Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47234 * 2 1 4 4 O 1.21272 * 119.99967 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99712 * 180.02562 * 3 2 1 6 6 C 1.46495 * 119.99847 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.47368 * 324.99912 * 6 5 3 8 8 C 1.53005 * 109.47270 * 84.99930 * 6 5 3 9 9 C 1.53001 * 109.47141 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47003 * 299.99786 * 9 8 6 11 11 H 1.08999 * 109.47199 * 300.00378 * 10 9 8 12 12 N 1.46904 * 109.46718 * 180.02562 * 10 9 8 13 13 C 1.46890 * 110.99985 * 87.42135 * 12 10 9 14 14 H 1.09007 * 109.47473 * 30.64938 * 13 12 10 15 15 C 1.50704 * 109.47482 * 270.64334 * 13 12 10 16 16 H 1.07995 * 119.99238 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00005 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99742 * 179.97438 * 17 15 13 19 19 Si 1.86805 * 120.00363 * 0.02562 * 17 15 13 20 20 H 1.48488 * 109.47194 * 89.99620 * 19 17 15 21 21 H 1.48501 * 109.46937 * 209.99992 * 19 17 15 22 22 H 1.48501 * 109.46667 * 329.99248 * 19 17 15 23 23 C 1.53004 * 109.47076 * 150.64394 * 13 12 10 24 24 C 1.53000 * 109.46867 * 294.21505 * 23 13 12 25 25 C 1.52997 * 109.47099 * 60.00336 * 10 9 8 26 26 C 1.52997 * 109.47160 * 299.99971 * 25 10 9 27 27 H 1.08997 * 109.47655 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46926 * 300.00400 * 1 2 3 29 29 H 1.09005 * 109.47100 * 59.99687 * 1 2 3 30 30 H 1.09002 * 109.46666 * 240.00076 * 2 1 3 31 31 H 1.08995 * 109.47052 * 120.00225 * 2 1 3 32 32 H 0.96999 * 120.00014 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.46758 * 300.00346 * 8 6 5 34 34 H 1.08999 * 109.46940 * 59.99720 * 8 6 5 35 35 H 1.08997 * 109.46710 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.46997 * 59.99730 * 9 8 6 37 37 H 1.00899 * 110.99582 * 211.37347 * 12 10 9 38 38 H 0.96998 * 120.00205 * 180.02562 * 18 17 15 39 39 H 1.08990 * 109.46949 * 54.21550 * 23 13 12 40 40 H 1.09000 * 109.47161 * 174.21732 * 23 13 12 41 41 H 1.09004 * 109.46770 * 176.56357 * 24 23 13 42 42 H 1.08998 * 109.47395 * 296.55516 * 24 23 13 43 43 H 1.08991 * 109.47456 * 56.56289 * 24 23 13 44 44 H 1.08999 * 109.47516 * 59.99679 * 25 10 9 45 45 H 1.09001 * 109.47305 * 179.97438 * 25 10 9 46 46 H 1.09000 * 109.47580 * 180.02562 * 26 25 10 47 47 H 1.08999 * 109.47122 * 299.99948 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0482 0.0000 7 1 3.1730 3.6717 -0.5887 8 6 3.8980 3.5701 1.4374 9 6 4.4075 5.0128 1.4379 10 6 5.8097 5.0587 0.8274 11 1 6.4828 4.4354 1.4160 12 7 6.2991 6.4438 0.8285 13 6 6.9684 6.7647 2.0960 14 1 7.4297 5.8641 2.5015 15 6 5.9564 7.2966 3.0780 16 1 4.9197 7.3868 2.7893 17 6 6.3540 7.6670 4.3451 18 7 5.4710 8.1317 5.2018 19 14 8.1472 7.5103 4.8446 20 1 8.8632 8.7702 4.5209 21 1 8.2336 7.2529 6.3046 22 1 8.7701 6.3829 4.1055 23 6 8.0457 7.8230 1.8503 24 6 9.1479 7.2334 0.9681 25 6 5.7575 4.5368 -0.6099 26 6 5.2480 3.0942 -0.6105 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9877 0.9297 -0.0013 33 1 2.8990 3.5377 1.8721 34 1 4.5708 2.9465 2.0261 35 1 4.4451 5.3844 2.4618 36 1 3.7343 5.6360 0.8492 37 1 6.9109 6.6117 0.0439 38 1 5.7507 8.3926 6.0931 39 1 7.6019 8.6839 1.3506 40 1 8.4717 8.1359 2.8036 41 1 9.8844 8.0048 0.7427 42 1 9.6328 6.4107 1.4935 43 1 8.7120 6.8649 0.0396 44 1 5.0844 5.1600 -1.1986 45 1 6.7564 4.5699 -1.0450 46 1 5.2112 2.7222 -1.6343 47 1 5.9211 2.4709 -0.0218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = -59.753464 kcal Electronic energy + Delta-G solvation = -23186.020569 eV Core-core repulsion = 19981.595349 eV Total energy + Delta-G solvation = -3204.425220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.02986 -38.35183 -36.18922 -33.97652 -32.93053 -32.04547 -31.01752 -30.49616 -27.93950 -26.48426 -24.34731 -22.61602 -22.42290 -21.27408 -20.33463 -19.74661 -19.39730 -17.16626 -16.64739 -16.20612 -15.68847 -15.47293 -14.72518 -14.35447 -14.08534 -13.97296 -13.69668 -13.42677 -13.20361 -12.85422 -12.63912 -12.38723 -12.22973 -11.99239 -11.92345 -11.90314 -11.66910 -11.36563 -11.24679 -11.07061 -10.94155 -10.80472 -10.50729 -10.26480 -10.22757 -9.86988 -9.81705 -9.69005 -9.36175 -9.13770 -8.86733 -8.47408 -7.34599 -5.99915 -3.95897 2.63789 3.15520 3.26738 3.36740 3.39190 4.43176 4.59255 4.80610 4.82205 4.88503 4.90989 5.01669 5.26730 5.34334 5.38806 5.49767 5.55766 5.58201 5.69073 5.72332 5.74600 5.79885 5.81237 5.86657 5.96132 6.00478 6.03742 6.05663 6.17956 6.37086 6.42499 6.44889 6.55187 6.59887 6.65341 6.73321 6.78663 6.95052 7.16855 7.28149 7.48706 7.77228 8.04291 8.23614 8.32862 8.80853 9.13824 9.63367 11.13194 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003877 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.380027 B = 7220.844852 C = 7976.741105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.507 3.493 4 O -0.538 6.538 5 N -0.729 5.729 6 C 0.143 3.857 7 H 0.087 0.913 8 C -0.126 4.126 9 C -0.105 4.105 10 C 0.099 3.901 11 H 0.035 0.965 12 N -0.672 5.672 13 C 0.190 3.810 14 H 0.001 0.999 15 C -0.491 4.491 16 H 0.085 0.915 17 C 0.065 3.935 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.269 1.269 23 C -0.138 4.138 24 C -0.156 4.156 25 C -0.119 4.119 26 C -0.119 4.119 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.396 0.604 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.319 0.681 38 H 0.262 0.738 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 -16.283 -12.377 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.294 3.706 4 O -0.414 6.414 5 N -0.380 5.380 6 C 0.040 3.960 7 H 0.105 0.895 8 C -0.165 4.165 9 C -0.144 4.144 10 C -0.011 4.011 11 H 0.053 0.947 12 N -0.303 5.303 13 C 0.081 3.919 14 H 0.019 0.981 15 C -0.530 4.530 16 H 0.103 0.897 17 C -0.136 4.136 18 N -0.540 5.540 19 Si 0.711 3.289 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.194 1.194 23 C -0.176 4.176 24 C -0.213 4.213 25 C -0.158 4.158 26 C -0.157 4.157 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.230 0.770 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.440 -15.266 -11.998 19.470 hybrid contribution 2.305 -0.844 0.400 2.487 sum 0.865 -16.110 -11.598 19.869 Atomic orbital electron populations 1.21524 0.93107 1.01377 1.03489 1.21638 0.98692 0.94086 1.04070 1.20770 0.82321 0.91739 0.75801 1.90723 1.55234 1.46523 1.48943 1.46198 1.07004 1.09124 1.75658 1.21106 0.95145 0.81937 0.97854 0.89460 1.21931 1.01475 0.97983 0.95085 1.21573 0.95212 0.93536 1.04067 1.21440 0.96783 0.89417 0.93506 0.94700 1.60540 1.43391 1.21382 1.05032 1.19709 0.91564 0.92879 0.87716 0.98111 1.21102 0.96260 1.40891 0.94706 0.89684 1.24973 0.96728 0.95231 0.96635 1.69886 1.33632 1.44234 1.06253 0.86983 0.86700 0.78580 0.76658 1.20702 1.22611 1.19446 1.22170 0.95925 1.00882 0.98650 1.21910 0.99155 1.00400 0.99880 1.21727 1.00869 0.94952 0.98222 1.21724 0.95442 0.98126 1.00438 0.92267 0.91876 0.92019 0.89207 0.89059 0.77015 0.91802 0.92406 0.88895 0.91934 0.86257 0.92819 0.91370 0.92831 0.93632 0.93714 0.93203 0.91038 0.92217 0.91819 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 2 C -0.14 -1.14 6.42 -27.88 -0.18 -1.32 16 3 C 0.51 6.12 7.79 -10.98 -0.09 6.04 16 4 O -0.54 -9.01 15.64 5.56 0.09 -8.92 16 5 N -0.73 -7.68 5.08 -53.81 -0.27 -7.95 16 6 C 0.14 1.85 2.45 -67.93 -0.17 1.69 16 7 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 8 C -0.13 -1.95 5.49 -26.73 -0.15 -2.10 16 9 C -0.11 -1.95 5.14 -26.73 -0.14 -2.09 16 10 C 0.10 1.70 2.50 -67.71 -0.17 1.53 16 11 H 0.04 0.64 7.34 -51.93 -0.38 0.26 16 12 N -0.67 -13.21 6.16 -100.95 -0.62 -13.83 16 13 C 0.19 4.35 1.62 -68.87 -0.11 4.24 16 14 H 0.00 0.03 6.38 -51.93 -0.33 -0.30 16 15 C -0.49 -13.57 8.02 -34.44 -0.28 -13.85 16 16 H 0.09 2.60 7.26 -52.49 -0.38 2.22 16 17 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.86 24.42 -169.99 -4.15 17.71 16 20 H -0.28 -6.80 6.82 56.52 0.39 -6.41 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 23 C -0.14 -2.92 4.98 -26.73 -0.13 -3.06 16 24 C -0.16 -2.62 9.81 37.16 0.36 -2.25 16 25 C -0.12 -1.57 5.17 -26.73 -0.14 -1.71 16 26 C -0.12 -1.31 5.39 -26.73 -0.14 -1.46 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 2.90 8.60 -40.82 -0.35 2.55 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 2.09 6.22 -51.93 -0.32 1.77 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.32 5.52 6.05 -39.29 -0.24 5.28 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.22 3.22 -51.93 -0.17 1.06 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.74 6.41 -51.93 -0.33 0.41 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.36 354.54 -8.34 -40.70 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.42 Total: 7.20 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.08 Total: -13.40 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.12 Total: -48.63 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.36 -8.34 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.054 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds