Wall clock time and date at job start Tue Mar 31 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47058 * 2 1 4 4 O 1.21286 * 119.99663 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00489 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00488 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.47006 * 325.00116 * 6 5 3 8 8 C 1.53005 * 109.47201 * 85.00051 * 6 5 3 9 9 C 1.52999 * 109.47023 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47610 * 299.99832 * 9 8 6 11 11 H 1.08993 * 109.47211 * 300.00704 * 10 9 8 12 12 N 1.46896 * 109.47252 * 179.97438 * 10 9 8 13 13 C 1.46900 * 110.99834 * 85.63747 * 12 10 9 14 14 H 1.08998 * 109.47457 * 323.97413 * 13 12 10 15 15 C 1.50705 * 109.46927 * 83.97342 * 13 12 10 16 16 H 1.08001 * 119.99790 * 359.97438 * 15 13 12 17 17 C 1.37874 * 120.00179 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99953 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00183 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47593 * 119.99647 * 19 17 15 22 22 H 1.48502 * 109.47087 * 239.99909 * 19 17 15 23 23 C 1.52999 * 109.47316 * 203.96866 * 13 12 10 24 24 C 1.53004 * 109.46830 * 64.10691 * 23 13 12 25 25 C 1.53002 * 109.46586 * 60.00327 * 10 9 8 26 26 C 1.52998 * 109.47533 * 204.99943 * 6 5 3 27 27 H 1.09008 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47397 * 299.99724 * 1 2 3 29 29 H 1.08997 * 109.47247 * 60.00592 * 1 2 3 30 30 H 1.09001 * 109.47637 * 239.99953 * 2 1 3 31 31 H 1.09002 * 109.47526 * 119.99803 * 2 1 3 32 32 H 0.97003 * 119.99667 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47143 * 300.00536 * 8 6 5 34 34 H 1.08999 * 109.47087 * 60.00115 * 8 6 5 35 35 H 1.09001 * 109.46588 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46824 * 60.00777 * 9 8 6 37 37 H 1.00902 * 111.00084 * 209.59002 * 12 10 9 38 38 H 0.97002 * 119.99763 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47193 * 184.10848 * 23 13 12 40 40 H 1.09001 * 109.47167 * 304.10959 * 23 13 12 41 41 H 1.09003 * 109.46908 * 294.92413 * 24 23 13 42 42 H 1.08996 * 109.47280 * 54.92394 * 24 23 13 43 43 H 1.08998 * 109.47006 * 174.92575 * 24 23 13 44 44 H 1.08999 * 109.47435 * 60.00144 * 25 10 9 45 45 H 1.09001 * 109.47020 * 180.02562 * 25 10 9 46 46 H 1.09008 * 109.46659 * 59.99854 * 26 6 5 47 47 H 1.08999 * 109.47116 * 300.00106 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1732 3.6717 -0.5884 8 6 3.8966 3.5708 1.4383 9 6 4.4060 5.0135 1.4388 10 6 5.8086 5.0594 0.8295 11 1 6.4813 4.4364 1.4188 12 7 6.2974 6.4447 0.8294 13 6 6.9281 6.7804 2.1130 14 1 6.3914 6.2851 2.9221 15 6 8.3623 6.3176 2.1042 16 1 8.7647 5.8232 1.2325 17 6 9.1602 6.5245 3.2094 18 7 8.6699 7.1262 4.2711 19 14 10.9381 5.9515 3.1982 20 1 11.2428 5.3085 1.8948 21 1 11.8355 7.1179 3.3970 22 1 11.1493 4.9719 4.2942 23 6 6.8824 8.2953 2.3229 24 6 5.4260 8.7510 2.4342 25 6 5.7576 4.5371 -0.6077 26 6 5.2484 3.0938 -0.6080 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9877 0.9299 0.0005 33 1 2.8973 3.5385 1.8723 34 1 4.5690 2.9475 2.0278 35 1 4.4418 5.3857 2.4627 36 1 3.7331 5.6365 0.8495 37 1 6.9326 6.6040 0.0618 38 1 9.2314 7.2721 5.0485 39 1 7.4142 8.5513 3.2393 40 1 7.3554 8.7938 1.4769 41 1 4.9174 8.5769 1.4859 42 1 4.9279 8.1867 3.2225 43 1 5.3952 9.8140 2.6732 44 1 5.0848 5.1602 -1.1971 45 1 6.7569 4.5694 -1.0417 46 1 5.2120 2.7216 -1.6320 47 1 5.9207 2.4705 -0.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:46 Heat of formation + Delta-G solvation = -74.708288 kcal Electronic energy + Delta-G solvation = -23069.804368 eV Core-core repulsion = 19864.730658 eV Total energy + Delta-G solvation = -3205.073710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.05435 -38.25542 -35.82294 -33.90404 -32.96054 -31.85911 -30.75042 -30.49851 -27.82056 -25.78409 -24.30990 -22.81762 -22.46429 -21.09966 -20.36329 -19.42801 -19.22600 -17.17781 -16.55994 -16.24990 -15.72644 -15.01913 -14.74451 -14.25760 -14.07363 -13.80018 -13.56541 -13.19713 -13.04411 -12.76732 -12.68521 -12.16346 -12.02038 -11.95206 -11.83521 -11.42413 -11.33890 -11.23720 -11.21945 -11.01354 -10.85373 -10.71303 -10.66093 -10.24110 -10.10163 -9.85508 -9.79643 -9.53925 -9.39003 -9.00925 -8.95843 -8.36895 -7.21731 -5.99192 -4.12332 2.59429 3.13011 3.24286 3.33141 3.35525 4.38548 4.56695 4.81156 4.85120 4.87071 4.95799 5.09378 5.26072 5.31756 5.46263 5.51628 5.55415 5.61483 5.70573 5.74684 5.79145 5.81709 6.00006 6.11843 6.14381 6.21458 6.38358 6.43079 6.46993 6.53972 6.55684 6.59183 6.75444 6.80214 6.94839 7.17002 7.21578 7.45846 7.48611 7.62973 7.79165 8.11670 8.18989 8.19391 8.37050 8.70805 9.01866 9.55349 11.00523 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.003618 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.405599 B = 7737.855370 C = 8274.978580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.508 3.492 4 O -0.541 6.541 5 N -0.728 5.728 6 C 0.145 3.855 7 H 0.087 0.913 8 C -0.125 4.125 9 C -0.100 4.100 10 C 0.092 3.908 11 H 0.047 0.953 12 N -0.686 5.686 13 C 0.216 3.784 14 H 0.033 0.967 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.327 0.673 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -12.892 -8.471 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.294 3.706 4 O -0.418 6.418 5 N -0.379 5.379 6 C 0.041 3.959 7 H 0.105 0.895 8 C -0.164 4.164 9 C -0.139 4.139 10 C -0.018 4.018 11 H 0.065 0.935 12 N -0.315 5.315 13 C 0.108 3.892 14 H 0.051 0.949 15 C -0.583 4.583 16 H 0.071 0.929 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.145 4.145 24 C -0.193 4.193 25 C -0.153 4.153 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.060 -11.880 -8.107 18.143 hybrid contribution 2.368 -1.202 0.122 2.658 sum -8.692 -13.082 -7.985 17.619 Atomic orbital electron populations 1.21520 0.93120 1.01396 1.03417 1.21643 0.98663 0.94082 1.04156 1.20775 0.82319 0.91739 0.75720 1.90711 1.55276 1.46563 1.49215 1.46212 1.07011 1.09212 1.75462 1.21068 0.95421 0.81900 0.97465 0.89538 1.21897 1.01190 0.97707 0.95648 1.21450 0.96618 0.94085 1.01713 1.21330 0.95304 0.91298 0.93882 0.93453 1.60910 1.43403 1.19957 1.07271 1.19172 0.91485 0.92490 0.86090 0.94920 1.21918 0.97504 1.38365 1.00468 0.92929 1.24936 0.98156 0.94929 0.95550 1.69893 1.35950 1.41976 1.04458 0.86631 0.85510 0.78498 0.77876 1.19979 1.20979 1.21100 1.21497 0.93676 0.97463 1.01876 1.21683 0.99509 0.97757 1.00301 1.21667 1.01041 0.94381 0.98244 1.21767 0.95124 0.98609 1.00424 0.92246 0.91941 0.92028 0.89134 0.89031 0.76869 0.92013 0.92101 0.91679 0.91923 0.85660 0.92979 0.89300 0.95200 0.93422 0.94502 0.95790 0.91489 0.91820 0.91877 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.15 -1.10 6.42 -27.88 -0.18 -1.28 16 3 C 0.51 5.91 7.79 -10.99 -0.09 5.83 16 4 O -0.54 -8.68 15.65 5.55 0.09 -8.59 16 5 N -0.73 -7.55 5.08 -53.81 -0.27 -7.82 16 6 C 0.15 1.84 2.45 -67.93 -0.17 1.68 16 7 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 8 C -0.13 -1.82 5.49 -26.73 -0.15 -1.97 16 9 C -0.10 -1.69 5.42 -26.73 -0.14 -1.83 16 10 C 0.09 1.64 2.30 -67.71 -0.16 1.48 16 11 H 0.05 0.96 7.59 -51.93 -0.39 0.57 16 12 N -0.69 -13.93 5.56 -100.96 -0.56 -14.49 16 13 C 0.22 5.22 1.80 -68.86 -0.12 5.10 16 14 H 0.03 0.89 7.16 -51.93 -0.37 0.51 16 15 C -0.54 -14.36 8.22 -34.44 -0.28 -14.64 16 16 H 0.05 1.38 7.76 -52.49 -0.41 0.98 16 17 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 18 N -0.88 -24.83 11.30 55.43 0.63 -24.21 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16 24 C -0.14 -2.82 9.73 37.16 0.36 -2.45 16 25 C -0.11 -1.63 5.19 -26.70 -0.14 -1.77 16 26 C -0.12 -1.42 5.39 -26.70 -0.14 -1.56 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.23 7.46 -51.93 -0.39 0.84 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.33 6.57 8.05 -39.29 -0.32 6.25 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 39 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 46 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -29.78 366.97 -9.53 -39.31 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.81 Total: 7.60 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.10 Total: -13.19 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.21 Total: -46.52 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.78 -9.53 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.401 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds