Wall clock time and date at job start Tue Mar 31 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47293 * 59.99485 * 9 7 5 11 11 H 1.48500 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46897 * 299.99877 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 N 1.46501 * 109.52488 * 177.56148 * 16 15 14 18 18 C 1.34778 * 120.00139 * 154.99819 * 17 16 15 19 19 O 1.21275 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99603 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46822 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.47139 * 299.99813 * 20 18 17 23 23 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 24 24 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 25 25 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 26 26 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 27 27 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 28 28 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 29 29 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 30 30 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 32 32 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 33 33 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 34 34 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 35 35 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 36 36 H 0.97001 * 119.99643 * 334.99705 * 17 16 15 37 37 H 1.08995 * 109.47351 * 59.99869 * 20 18 17 38 38 H 1.08995 * 109.47464 * 59.99694 * 21 20 18 39 39 H 1.08996 * 109.47050 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.46508 * 299.99509 * 21 20 18 41 41 H 1.09003 * 109.46859 * 299.99947 * 22 20 18 42 42 H 1.09001 * 109.47102 * 59.99842 * 22 20 18 43 43 H 1.08996 * 109.46974 * 180.02562 * 22 20 18 44 44 H 1.09006 * 109.50301 * 182.40581 * 23 16 15 45 45 H 1.09002 * 109.49873 * 62.28961 * 23 16 15 46 46 H 1.09009 * 109.46398 * 294.18037 * 24 13 3 47 47 H 1.09001 * 109.46319 * 54.14646 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6014 0.1437 -0.0864 11 1 6.4738 0.1900 -2.5080 12 1 6.5393 2.2663 -1.2574 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 7 1.3298 4.2657 4.8465 18 6 1.7976 5.4413 5.3110 19 8 2.7138 5.9965 4.7427 20 6 1.1828 6.0651 6.5374 21 6 1.8922 7.3846 6.8485 22 6 -0.3022 6.3325 6.2838 23 6 1.2702 4.2401 2.3999 24 6 1.8557 3.5588 1.1610 25 1 -0.3633 0.5861 0.8441 26 1 -0.3634 0.4379 -0.9297 27 1 -0.3633 -1.0241 0.0855 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9152 -0.0921 -2.8797 31 1 3.3471 1.7211 2.3572 32 1 2.1054 0.4475 2.4192 33 1 0.6351 1.9360 3.7423 34 1 2.2057 1.7191 4.5529 35 1 2.9973 3.8685 3.6358 36 1 0.5972 3.8214 5.3013 37 1 1.2904 5.3861 7.3833 38 1 1.7842 8.0634 6.0025 39 1 1.4479 7.8356 7.7357 40 1 2.9502 7.1944 7.0291 41 1 -0.4097 7.0115 5.4379 42 1 -0.8078 5.3927 6.0619 43 1 -0.7466 6.7841 7.1706 44 1 1.4630 5.3118 2.3512 45 1 0.1951 4.0645 2.4380 46 1 2.9285 3.7464 1.1161 47 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:00 Heat of formation + Delta-G solvation = -58.515205 kcal Electronic energy + Delta-G solvation = -23519.508540 eV Core-core repulsion = 20315.137016 eV Total energy + Delta-G solvation = -3204.371525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06565 -38.31871 -35.48377 -34.58003 -33.16184 -31.55300 -30.36158 -29.78610 -27.32299 -26.41035 -24.37863 -23.00193 -22.65883 -21.80490 -20.01240 -19.59455 -18.89100 -17.19197 -16.32312 -16.06146 -15.40181 -15.19554 -14.38804 -14.20115 -14.09488 -13.84614 -13.37770 -13.15544 -13.07954 -12.71831 -12.63626 -12.50821 -12.22248 -12.02595 -11.71112 -11.46638 -11.38154 -11.27219 -11.12519 -10.94583 -10.81350 -10.70460 -10.55983 -10.39674 -10.26115 -9.83918 -9.66255 -9.62282 -9.28407 -9.07055 -8.83244 -8.34885 -7.11026 -5.97773 -4.10987 2.70190 3.24410 3.29531 3.34430 3.37882 4.41033 4.54156 4.68027 4.76131 4.98582 5.09874 5.23722 5.25371 5.30851 5.36789 5.48379 5.58421 5.62782 5.70915 5.77981 5.90991 5.98109 6.01758 6.07751 6.10332 6.29037 6.34459 6.36976 6.48162 6.54595 6.57461 6.68725 6.74084 6.76801 6.88516 7.12495 7.19465 7.37650 7.58548 7.62338 7.77840 7.99009 8.16826 8.31227 8.33491 8.48694 8.98946 9.56738 11.01482 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023005 B = 0.004115 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.813078 B = 6803.057969 C = 7570.829821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.065 3.935 15 C -0.121 4.121 16 C 0.144 3.856 17 N -0.724 5.724 18 C 0.512 3.488 19 O -0.540 6.540 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.120 4.120 24 C 0.066 3.934 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 7.001 15.841 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.160 4.160 16 C 0.040 3.960 17 N -0.374 5.374 18 C 0.298 3.702 19 O -0.417 6.417 20 C -0.138 4.138 21 C -0.190 4.190 22 C -0.201 4.201 23 C -0.159 4.159 24 C -0.063 4.063 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.230 0.770 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.823 7.231 15.283 18.629 hybrid contribution 1.620 -0.190 -0.033 1.631 sum -6.203 7.041 15.250 17.905 Atomic orbital electron populations 1.21720 0.98911 0.98431 1.00578 1.21583 0.92157 0.99163 1.01883 1.19249 0.92755 0.91085 0.86089 0.94457 1.21720 0.92775 1.37669 1.06176 0.92564 1.24895 0.97851 0.95025 0.95547 1.69861 1.35014 1.37789 1.09748 0.86758 0.86290 0.78250 0.77326 1.20335 1.21251 1.20355 1.62420 1.57090 1.01822 1.04428 1.21835 0.96809 0.98984 0.88772 1.21924 1.01874 0.93228 0.98963 1.21110 0.98316 0.92780 0.83758 1.46213 1.38051 1.22816 1.30366 1.20672 0.83005 0.80900 0.85600 1.90708 1.29357 1.61941 1.59668 1.21318 0.96877 0.99060 0.96508 1.21601 1.00552 0.95337 1.01492 1.21783 0.93352 1.02377 1.02591 1.21954 1.00366 0.99172 0.94437 1.21792 0.98857 0.89723 0.95964 0.93106 0.94391 0.95701 0.89076 0.94943 0.92860 0.94169 0.90720 0.91350 0.92157 0.89940 0.76986 0.88779 0.91920 0.92268 0.92019 0.91999 0.92104 0.91582 0.92262 0.91741 0.94555 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.85 37.16 0.37 -2.39 16 2 C -0.11 -2.53 5.14 -26.73 -0.14 -2.67 16 3 C 0.21 5.16 1.72 -68.86 -0.12 5.04 16 4 H 0.04 1.01 7.97 -51.93 -0.41 0.59 16 5 C -0.54 -14.39 7.24 -34.44 -0.25 -14.64 16 6 H 0.06 1.51 5.84 -52.49 -0.31 1.20 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.89 -24.75 11.30 55.43 0.63 -24.12 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -10.80 3.89 -228.08 -0.89 -11.68 16 14 C 0.07 1.21 4.77 -3.83 -0.02 1.19 16 15 C -0.12 -1.75 5.57 -26.65 -0.15 -1.90 16 16 C 0.14 2.15 2.52 -67.81 -0.17 1.98 16 17 N -0.72 -8.61 4.97 -53.69 -0.27 -8.88 16 18 C 0.51 6.68 7.12 -10.98 -0.08 6.60 16 19 O -0.54 -9.49 15.64 5.56 0.09 -9.40 16 20 C -0.12 -1.04 3.26 -91.77 -0.30 -1.34 16 21 C -0.13 -1.22 8.48 37.16 0.32 -0.91 16 22 C -0.14 -1.03 9.09 37.16 0.34 -0.69 16 23 C -0.12 -1.93 5.67 -26.65 -0.15 -2.08 16 24 C 0.07 1.28 5.20 -3.84 -0.02 1.26 16 25 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.38 5.99 -51.93 -0.31 2.07 16 29 H 0.03 0.73 6.33 -51.93 -0.33 0.41 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.04 0.84 6.33 -51.93 -0.33 0.51 16 32 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.46 7.58 -51.92 -0.39 1.07 16 36 H 0.40 3.53 8.02 -40.82 -0.33 3.21 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.78 7.36 -51.92 -0.38 0.40 16 47 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -29.40 358.27 -9.05 -38.45 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.52 Total: 2.80 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.47 Total: -8.76 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.53 Total: -44.68 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.40 -9.05 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.069 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds