Wall clock time and date at job start Tue Mar 31 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47627 * 2 1 4 4 N 1.46493 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.34782 * 119.99404 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00227 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99658 * 180.02562 * 5 4 3 8 8 H 1.09003 * 109.46484 * 33.89423 * 7 5 4 9 9 C 1.53040 * 109.46407 * 273.91349 * 7 5 4 10 10 C 1.53113 * 109.27839 * 180.80569 * 9 7 5 11 11 C 1.53117 * 109.16360 * 57.65734 * 10 9 7 12 12 C 1.53040 * 109.27425 * 302.33991 * 11 10 9 13 13 N 1.46844 * 109.46282 * 153.85810 * 7 5 4 14 14 C 1.46899 * 111.00473 * 305.85572 * 13 7 5 15 15 H 1.08999 * 109.46797 * 34.76124 * 14 13 7 16 16 C 1.50697 * 109.47616 * 154.76799 * 14 13 7 17 17 H 1.08006 * 119.99768 * 3.78089 * 16 14 13 18 18 C 1.37874 * 120.00147 * 183.78996 * 16 14 13 19 19 N 1.31514 * 119.99706 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99939 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47117 * 59.99921 * 20 18 16 22 22 H 1.48503 * 109.47019 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47105 * 299.99533 * 20 18 16 24 24 C 1.53006 * 109.46973 * 274.77034 * 14 13 7 25 25 C 1.52998 * 109.47028 * 65.25882 * 24 14 13 26 26 H 1.08995 * 109.47843 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47380 * 300.00711 * 1 2 3 28 28 H 1.09002 * 109.46989 * 60.00021 * 1 2 3 29 29 H 1.08993 * 109.47351 * 239.99016 * 2 1 3 30 30 H 1.09010 * 109.46562 * 119.99520 * 2 1 3 31 31 H 1.09005 * 109.46478 * 299.99754 * 3 2 1 32 32 H 1.08997 * 109.47090 * 59.99135 * 3 2 1 33 33 H 0.96994 * 120.00317 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.50035 * 300.74571 * 9 7 5 35 35 H 1.09000 * 109.50218 * 60.82378 * 9 7 5 36 36 H 1.09006 * 109.52311 * 177.56180 * 10 9 7 37 37 H 1.08999 * 109.52684 * 297.68227 * 10 9 7 38 38 H 1.08995 * 109.50840 * 62.28299 * 11 10 9 39 39 H 1.08998 * 109.50460 * 182.36558 * 11 10 9 40 40 H 1.09004 * 109.46309 * 179.19286 * 12 11 10 41 41 H 1.08996 * 109.46569 * 299.16329 * 12 11 10 42 42 H 0.97010 * 119.99406 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46833 * 185.25826 * 24 14 13 44 44 H 1.08996 * 109.46687 * 305.25714 * 24 14 13 45 45 H 1.09005 * 109.46961 * 281.35826 * 25 24 14 46 46 H 1.08996 * 109.47819 * 41.36150 * 25 24 14 47 47 H 1.09000 * 109.46974 * 161.36454 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0011 7 6 5.6860 2.6095 0.0003 8 1 6.0492 1.7562 -0.5725 9 6 6.1959 2.5115 1.4399 10 6 7.7269 2.5320 1.4364 11 6 8.2108 3.8135 0.7522 12 6 7.6426 3.8736 -0.6675 13 7 6.1753 3.8521 -0.6102 14 6 5.5935 4.0479 -1.9448 15 1 4.5720 3.6676 -1.9551 16 6 5.5859 5.5173 -2.2790 17 1 6.0297 6.2283 -1.5977 18 6 5.0123 5.9541 -3.4542 19 7 4.4722 5.0882 -4.2838 20 14 5.0023 7.7756 -3.8681 21 1 6.3992 8.2737 -3.9439 22 1 4.3319 7.9822 -5.1770 23 1 4.2682 8.5190 -2.8128 24 6 6.4289 3.2934 -2.9811 25 6 6.3297 1.7893 -2.7190 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.9900 0.6023 0.0013 34 1 5.8219 3.3574 2.0167 35 1 5.8448 1.5819 1.8878 36 1 8.0938 2.5061 2.4625 37 1 8.1016 1.6643 0.8936 38 1 7.8686 4.6798 1.3182 39 1 9.2999 3.8140 0.7092 40 1 7.9736 4.7919 -1.1526 41 1 7.9964 3.0143 -1.2371 42 1 4.0690 5.3955 -5.1108 43 1 6.0536 3.5137 -3.9804 44 1 7.4700 3.6074 -2.9066 45 1 6.9861 1.5207 -1.8913 46 1 5.3014 1.5316 -2.4656 47 1 6.6311 1.2441 -3.6134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:31 Heat of formation + Delta-G solvation = -41.445417 kcal Electronic energy + Delta-G solvation = -24434.023179 eV Core-core repulsion = 21230.391856 eV Total energy + Delta-G solvation = -3203.631323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95714 -37.78668 -35.39268 -34.67737 -32.41681 -31.94152 -30.59031 -30.16509 -27.09595 -26.18981 -23.79290 -23.23480 -22.43469 -21.53885 -20.01832 -19.64903 -18.74480 -16.59154 -16.19233 -15.83909 -15.52876 -15.14085 -14.27942 -14.15718 -14.00899 -13.95385 -13.72497 -13.11493 -12.94503 -12.71682 -12.54480 -12.28757 -11.99419 -11.93759 -11.70733 -11.50803 -11.16963 -11.14413 -10.92703 -10.86074 -10.74113 -10.64040 -10.50500 -10.36194 -10.17733 -9.94935 -9.65179 -9.46777 -8.93536 -8.78451 -8.59029 -8.17181 -6.98207 -5.85763 -3.85363 3.33097 3.43205 3.46379 3.51173 3.56114 4.54034 4.85358 4.90614 4.94063 5.10935 5.19575 5.24470 5.35290 5.46480 5.56365 5.62321 5.62832 5.69101 5.75175 5.79226 5.94359 5.99101 6.02822 6.08595 6.10399 6.13464 6.22257 6.23624 6.28419 6.32814 6.37552 6.48671 6.70491 6.75574 6.83098 6.84789 7.03602 7.26712 7.48621 7.72164 7.92050 8.01701 8.33611 8.47695 8.70134 8.93199 9.18820 9.76960 11.22559 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.006947 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.628105 B = 4029.730170 C = 5428.613395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.120 3.880 4 N -0.744 5.744 5 C 0.517 3.483 6 O -0.498 6.498 7 C 0.059 3.941 8 H 0.061 0.939 9 C -0.105 4.105 10 C -0.114 4.114 11 C -0.121 4.121 12 C 0.061 3.939 13 N -0.505 5.505 14 C 0.216 3.784 15 H 0.049 0.951 16 C -0.481 4.481 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.154 4.154 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.258 0.742 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.039 0.961 46 H 0.043 0.957 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -12.497 9.254 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.004 4.004 4 N -0.399 5.399 5 C 0.302 3.698 6 O -0.369 6.369 7 C -0.053 4.053 8 H 0.079 0.921 9 C -0.144 4.144 10 C -0.152 4.152 11 C -0.158 4.158 12 C -0.067 4.067 13 N -0.231 5.231 14 C 0.110 3.890 15 H 0.067 0.933 16 C -0.520 4.520 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.539 5.539 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.193 4.193 25 C -0.209 4.209 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.226 0.774 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.269 -11.279 9.371 14.666 hybrid contribution 0.363 -0.193 -0.929 1.015 sum 0.631 -11.472 8.442 14.257 Atomic orbital electron populations 1.21676 0.94861 1.01746 1.02403 1.21720 0.96741 0.96349 1.02373 1.21287 0.80356 0.96395 1.02317 1.46069 1.06777 1.08714 1.78305 1.20598 0.90055 0.83332 0.75818 1.90763 1.69757 1.30818 1.45607 1.21828 0.91037 0.95643 0.96819 0.92135 1.21521 0.95967 1.01611 0.95261 1.21519 0.95196 0.98367 1.00081 1.21670 0.98914 0.97807 0.97455 1.22045 0.88753 1.01185 0.94688 1.62122 1.05444 1.29531 1.25959 1.19467 0.93718 0.95935 0.79859 0.93296 1.21004 1.35944 0.91730 1.03279 0.92240 1.24893 0.95639 0.97387 0.96518 1.69901 1.39372 1.33350 1.11271 0.86621 0.77961 0.85906 0.77236 1.20516 1.21613 1.20340 1.22307 1.00001 0.91412 1.05608 1.22131 0.99844 0.99732 0.99180 0.92497 0.92478 0.92242 0.91418 0.91647 0.91545 0.92010 0.77436 0.90843 0.92362 0.92309 0.92594 0.91356 0.92450 0.90114 0.95214 0.93273 0.89041 0.93922 0.94228 0.93837 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.33 6.05 -26.73 -0.16 -1.50 16 3 C 0.12 1.69 5.67 -4.04 -0.02 1.66 16 4 N -0.74 -11.26 5.56 -60.30 -0.33 -11.59 16 5 C 0.52 10.21 5.65 -10.98 -0.06 10.15 16 6 O -0.50 -12.47 15.34 5.56 0.09 -12.39 16 7 C 0.06 1.07 1.67 -68.87 -0.12 0.96 16 8 H 0.06 1.03 4.43 -51.93 -0.23 0.80 16 9 C -0.11 -1.57 5.36 -26.65 -0.14 -1.71 16 10 C -0.11 -1.50 6.00 -26.61 -0.16 -1.66 16 11 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 12 C 0.06 1.16 4.02 -3.83 -0.02 1.14 16 13 N -0.51 -10.98 4.08 -221.51 -0.90 -11.88 16 14 C 0.22 5.52 1.32 -68.86 -0.09 5.43 16 15 H 0.05 1.43 5.52 -51.93 -0.29 1.14 16 16 C -0.48 -13.81 8.28 -34.44 -0.29 -14.10 16 17 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -26.60 11.59 55.43 0.64 -25.96 16 20 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.15 -3.61 4.75 -26.73 -0.13 -3.74 16 25 C -0.15 -2.92 8.14 37.16 0.30 -2.62 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.67 8.47 -40.82 -0.35 4.33 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.67 7.63 -51.93 -0.40 1.27 16 41 H 0.03 0.54 5.16 -51.93 -0.27 0.28 16 42 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 43 H 0.09 2.45 6.27 -51.93 -0.33 2.13 16 44 H 0.04 0.97 6.10 -51.93 -0.32 0.65 16 45 H 0.04 0.68 5.02 -51.93 -0.26 0.42 16 46 H 0.04 0.85 7.51 -51.93 -0.39 0.46 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -32.77 351.85 -9.28 -42.05 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.28 Total: 4.41 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.77 Total: -7.44 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.60 Total: -49.44 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.77 -9.28 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.608 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds