Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47012 * 2 1 4 4 C 1.42899 * 113.99950 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.40053 * 332.25941 * 4 3 2 6 6 C 1.55054 * 110.35415 * 210.00084 * 4 3 2 7 7 C 1.53138 * 104.09003 * 243.94086 * 6 4 3 8 8 H 1.08999 * 110.25859 * 90.26128 * 7 6 4 9 9 C 1.52157 * 114.44155 * 215.18546 * 7 6 4 10 10 N 1.47586 * 107.42036 * 176.89159 * 9 7 6 11 11 C 1.46903 * 110.99994 * 177.39824 * 10 9 7 12 12 H 1.08998 * 109.46809 * 300.00070 * 11 10 9 13 13 C 1.50694 * 109.47066 * 59.99969 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 C 1.53000 * 109.47120 * 179.97438 * 11 10 9 22 22 C 1.52999 * 109.47009 * 65.00009 * 21 11 10 23 23 C 1.46595 * 112.69476 * 302.61013 * 10 9 7 24 24 C 1.53697 * 111.03515 * 54.66338 * 23 10 9 25 25 N 1.45633 * 107.51509 * 303.78286 * 24 23 10 26 26 C 1.46941 * 117.16920 * 180.54748 * 25 24 23 27 27 H 1.08993 * 109.47072 * 60.00020 * 1 2 3 28 28 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47206 * 299.99676 * 1 2 3 30 30 H 1.08994 * 109.47138 * 240.00156 * 2 1 3 31 31 H 1.09001 * 109.47117 * 120.00310 * 2 1 3 32 32 H 1.08995 * 110.51016 * 125.28831 * 6 4 3 33 33 H 1.09003 * 110.62151 * 2.64918 * 6 4 3 34 34 H 1.09006 * 109.86495 * 57.41338 * 9 7 6 35 35 H 1.08997 * 109.86778 * 296.37303 * 9 7 6 36 36 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47078 * 185.00105 * 21 11 10 38 38 H 1.08999 * 109.47034 * 304.99954 * 21 11 10 39 39 H 1.09001 * 109.47279 * 299.99973 * 22 21 11 40 40 H 1.08999 * 109.47267 * 60.00088 * 22 21 11 41 41 H 1.09002 * 109.46877 * 180.02562 * 22 21 11 42 42 H 1.09002 * 109.16691 * 175.06881 * 23 10 9 43 43 H 1.09001 * 109.16271 * 294.26352 * 23 10 9 44 44 H 1.08996 * 109.84876 * 184.27312 * 24 23 10 45 45 H 1.09001 * 109.90171 * 63.31247 * 24 23 10 46 46 H 1.09005 * 110.63905 * 79.00348 * 26 25 24 47 47 H 1.09000 * 110.63364 * 315.95410 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8808 0.5888 0.4765 6 6 3.8688 2.7579 0.7275 7 6 4.5473 3.5872 -0.3666 8 1 3.8173 4.2267 -0.8629 9 6 5.7309 4.4142 0.1131 10 7 6.3087 5.0851 -1.0677 11 6 7.4259 5.9581 -0.6831 12 1 7.0699 6.7187 0.0118 13 6 8.5008 5.1358 -0.0203 14 1 8.3677 4.0711 0.1025 15 6 9.6548 5.7425 0.4283 16 7 9.8171 7.0390 0.2783 17 14 10.9840 4.7244 1.2568 18 1 10.5585 3.3026 1.3081 19 1 12.2466 4.8352 0.4831 20 1 11.2035 5.2262 2.6370 21 6 7.9979 6.6340 -1.9308 22 6 6.9451 7.5659 -2.5340 23 6 6.7157 4.1404 -2.1122 24 6 5.5484 3.2246 -2.5131 25 7 5.0774 2.5607 -1.3054 26 6 3.9607 1.6168 -1.4506 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.5745 2.5288 1.5259 33 1 3.0022 3.2863 1.1251 34 1 6.4761 3.7636 0.5711 35 1 5.3945 5.1588 0.8345 36 1 10.6292 7.4658 0.5937 37 1 8.8812 7.2116 -1.6584 38 1 8.2722 5.8739 -2.6623 39 1 6.0618 6.9882 -2.8064 40 1 6.6708 8.3260 -1.8025 41 1 7.3525 8.0471 -3.4232 42 1 7.0507 4.6971 -2.9874 43 1 7.5388 3.5296 -1.7412 44 1 5.8910 2.4823 -3.2339 45 1 4.7435 3.8178 -2.9471 46 1 4.3139 0.6602 -1.8359 47 1 3.1888 2.0318 -2.0987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = -33.261070 kcal Electronic energy + Delta-G solvation = -23774.810543 eV Core-core repulsion = 20571.534119 eV Total energy + Delta-G solvation = -3203.276423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87662 -37.92754 -36.16100 -33.05306 -32.06058 -31.42471 -30.92294 -28.52905 -27.63361 -26.10291 -23.65784 -23.03047 -22.37719 -21.95062 -20.83308 -19.47825 -18.77878 -16.94900 -16.25474 -15.80929 -15.63254 -15.19098 -14.55453 -14.39146 -14.14378 -13.79330 -13.67084 -13.14763 -13.06205 -12.74955 -12.60495 -12.27768 -12.17671 -11.95005 -11.63253 -11.39817 -11.31146 -11.28011 -11.03204 -10.84267 -10.68690 -10.58562 -10.51905 -10.36417 -10.20609 -9.72928 -9.63310 -9.58832 -9.29325 -9.03948 -8.32427 -8.12376 -7.02800 -5.94324 -4.07536 3.28303 3.37076 3.41464 3.50916 4.37944 4.43498 4.62632 4.77475 4.86908 5.02506 5.04520 5.14395 5.18611 5.29323 5.41985 5.51025 5.59688 5.66085 5.70884 5.73675 5.81470 5.88280 5.94876 6.02513 6.06715 6.15773 6.29929 6.30968 6.40498 6.47106 6.64403 6.71427 6.82861 6.92207 7.05444 7.11549 7.21638 7.29651 7.36332 7.50324 7.68232 7.79867 8.02366 8.20484 8.39321 8.51630 9.03244 9.59827 11.04162 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.004290 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.355550 B = 6524.516226 C = 7177.748261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.087 3.913 5 H 0.071 0.929 6 C -0.112 4.112 7 C 0.066 3.934 8 H 0.055 0.945 9 C 0.082 3.918 10 N -0.544 5.544 11 C 0.217 3.783 12 H 0.039 0.961 13 C -0.538 4.538 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.886 3.114 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.116 4.116 22 C -0.138 4.138 23 C 0.067 3.933 24 C 0.059 3.941 25 N -0.523 5.523 26 C 0.025 3.975 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -10.773 -2.335 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.300 6.300 4 C 0.029 3.971 5 H 0.089 0.911 6 C -0.150 4.150 7 C -0.042 4.042 8 H 0.073 0.927 9 C -0.047 4.047 10 N -0.268 5.268 11 C 0.111 3.889 12 H 0.057 0.943 13 C -0.578 4.578 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.714 3.286 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.154 4.154 22 C -0.196 4.196 23 C -0.061 4.061 24 C -0.070 4.070 25 N -0.249 5.249 26 C -0.104 4.104 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.539 -10.452 -2.339 17.263 hybrid contribution 1.001 -0.907 0.340 1.393 sum -12.538 -11.359 -2.000 17.036 Atomic orbital electron populations 1.21742 0.93967 1.02019 1.03092 1.22483 0.95413 0.84245 0.99933 1.87952 1.21172 1.26024 1.94881 1.23162 0.80083 0.98864 0.94977 0.91125 1.22244 1.00211 0.94610 0.97944 1.22495 0.96280 0.92356 0.93066 0.92685 1.21742 0.93939 0.95850 0.93170 1.62116 1.34762 1.20437 1.09500 1.19234 0.85859 0.90956 0.92853 0.94335 1.21806 1.02755 0.94922 1.38281 0.92352 1.24910 0.98091 0.94777 0.95712 1.69886 1.27040 1.08897 1.46741 0.86639 0.82043 0.80649 0.79283 1.19896 1.21117 1.21085 1.21683 0.99358 0.97768 0.96589 1.21717 0.99826 0.99407 0.98610 1.21941 0.94748 0.93304 0.96157 1.22178 0.97883 0.95885 0.91015 1.63927 1.32622 1.14478 1.13826 1.23246 0.92888 0.97478 0.96803 0.91940 0.91317 0.91876 0.93559 0.93449 0.89990 0.90174 0.93058 0.91518 0.93039 0.88898 0.94740 0.93557 0.94117 0.95618 0.90896 0.93729 0.91403 0.94838 0.90723 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.53 6.50 37.16 0.24 0.78 16 3 O -0.38 -4.84 9.99 -35.23 -0.35 -5.19 16 4 C 0.09 1.13 3.58 -24.43 -0.09 1.04 16 5 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 6 C -0.11 -1.57 6.46 -25.57 -0.17 -1.74 16 7 C 0.07 1.10 2.60 -66.98 -0.17 0.92 16 8 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 9 C 0.08 1.60 4.86 -3.88 -0.02 1.58 16 10 N -0.54 -11.45 4.10 -227.79 -0.93 -12.39 16 11 C 0.22 5.30 1.83 -68.87 -0.13 5.17 16 12 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.54 -14.31 7.09 -34.44 -0.24 -14.55 16 14 H 0.06 1.59 5.98 -52.49 -0.31 1.28 16 15 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 16 N -0.89 -24.84 11.29 55.43 0.63 -24.21 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.12 -2.71 4.85 -26.73 -0.13 -2.84 16 22 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 23 C 0.07 1.32 4.89 -3.63 -0.02 1.30 16 24 C 0.06 0.97 6.04 -4.15 -0.03 0.95 16 25 N -0.52 -8.51 4.85 -224.56 -1.09 -9.60 16 26 C 0.02 0.34 6.47 -2.59 -0.02 0.32 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 33 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 34 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 38 H 0.03 0.79 6.03 -51.93 -0.31 0.48 16 39 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.42 6.06 -51.93 -0.31 1.11 16 43 H 0.04 0.98 6.82 -51.93 -0.35 0.63 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -27.82 352.68 -10.19 -38.01 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.63 Total: 0.49 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.11 Total: -8.60 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -1.40 Total: -46.20 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.35 Total: -5.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.82 -10.19 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.749 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds