Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47506 * 2 1 4 4 H 1.09003 * 109.47222 * 177.44546 * 3 2 1 5 5 C 1.50701 * 109.47513 * 297.44900 * 3 2 1 6 6 H 1.07993 * 120.00516 * 119.99517 * 5 3 2 7 7 C 1.37885 * 119.99361 * 300.00136 * 5 3 2 8 8 N 1.31508 * 120.00160 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99675 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46549 * 89.99997 * 9 7 5 11 11 H 1.48488 * 109.47171 * 209.99731 * 9 7 5 12 12 H 1.48503 * 109.47127 * 330.00472 * 9 7 5 13 13 N 1.46909 * 109.47048 * 57.44451 * 3 2 1 14 14 C 1.46845 * 110.99524 * 54.37946 * 13 3 2 15 15 C 1.53041 * 109.51836 * 185.83801 * 14 13 3 16 16 C 1.53118 * 109.27903 * 300.81724 * 15 14 13 17 17 N 1.46499 * 109.52001 * 177.55931 * 16 15 14 18 18 C 1.34777 * 119.99768 * 85.32490 * 17 16 15 19 19 O 1.21282 * 120.00338 * 359.97438 * 18 17 16 20 20 C 1.50708 * 119.99924 * 179.97438 * 18 17 16 21 21 C 1.53002 * 109.47117 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46955 * 299.99317 * 20 18 17 23 23 C 1.53121 * 109.16104 * 57.65844 * 16 15 14 24 24 C 1.46849 * 110.99731 * 178.58352 * 13 3 2 25 25 H 1.09004 * 109.46826 * 55.27711 * 1 2 3 26 26 H 1.09002 * 109.47560 * 295.27868 * 1 2 3 27 27 H 1.09002 * 109.47439 * 175.27805 * 1 2 3 28 28 H 1.09003 * 109.46663 * 120.00296 * 2 1 3 29 29 H 1.08999 * 109.47163 * 239.99444 * 2 1 3 30 30 H 0.96997 * 119.99726 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46302 * 305.84679 * 14 13 3 32 32 H 1.08998 * 109.46693 * 65.82654 * 14 13 3 33 33 H 1.09003 * 109.50214 * 180.87835 * 15 14 13 34 34 H 1.08998 * 109.50278 * 60.76257 * 15 14 13 35 35 H 1.09000 * 109.52343 * 297.75198 * 16 15 14 36 36 H 0.97001 * 120.00489 * 265.31599 * 17 16 15 37 37 H 1.09000 * 109.47124 * 59.99446 * 20 18 17 38 38 H 1.09000 * 109.47052 * 60.00043 * 21 20 18 39 39 H 1.08998 * 109.47049 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.47023 * 300.00155 * 21 20 18 41 41 H 1.09004 * 109.46871 * 59.99953 * 22 20 18 42 42 H 1.08999 * 109.47265 * 179.97438 * 22 20 18 43 43 H 1.09000 * 109.47310 * 300.00015 * 22 20 18 44 44 H 1.08994 * 109.50313 * 182.40928 * 23 16 15 45 45 H 1.08997 * 109.50351 * 62.27928 * 23 16 15 46 46 H 1.09003 * 109.46218 * 294.17881 * 24 13 3 47 47 H 1.09000 * 109.46519 * 54.14995 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4427 0.0458 5 6 1.5901 2.1344 -1.2608 6 1 0.9659 3.0137 -1.2010 7 6 1.9753 1.6448 -2.4909 8 7 2.7357 0.5744 -2.5638 9 14 1.4171 2.5022 -4.0539 10 1 2.4114 3.5383 -4.4322 11 1 1.2984 1.5066 -5.1492 12 1 0.0977 3.1434 -3.8226 13 7 1.5006 2.1525 1.1674 14 6 1.8070 1.4317 2.4096 15 6 1.1088 2.1192 3.5852 16 6 1.5915 3.5690 3.6822 17 7 0.8835 4.2490 4.7696 18 6 1.3409 4.1553 6.0339 19 8 2.3384 3.5076 6.2714 20 6 0.6129 4.8552 7.1525 21 6 1.3338 4.5889 8.4755 22 6 0.5858 6.3605 6.8800 23 6 1.3044 4.2839 2.3589 24 6 1.9969 3.5337 1.2188 25 1 -0.3633 0.5854 -0.8447 26 1 -0.3634 0.4388 0.9292 27 1 -0.3634 -1.0242 -0.0846 28 1 1.8932 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.0070 0.2302 -3.4291 31 1 1.4548 0.4034 2.3290 32 1 2.8843 1.4346 2.5750 33 1 1.3490 1.5931 4.5092 34 1 0.0305 2.1044 3.4272 35 1 2.6635 3.5837 3.8790 36 1 0.0855 4.7668 4.5797 37 1 -0.4082 4.4785 7.2132 38 1 2.3549 4.9654 8.4150 39 1 0.8075 5.0955 9.2844 40 1 1.3528 3.5165 8.6694 41 1 0.0720 6.5499 5.9374 42 1 0.0588 6.8668 7.6887 43 1 1.6068 6.7372 6.8193 44 1 1.6844 5.3043 2.4066 45 1 0.2291 4.3031 2.1815 46 1 3.0734 3.5266 1.3897 47 1 1.7827 4.0320 0.2733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -55.360263 kcal Electronic energy + Delta-G solvation = -23441.589902 eV Core-core repulsion = 20237.355185 eV Total energy + Delta-G solvation = -3204.234716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10696 -38.35830 -35.55066 -34.61271 -33.29105 -31.49028 -30.44617 -29.61355 -27.34721 -26.35941 -24.47584 -23.32082 -22.51767 -21.84181 -20.17903 -19.51040 -18.77803 -17.17490 -16.30711 -16.10804 -15.50796 -15.15868 -14.32529 -14.19936 -14.14831 -13.80695 -13.53717 -13.47019 -13.09615 -12.80449 -12.54808 -12.46162 -12.17114 -12.05217 -11.82979 -11.54451 -11.40892 -11.31939 -11.17624 -10.92474 -10.75772 -10.68781 -10.54055 -10.36236 -10.12375 -9.87389 -9.76831 -9.55054 -9.34783 -8.94865 -8.72867 -8.38419 -7.12734 -5.99580 -4.03402 2.66173 3.20372 3.29873 3.37255 3.40199 4.40681 4.51067 4.65530 4.72923 4.91417 5.04604 5.20978 5.23655 5.32658 5.33970 5.45248 5.51747 5.59434 5.68345 5.69683 5.87294 5.90367 5.92495 6.03719 6.04929 6.23556 6.24232 6.41610 6.47611 6.50296 6.57703 6.67113 6.68426 6.73829 6.81064 7.13168 7.33201 7.43037 7.55387 7.67027 7.77608 7.84387 8.21959 8.26820 8.35956 8.61792 9.02121 9.60593 11.06719 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.003640 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.402827 B = 7691.517267 C = 8146.392425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.053 3.947 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.724 5.724 18 C 0.513 3.487 19 O -0.542 6.542 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.121 4.121 24 C 0.068 3.932 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.397 0.603 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.020 0.980 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 8.755 15.980 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.159 4.159 16 C 0.040 3.960 17 N -0.374 5.374 18 C 0.299 3.701 19 O -0.419 6.419 20 C -0.138 4.138 21 C -0.190 4.190 22 C -0.201 4.201 23 C -0.159 4.159 24 C -0.061 4.061 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.231 0.769 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.489 8.180 15.949 18.746 hybrid contribution 0.226 0.557 -0.948 1.122 sum -5.262 8.737 15.002 18.140 Atomic orbital electron populations 1.21474 0.97293 0.97617 1.01427 1.21603 0.95120 0.98274 1.00215 1.19249 0.92386 0.90691 0.86543 0.98567 1.21052 1.30850 1.11862 0.89637 0.91996 1.24910 0.95247 0.95078 0.98943 1.69874 1.36176 1.22484 1.24623 0.86585 0.79053 0.79222 0.83072 1.20887 1.21354 1.19875 1.62075 1.59883 1.01127 1.02234 1.22043 0.96813 0.98648 0.90081 1.21929 1.01103 0.94723 0.98102 1.21124 0.97039 0.92273 0.85584 1.46204 1.30857 1.53106 1.07218 1.20678 0.84877 0.80692 0.83836 1.90699 1.25984 1.41684 1.83506 1.21321 1.00843 0.96845 0.94782 1.21599 1.00576 1.02462 0.94325 1.21784 1.02752 0.93398 1.02190 1.21907 1.02151 0.98284 0.93558 1.21865 0.95391 0.90997 0.97896 0.92194 0.94160 0.96591 0.96725 0.88921 0.93025 0.90342 0.96211 0.92234 0.91377 0.90097 0.76863 0.88666 0.91987 0.92240 0.91973 0.92094 0.91534 0.92070 0.92017 0.90937 0.96212 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.41 37.16 0.35 -2.27 16 2 C -0.11 -2.69 4.95 -26.74 -0.13 -2.83 16 3 C 0.22 5.30 1.76 -68.86 -0.12 5.18 16 4 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 5 C -0.50 -12.95 6.64 -34.44 -0.23 -13.18 16 6 H 0.06 1.62 6.81 -52.49 -0.36 1.26 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.99 11.30 55.43 0.63 -24.36 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.53 -10.81 3.78 -228.07 -0.86 -11.67 16 14 C 0.05 0.99 4.83 -3.83 -0.02 0.97 16 15 C -0.12 -1.88 5.67 -26.65 -0.15 -2.03 16 16 C 0.14 2.08 2.52 -67.81 -0.17 1.91 16 17 N -0.72 -8.39 4.97 -53.68 -0.27 -8.66 16 18 C 0.51 6.48 7.12 -10.98 -0.08 6.40 16 19 O -0.54 -9.19 15.65 5.56 0.09 -9.10 16 20 C -0.12 -1.01 3.26 -91.77 -0.30 -1.31 16 21 C -0.13 -1.18 8.48 37.16 0.32 -0.86 16 22 C -0.14 -0.98 9.09 37.16 0.34 -0.64 16 23 C -0.12 -1.73 5.57 -26.65 -0.15 -1.88 16 24 C 0.07 1.25 5.27 -3.83 -0.02 1.23 16 25 H 0.06 1.40 7.15 -51.93 -0.37 1.03 16 26 H 0.04 0.82 7.18 -51.93 -0.37 0.45 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.01 0.32 6.36 -51.93 -0.33 -0.01 16 29 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 31 H 0.08 1.49 5.59 -51.93 -0.29 1.20 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 36 H 0.40 3.50 8.02 -40.82 -0.33 3.17 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.06 0.36 7.57 -51.93 -0.39 -0.03 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 1.79 6.39 -51.93 -0.33 1.45 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -29.51 357.29 -9.04 -38.55 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.53 Total: 1.80 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.46 Total: -7.81 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.50 Total: -44.69 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.51 -9.04 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds