Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47246 * 2 1 4 4 H 1.09004 * 109.47099 * 305.29011 * 3 2 1 5 5 C 1.50704 * 109.47140 * 185.29125 * 3 2 1 6 6 H 1.07997 * 120.00011 * 274.71358 * 5 3 2 7 7 C 1.37877 * 119.99897 * 94.70788 * 5 3 2 8 8 N 1.31513 * 120.00257 * 184.81680 * 7 5 3 9 9 Si 1.86804 * 120.00053 * 4.81935 * 7 5 3 10 10 H 1.48500 * 109.46910 * 84.88144 * 9 7 5 11 11 H 1.48497 * 109.47194 * 204.87471 * 9 7 5 12 12 H 1.48496 * 109.47121 * 324.87831 * 9 7 5 13 13 N 1.46899 * 109.47377 * 65.29207 * 3 2 1 14 14 C 1.48803 * 111.00202 * 180.02562 * 13 3 2 15 15 C 1.54645 * 102.63875 * 199.45206 * 14 13 3 16 16 H 1.09002 * 108.16608 * 282.99854 * 15 14 13 17 17 C 1.52143 * 110.29140 * 165.24347 * 15 14 13 18 18 N 1.45289 * 113.50762 * 194.43669 * 17 15 14 19 19 C 1.46896 * 111.00049 * 212.81615 * 18 17 15 20 20 C 1.52998 * 109.47024 * 170.00194 * 19 18 17 21 21 C 1.48784 * 111.83678 * 88.24806 * 18 17 15 22 22 C 1.46799 * 111.20982 * 285.57851 * 21 18 17 23 23 O 1.42550 * 112.71331 * 62.52633 * 22 21 18 24 24 C 1.41027 * 114.89006 * 271.59703 * 23 22 21 25 25 H 1.08997 * 110.74498 * 324.23157 * 24 23 22 26 26 C 1.48058 * 110.99832 * 63.00922 * 13 3 2 27 27 H 1.08999 * 109.47015 * 300.00036 * 1 2 3 28 28 H 1.08995 * 109.47434 * 60.00118 * 1 2 3 29 29 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46991 * 239.99966 * 2 1 3 31 31 H 1.09003 * 109.47258 * 120.00170 * 2 1 3 32 32 H 0.96993 * 120.00815 * 180.02562 * 8 7 5 33 33 H 1.08993 * 110.77604 * 81.16183 * 14 13 3 34 34 H 1.08999 * 110.93496 * 317.81078 * 14 13 3 35 35 H 1.09005 * 108.67527 * 315.47583 * 17 15 14 36 36 H 1.08999 * 108.67954 * 73.39250 * 17 15 14 37 37 H 1.08994 * 109.47331 * 289.99860 * 19 18 17 38 38 H 1.09001 * 109.47106 * 50.00165 * 19 18 17 39 39 H 1.09004 * 109.47304 * 300.00147 * 20 19 18 40 40 H 1.08999 * 109.47714 * 60.00122 * 20 19 18 41 41 H 1.09002 * 109.47303 * 180.02562 * 20 19 18 42 42 H 1.09005 * 109.13135 * 46.02525 * 21 18 17 43 43 H 1.09004 * 109.13189 * 165.13099 * 21 18 17 44 44 H 1.09001 * 108.83605 * 301.69168 * 22 21 18 45 45 H 1.09005 * 108.83276 * 183.35933 * 22 21 18 46 46 H 1.09004 * 110.01022 * 27.93881 * 26 13 3 47 47 H 1.09003 * 110.01227 * 266.56758 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6013 1.9829 -0.8389 5 6 3.5413 1.4445 -0.1310 6 1 4.1602 1.3397 0.7478 7 6 4.1247 1.5799 -1.3729 8 7 5.4304 1.4868 -1.4998 9 14 3.0606 1.8957 -2.8754 10 1 2.7944 3.3516 -2.9963 11 1 3.7671 1.4191 -4.0914 12 1 1.7743 1.1675 -2.7328 13 7 1.6574 2.0972 1.2582 14 6 2.1371 3.5053 1.2940 15 6 2.1037 3.8358 2.8043 16 1 1.0678 4.0199 3.0891 17 6 2.8973 5.1033 3.0847 18 7 3.1952 5.3009 4.4929 19 6 3.2218 6.7304 4.8299 20 6 3.2885 6.8951 6.3495 21 6 4.4662 4.6361 4.8883 22 6 4.2982 3.1807 4.9799 23 8 3.9472 2.5875 3.7321 24 6 2.5627 2.5328 3.4694 25 1 2.0028 2.3480 4.3862 26 6 2.2946 1.4321 2.4174 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 5.8410 1.5825 -2.3733 33 1 1.4622 4.1578 0.7403 34 1 3.1522 3.5810 0.9040 35 1 3.8360 5.0567 2.5325 36 1 2.3263 5.9594 2.7252 37 1 4.0970 7.1946 4.3754 38 1 2.3187 7.2097 4.4518 39 1 2.4132 6.4308 6.8040 40 1 4.1915 6.4158 6.7277 41 1 3.3077 7.9558 6.5996 42 1 5.2328 4.8613 4.1468 43 1 4.7841 5.0208 5.8574 44 1 3.5154 2.9618 5.7061 45 1 5.2322 2.7399 5.3287 46 1 3.2341 0.9709 2.1128 47 1 1.6245 0.6775 2.8293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -27.721070 kcal Electronic energy + Delta-G solvation = -24413.497740 eV Core-core repulsion = 21210.461549 eV Total energy + Delta-G solvation = -3203.036191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88094 -37.63332 -36.29640 -34.05501 -32.02250 -31.44024 -30.68389 -28.31275 -28.16878 -26.30785 -24.16686 -22.95119 -22.55564 -21.39050 -20.51797 -19.55001 -18.52232 -17.16331 -16.55416 -15.99273 -15.92200 -15.31446 -14.58713 -14.48490 -14.11200 -13.55245 -13.40065 -13.14126 -12.84145 -12.74975 -12.69738 -12.22875 -12.18226 -12.02387 -11.82882 -11.57512 -11.28495 -11.22733 -10.95174 -10.85530 -10.78291 -10.66064 -10.44482 -10.37862 -9.92497 -9.88903 -9.72277 -9.50935 -9.24130 -9.01564 -8.52693 -8.23537 -7.18850 -6.07361 -4.07610 3.27951 3.36915 3.40089 3.80941 4.14494 4.41559 4.85406 5.02165 5.10444 5.12540 5.24551 5.26405 5.31327 5.37033 5.43550 5.46324 5.56443 5.69108 5.79779 5.82088 5.86197 5.93411 6.02089 6.06141 6.08504 6.13187 6.16102 6.28344 6.32480 6.40182 6.57742 6.60390 6.66948 6.78274 6.82357 6.99326 7.02515 7.11682 7.20515 7.25177 7.26845 7.62335 7.82304 8.01003 8.20849 8.50431 9.01077 9.56434 11.05108 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005287 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.533316 B = 5294.300387 C = 5653.412414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.168 3.832 4 H 0.041 0.959 5 C -0.540 4.540 6 H 0.083 0.917 7 C 0.077 3.923 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.507 5.507 14 C 0.046 3.954 15 C -0.108 4.108 16 H 0.068 0.932 17 C 0.077 3.923 18 N -0.544 5.544 19 C 0.054 3.946 20 C -0.149 4.149 21 C 0.024 3.976 22 C 0.067 3.933 23 O -0.365 6.365 24 C 0.104 3.896 25 H 0.059 0.941 26 C 0.037 3.963 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 7.261 12.888 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C 0.060 3.940 4 H 0.059 0.941 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.231 5.231 14 C -0.083 4.083 15 C -0.129 4.129 16 H 0.086 0.914 17 C -0.051 4.051 18 N -0.270 5.270 19 C -0.074 4.074 20 C -0.206 4.206 21 C -0.103 4.103 22 C -0.010 4.010 23 O -0.283 6.283 24 C 0.045 3.955 25 H 0.077 0.923 26 C -0.091 4.091 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.064 6.945 12.895 15.852 hybrid contribution 0.943 0.778 -1.362 1.830 sum -5.121 7.723 11.533 14.794 Atomic orbital electron populations 1.21769 0.97905 0.99167 1.01342 1.21709 0.93306 0.98867 1.00793 1.19849 0.94679 0.91046 0.88416 0.94137 1.21608 0.90508 1.50581 0.95107 0.89879 1.25018 0.94625 0.94330 0.98590 1.69930 1.09595 1.49649 1.24106 0.86976 0.81357 0.79062 0.82896 1.20286 1.21636 1.18658 1.65408 1.52694 1.01554 1.03457 1.23099 1.00818 0.90994 0.93353 1.22056 0.99632 0.93983 0.97181 0.91394 1.21387 0.99621 0.97232 0.86901 1.61536 1.33478 1.11968 1.19978 1.22069 1.00630 0.88264 0.96441 1.21835 1.02330 1.00997 0.95454 1.22008 0.90715 0.96380 1.01168 1.21235 1.00713 0.92110 0.86966 1.87614 1.23850 1.79745 1.37097 1.22514 0.81440 0.94508 0.97022 0.92309 1.23021 0.99954 0.95386 0.90772 0.92312 0.94162 0.94909 0.92959 0.93021 0.92780 0.92054 0.91160 0.93918 0.91769 0.95138 0.90880 0.91911 0.92688 0.92517 0.93758 0.90046 0.93020 0.89855 0.90004 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.80 37.16 0.36 -2.26 16 2 C -0.11 -2.31 5.31 -26.73 -0.14 -2.45 16 3 C 0.17 3.90 1.48 -68.86 -0.10 3.80 16 4 H 0.04 0.99 5.31 -51.93 -0.28 0.71 16 5 C -0.54 -14.64 6.78 -34.44 -0.23 -14.87 16 6 H 0.08 2.51 6.19 -52.49 -0.32 2.18 16 7 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.87 21.41 26.99 -169.99 -4.59 16.82 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.20 6.83 56.52 0.39 -5.82 16 13 N -0.51 -10.50 4.78 -223.31 -1.07 -11.57 16 14 C 0.05 0.92 5.74 -1.90 -0.01 0.91 16 15 C -0.11 -1.83 2.90 -90.02 -0.26 -2.09 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 17 C 0.08 1.18 4.63 -5.13 -0.02 1.16 16 18 N -0.54 -7.24 4.44 -238.58 -1.06 -8.30 16 19 C 0.05 0.58 5.58 -3.83 -0.02 0.56 16 20 C -0.15 -1.32 9.87 37.16 0.37 -0.95 16 21 C 0.02 0.32 5.18 -5.74 -0.03 0.29 16 22 C 0.07 0.94 6.27 34.19 0.21 1.15 16 23 O -0.36 -6.70 9.58 -34.82 -0.33 -7.04 16 24 C 0.10 1.81 3.43 -25.72 -0.09 1.72 16 25 H 0.06 0.94 7.57 -51.93 -0.39 0.54 16 26 C 0.04 0.72 4.96 -2.34 -0.01 0.71 16 27 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.05 1.08 7.05 -51.93 -0.37 0.72 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.65 6.60 -51.93 -0.34 1.31 16 35 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 36 H 0.06 0.89 7.42 -51.93 -0.39 0.51 16 37 H 0.03 0.33 8.13 -51.93 -0.42 -0.09 16 38 H 0.07 0.76 7.75 -51.93 -0.40 0.35 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.47 6.21 -51.93 -0.32 0.15 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.04 0.64 7.70 -51.93 -0.40 0.24 16 43 H 0.08 0.85 5.83 -51.93 -0.30 0.55 16 44 H 0.05 0.67 7.50 -51.93 -0.39 0.28 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.89 5.29 -51.93 -0.27 1.62 16 47 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -29.51 343.28 -9.51 -39.02 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.33 Total: 2.45 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.08 Total: -10.24 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -1.35 Total: -46.18 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.33 Total: -7.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.59 Total: 16.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.51 -9.51 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.302 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds