18 23 23 C 1.53008 * 109.47058 * 300.69875 * 21 19 18 24 24 C 1.52997 * 109.47051 * 60.69659 * 21 19 18 25 25 C 1.47019 * 108.70359 * 335.55757 * 18 17 16 26 26 H 1.09004 * 109.47403 * 304.30567 * 1 2 3 27 27 H 1.09004 * 109.47470 * 64.30941 * 1 2 3 28 28 H 1.09006 * 109.47461 * 184.30816 * 1 2 3 29 29 H 1.08997 * 109.47067 * 239.99801 * 2 1 3 30 30 H 1.09001 * 109.46975 * 120.00202 * 2 1 3 31 31 H 0.97000 * 120.00386 * 180.02562 * 8 7 5 32 32 H 1.00907 * 110.99549 * 332.50649 * 13 3 2 33 33 H 1.09006 * 111.00388 * 324.13420 * 16 14 13 34 34 H 1.08997 * 111.01328 * 87.98817 * 16 14 13 35 35 H 1.08998 * 110.49431 * 278.45407 * 17 16 14 36 36 H 1.08997 * 110.34889 * 156.05324 * 17 16 14 37 37 H 1.09000 * 109.47616 * 60.00100 * 22 21 19 38 38 H 1.08999 * 109.47190 * 180.02562 * 22 21 19 39 39 H 1.09007 * 109.47092 * 299.99641 * 22 21 19 40 40 H 1.08998 * 109.46980 * 75.37226 * 23 21 19 41 41 H 1.08997 * 109.47175 * 195.37410 * 23 21 19 42 42 H 1.08999 * 109.46929 * 315.37784 * 23 21 19 43 43 H 1.08998 * 109.47480 * 51.39546 * 24 21 19 44 44 H 1.08998 * 109.47121 * 171.39414 * 24 21 19 45 45 H 1.09009 * 109.47260 * 291.39088 * 24 21 19 46 46 H 1.09005 * 109.88368 * 120.70125 * 25 18 17 47 47 H 1.08999 * 109.87970 * 241.70910 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5832 1.9893 -0.8248 5 6 3.5381 1.4456 -0.1638 6 1 4.1639 1.8829 0.6000 7 6 4.1096 0.8902 -1.2889 8 7 3.3475 0.3581 -2.2193 9 14 5.9666 0.8934 -1.4917 10 1 6.5886 0.1479 -0.3681 11 1 6.3254 0.2411 -2.7766 12 1 6.4621 2.2933 -1.4914 13 7 1.6851 2.0874 1.2713 14 6 1.5195 3.5367 1.0982 15 1 1.0944 3.7607 0.1198 16 6 2.8707 4.2744 1.2915 17 6 2.3935 5.6803 1.7412 18 7 1.2213 5.4220 2.5971 19 6 0.7553 6.2425 3.5595 20 8 1.3621 7.2545 3.8398 21 6 -0.5197 5.9025 4.2874 22 6 -0.8317 6.9980 5.3087 23 6 -1.6689 5.8000 3.2824 24 6 -0.3531 4.5641 5.0098 25 6 0.6410 4.1241 2.2227 26 1 -0.3634 0.5792 0.8489 27 1 -0.3634 0.4455 -0.9261 28 1 -0.3634 -1.0248 0.0772 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.7496 -0.0330 -3.0107 32 1 0.8545 1.6733 1.6673 33 1 3.4701 3.7954 2.0657 34 1 3.4220 4.3326 0.3530 35 1 2.1077 6.2806 0.8775 36 1 3.1759 6.1819 2.3107 37 1 -0.9504 7.9515 4.7940 38 1 -1.7536 6.7519 5.8354 39 1 -0.0130 7.0711 6.0247 40 1 -1.5873 4.8629 2.7316 41 1 -2.6200 5.8274 3.8140 42 1 -1.6178 6.6366 2.5855 43 1 0.5556 4.5865 5.6113 44 1 -1.2130 4.3911 5.6570 45 1 -0.2835 3.7612 4.2759 46 1 0.6437 3.4548 3.0831 47 1 -0.3791 4.2635 1.8650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -40.346129 kcal Electronic energy + Delta-G solvation = -23733.988321 eV Core-core repulsion = 20530.404666 eV Total energy + Delta-G solvation = -3203.583655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41053 -37.84418 -35.72065 -35.64418 -32.47920 -31.40801 -29.83462 -28.09584 -27.54912 -27.14265 -25.96145 -24.14088 -22.76053 -21.14152 -20.23138 -19.65905 -18.76527 -16.57906 -16.49082 -16.01225 -15.49618 -14.97047 -14.65860 -14.32184 -14.00424 -13.92496 -13.58412 -13.33553 -13.01574 -12.73191 -12.55575 -12.34509 -12.31391 -12.21009 -11.86870 -11.85699 -11.56191 -11.26007 -11.17612 -11.06409 -10.99026 -10.86134 -10.71605 -10.58199 -10.37639 -9.95428 -9.74925 -9.69849 -9.47997 -9.12082 -8.46340 -8.36245 -7.39421 -6.00124 -4.03819 2.72297 3.09787 3.32109 3.36892 3.40154 4.34625 4.42643 4.62478 4.74576 4.84787 4.97905 5.03282 5.26376 5.29619 5.34749 5.37615 5.44985 5.54177 5.62957 5.66100 5.70905 5.75008 5.80991 5.95944 6.01456 6.07085 6.07552 6.09352 6.10828 6.18121 6.18784 6.33990 6.38607 6.68408 6.72931 6.78774 6.99728 7.09062 7.40508 7.65825 7.72456 7.87650 8.20716 8.26399 8.33533 8.64915 9.03467 9.61146 11.05318 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.004399 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.185308 B = 6363.236658 C = 7215.014749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.490 4.490 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.087 3.913 15 H 0.052 0.948 16 C -0.110 4.110 17 C 0.100 3.900 18 N -0.609 5.609 19 C 0.536 3.464 20 O -0.549 6.549 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.152 4.152 25 C 0.085 3.915 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.319 0.681 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 6.827 9.574 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.024 4.024 15 H 0.070 0.930 16 C -0.149 4.149 17 C -0.022 4.022 18 N -0.342 5.342 19 C 0.325 3.675 20 O -0.427 6.427 21 C -0.086 4.086 22 C -0.182 4.182 23 C -0.204 4.204 24 C -0.209 4.209 25 C -0.038 4.038 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.082 7.367 9.802 15.260 hybrid contribution 0.146 -0.102 -0.786 0.806 sum -8.936 7.266 9.016 14.627 Atomic orbital electron populations 1.21885 0.99597 0.99522 0.99721 1.21811 0.91234 1.00460 1.03195 1.19232 0.95809 0.89987 0.83705 0.97726 1.21164 0.91186 1.36722 1.03826 0.91894 1.24947 0.97897 0.95679 0.95979 1.69851 1.34652 1.39741 1.09447 0.86641 0.85902 0.78189 0.77132 1.20357 1.21539 1.20398 1.60831 1.38739 1.00066 1.31031 1.22431 0.94382 0.90563 0.95044 0.93040 1.22831 0.97488 0.91642 1.02915 1.22450 0.87679 0.98762 0.93337 1.48395 1.30299 1.20132 1.35366 1.20253 0.86107 0.82459 0.78701 1.90668 1.59753 1.26757 1.65489 1.20740 0.93218 0.98109 0.96522 1.21651 1.01326 0.97401 0.97852 1.22024 0.97000 1.02874 0.98524 1.22102 1.02564 0.95312 1.00898 1.22736 0.97090 0.84697 0.99244 0.94732 0.93825 0.94401 0.88110 0.94058 0.93038 0.86265 0.89912 0.89408 0.91870 0.90752 0.92111 0.92140 0.92013 0.91199 0.91474 0.92340 0.92153 0.91517 0.90800 0.89961 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.82 37.16 0.36 -2.29 16 2 C -0.13 -2.81 5.33 -26.74 -0.14 -2.95 16 3 C 0.22 5.00 2.02 -68.87 -0.14 4.87 16 4 H 0.01 0.13 7.39 -51.93 -0.38 -0.25 16 5 C -0.49 -12.58 8.23 -34.44 -0.28 -12.86 16 6 H 0.06 1.64 7.48 -52.49 -0.39 1.25 16 7 C 0.06 1.46 5.28 -17.82 -0.09 1.37 16 8 N -0.90 -24.48 11.29 55.43 0.63 -23.86 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.67 -12.63 6.15 -99.05 -0.61 -13.24 16 14 C 0.09 1.44 3.24 -65.89 -0.21 1.23 16 15 H 0.05 0.91 7.46 -51.93 -0.39 0.53 16 16 C -0.11 -1.85 5.86 -24.46 -0.14 -1.99 16 17 C 0.10 1.52 6.94 -2.41 -0.02 1.50 16 18 N -0.61 -8.88 3.31 -170.38 -0.56 -9.44 16 19 C 0.54 8.03 6.50 -10.99 -0.07 7.95 16 20 O -0.55 -10.05 16.21 5.55 0.09 -9.96 16 21 C -0.08 -0.93 0.75 -155.66 -0.12 -1.05 16 22 C -0.12 -1.31 7.70 37.15 0.29 -1.02 16 23 C -0.15 -1.40 8.15 37.16 0.30 -1.10 16 24 C -0.15 -1.50 8.08 37.16 0.30 -1.20 16 25 C 0.09 1.14 4.76 -3.07 -0.01 1.13 16 26 H 0.03 0.53 6.43 -51.93 -0.33 0.20 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 2.53 5.92 -51.93 -0.31 2.23 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.32 5.34 6.18 -39.29 -0.24 5.10 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.16 7.99 -51.93 -0.42 0.74 16 37 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.07 0.64 5.06 -51.93 -0.26 0.38 16 41 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 42 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 43 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 45 H 0.07 0.73 4.63 -51.92 -0.24 0.49 16 46 H 0.08 1.06 5.40 -51.93 -0.28 0.77 16 47 H 0.07 0.80 5.52 -51.93 -0.29 0.51 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -28.54 353.80 -8.28 -36.82 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.15 Total: 4.97 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.02 Total: -6.42 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.55 Total: -46.54 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.54 -8.28 -36.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.527 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds