Wall clock time and date at job start Tue Mar 31 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47264 * 2 1 4 4 C 1.42907 * 114.00005 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.39709 * 329.19764 * 4 3 2 6 6 C 1.55067 * 110.34890 * 206.94496 * 4 3 2 7 7 C 1.53150 * 104.08903 * 243.92898 * 6 4 3 8 8 H 1.08998 * 110.24914 * 89.64180 * 7 6 4 9 9 C 1.52153 * 114.43050 * 215.20843 * 7 6 4 10 10 N 1.47588 * 107.41704 * 176.87824 * 9 7 6 11 11 C 1.46901 * 111.00192 * 177.40161 * 10 9 7 12 12 H 1.08997 * 109.47286 * 62.67307 * 11 10 9 13 13 C 1.50704 * 109.46459 * 302.67913 * 11 10 9 14 14 H 1.08000 * 120.00518 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99634 * 180.27218 * 13 11 10 16 16 N 1.31517 * 120.00171 * 359.72927 * 15 13 11 17 17 Si 1.86799 * 119.99806 * 179.72519 * 15 13 11 18 18 H 1.48496 * 109.46999 * 60.00542 * 17 15 13 19 19 H 1.48502 * 109.47130 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47253 * 300.00405 * 17 15 13 21 21 C 1.52995 * 109.47285 * 182.68357 * 11 10 9 22 22 C 1.52995 * 109.47396 * 59.23103 * 21 11 10 23 23 C 1.46599 * 112.70103 * 302.61635 * 10 9 7 24 24 C 1.53697 * 111.03039 * 54.65909 * 23 10 9 25 25 N 1.45627 * 107.50894 * 303.77688 * 24 23 10 26 26 C 1.46946 * 117.17246 * 180.57062 * 25 24 23 27 27 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47040 * 300.00062 * 1 2 3 29 29 H 1.09002 * 109.47091 * 60.00005 * 1 2 3 30 30 H 1.09002 * 109.47040 * 239.99938 * 2 1 3 31 31 H 1.09000 * 109.47019 * 120.00536 * 2 1 3 32 32 H 1.08995 * 110.51302 * 2.58344 * 6 4 3 33 33 H 1.09008 * 110.50617 * 125.14472 * 6 4 3 34 34 H 1.09005 * 109.86695 * 57.40293 * 9 7 6 35 35 H 1.08997 * 109.87317 * 296.35965 * 9 7 6 36 36 H 0.96999 * 119.99980 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47193 * 179.22945 * 21 11 10 38 38 H 1.08999 * 109.46899 * 299.22524 * 21 11 10 39 39 H 1.08998 * 109.47379 * 65.17840 * 22 21 11 40 40 H 1.09002 * 109.47344 * 185.18350 * 22 21 11 41 41 H 1.09002 * 109.47183 * 305.17887 * 22 21 11 42 42 H 1.08996 * 109.16088 * 175.06199 * 23 10 9 43 43 H 1.09004 * 109.16465 * 294.25979 * 23 10 9 44 44 H 1.08999 * 109.84887 * 63.28241 * 24 23 10 45 45 H 1.09006 * 109.84708 * 184.27411 * 24 23 10 46 46 H 1.08997 * 110.63363 * 315.95460 * 26 25 24 47 47 H 1.08997 * 110.63312 * 78.83966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8791 0.6151 0.5223 6 6 3.8664 2.7945 0.6582 7 6 4.5490 3.5648 -0.4758 8 1 3.8188 4.1686 -1.0146 9 6 5.7314 4.4156 -0.0361 10 7 6.3137 5.0229 -1.2486 11 6 7.4300 5.9146 -0.9067 12 1 8.2256 5.3368 -0.4364 13 6 6.9496 6.9774 0.0477 14 1 5.9184 6.9890 0.3684 15 6 7.8254 7.9380 0.5074 16 7 9.0813 7.9236 0.1172 17 14 7.2282 9.2599 1.6843 18 1 6.7116 8.6235 2.9225 19 1 8.3551 10.1649 2.0254 20 1 6.1430 10.0426 1.0402 21 6 7.9632 6.5754 -2.1794 22 6 6.8413 7.3709 -2.8496 23 6 6.7239 4.0244 -2.2405 24 6 5.5574 3.0891 -2.5965 25 7 5.0821 2.4901 -1.3572 26 6 3.9657 1.5397 -1.4562 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.9973 3.3420 1.0227 33 1 4.5675 2.6078 1.4718 34 1 6.4745 3.7898 0.4582 35 1 5.3928 5.1973 0.6438 36 1 9.6973 8.5996 0.4403 37 1 8.7825 7.2473 -1.9240 38 1 8.3232 5.8074 -2.8640 39 1 6.5442 8.1960 -2.2024 40 1 7.1946 7.7654 -3.8023 41 1 5.9856 6.7179 -3.0217 42 1 7.0622 4.5341 -3.1426 43 1 7.5453 3.4336 -1.8349 44 1 4.7547 3.6598 -3.0635 45 1 5.9021 2.3096 -3.2761 46 1 3.1961 1.9198 -2.1279 47 1 4.3197 0.5650 -1.7918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:25 Heat of formation + Delta-G solvation = -30.805045 kcal Electronic energy + Delta-G solvation = -23740.370780 eV Core-core repulsion = 20537.200857 eV Total energy + Delta-G solvation = -3203.169922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.91458 -37.93462 -36.15571 -33.25112 -32.09107 -31.33983 -30.80015 -28.42580 -27.82511 -25.90977 -24.00034 -23.03966 -22.30724 -22.00824 -20.85390 -19.48012 -18.74744 -16.93292 -16.08026 -15.85203 -15.71091 -15.25357 -14.50974 -14.42587 -14.21046 -13.83895 -13.51211 -13.37759 -13.09936 -12.80328 -12.61801 -12.26279 -12.10794 -11.97653 -11.74348 -11.64828 -11.31283 -11.14458 -10.90500 -10.84048 -10.76408 -10.57817 -10.49155 -10.37749 -10.03656 -9.83316 -9.69172 -9.53208 -9.32001 -8.74746 -8.36165 -8.19087 -7.03913 -5.96638 -4.00103 3.34388 3.38976 3.41808 3.49108 4.32406 4.43331 4.59927 4.74398 4.85404 4.97035 5.02530 5.10190 5.16830 5.35047 5.40623 5.47998 5.50992 5.62896 5.66580 5.70563 5.78149 5.83834 5.87650 5.98033 6.03750 6.12771 6.22093 6.28760 6.46918 6.54471 6.61171 6.69218 6.79084 6.83590 7.00942 7.15919 7.24951 7.37159 7.43396 7.48155 7.69892 7.80546 7.87610 8.23767 8.38925 8.66807 9.04987 9.63737 11.09747 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.004228 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.376819 B = 6621.140795 C = 7426.966747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.088 3.912 5 H 0.070 0.930 6 C -0.111 4.111 7 C 0.066 3.934 8 H 0.059 0.941 9 C 0.085 3.915 10 N -0.540 5.540 11 C 0.221 3.779 12 H -0.003 1.003 13 C -0.497 4.497 14 H 0.061 0.939 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.112 4.112 22 C -0.120 4.120 23 C 0.063 3.937 24 C 0.061 3.939 25 N -0.527 5.527 26 C 0.024 3.976 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.260 0.740 37 H 0.091 0.909 38 H 0.013 0.987 39 H 0.054 0.946 40 H 0.014 0.986 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 -14.008 -2.154 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.300 6.300 4 C 0.029 3.971 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.042 4.042 8 H 0.077 0.923 9 C -0.043 4.043 10 N -0.265 5.265 11 C 0.116 3.884 12 H 0.014 0.986 13 C -0.535 4.535 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.150 4.150 22 C -0.178 4.178 23 C -0.066 4.066 24 C -0.068 4.068 25 N -0.253 5.253 26 C -0.105 4.105 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.071 -13.734 -2.173 17.774 hybrid contribution -0.073 0.339 0.457 0.574 sum -11.144 -13.395 -1.715 17.509 Atomic orbital electron populations 1.21743 0.93945 1.02023 1.03136 1.22474 0.95442 0.84242 0.99905 1.87964 1.21106 1.26025 1.94870 1.23156 0.80154 0.98783 0.94958 0.91177 1.22230 1.00320 0.94366 0.97990 1.22539 0.96418 0.91880 0.93358 0.92344 1.21804 0.93716 0.95826 0.92962 1.61700 1.35540 1.18065 1.11204 1.19194 0.86326 0.89981 0.92923 0.98560 1.21043 0.96130 1.10998 1.25349 0.92052 1.24894 0.94866 0.97743 0.96577 1.69869 1.03493 1.35312 1.44569 0.86649 0.78156 0.81732 0.81402 1.20369 1.21469 1.20283 1.21584 0.99328 0.98624 0.95503 1.21458 0.98887 1.00328 0.97093 1.22039 0.94618 0.92528 0.97444 1.22111 0.97781 0.96276 0.90612 1.63938 1.32787 1.13523 1.15042 1.23259 0.92903 0.97378 0.96966 0.91311 0.91854 0.91920 0.93573 0.93462 0.90016 0.89997 0.95059 0.89428 0.93010 0.89040 0.96823 0.92691 0.96720 0.93617 0.90596 0.95638 0.94398 0.91307 0.93491 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.53 6.52 37.16 0.24 0.77 16 3 O -0.38 -4.81 9.98 -35.23 -0.35 -5.16 16 4 C 0.09 1.11 3.56 -24.43 -0.09 1.02 16 5 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 6 C -0.11 -1.55 6.46 -25.56 -0.17 -1.72 16 7 C 0.07 1.10 2.61 -66.98 -0.17 0.92 16 8 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 9 C 0.09 1.68 4.93 -3.88 -0.02 1.66 16 10 N -0.54 -11.47 3.61 -227.79 -0.82 -12.29 16 11 C 0.22 5.48 1.80 -68.86 -0.12 5.36 16 12 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 13 C -0.50 -13.19 6.78 -34.44 -0.23 -13.42 16 14 H 0.06 1.63 6.50 -52.49 -0.34 1.29 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.16 11.31 55.43 0.63 -24.54 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.11 -2.67 4.99 -26.74 -0.13 -2.80 16 22 C -0.12 -2.66 9.47 37.15 0.35 -2.30 16 23 C 0.06 1.17 5.16 -3.63 -0.02 1.15 16 24 C 0.06 0.96 6.04 -4.15 -0.03 0.94 16 25 N -0.53 -8.27 4.85 -224.56 -1.09 -9.36 16 26 C 0.02 0.31 6.47 -2.59 -0.02 0.30 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 33 H 0.08 1.11 8.02 -51.92 -0.42 0.70 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.84 6.29 -51.93 -0.33 1.51 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 38 H 0.01 0.29 6.39 -51.93 -0.33 -0.04 16 39 H 0.05 1.31 7.43 -51.93 -0.39 0.93 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.04 0.97 7.42 -51.93 -0.39 0.59 16 42 H 0.08 1.41 6.20 -51.93 -0.32 1.09 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -28.03 353.08 -10.13 -38.16 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.68 Total: -0.87 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.12 Total: -7.40 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.28 Total: -46.19 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.35 Total: -5.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.03 -10.13 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.360 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds