Wall clock time and date at job start Tue Mar 31 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46897 * 2 1 4 4 N 1.46501 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00139 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99904 * 180.02562 * 5 4 3 8 8 H 1.09000 * 109.46860 * 327.99731 * 7 5 4 9 9 C 1.53041 * 109.46353 * 87.97476 * 7 5 4 10 10 C 1.53118 * 109.28099 * 179.20325 * 9 7 5 11 11 C 1.53115 * 109.15195 * 302.33299 * 10 9 7 12 12 C 1.53031 * 109.28272 * 57.65839 * 11 10 9 13 13 N 1.46843 * 109.46438 * 208.01601 * 7 5 4 14 14 C 1.46901 * 110.99763 * 54.14569 * 13 7 5 15 15 H 1.09002 * 109.47158 * 323.38973 * 14 13 7 16 16 C 1.50701 * 109.47209 * 203.38909 * 14 13 7 17 17 H 1.08006 * 119.99841 * 356.65320 * 16 14 13 18 18 C 1.37876 * 120.00453 * 176.65218 * 16 14 13 19 19 N 1.31513 * 120.00555 * 179.97438 * 18 16 14 20 20 Si 1.86806 * 119.99535 * 359.97438 * 18 16 14 21 21 H 1.48498 * 109.47160 * 90.00290 * 20 18 16 22 22 H 1.48501 * 109.46940 * 210.00155 * 20 18 16 23 23 H 1.48502 * 109.47144 * 329.99993 * 20 18 16 24 24 C 1.52999 * 109.47109 * 83.39146 * 14 13 7 25 25 C 1.52996 * 109.46941 * 298.09890 * 24 14 13 26 26 H 1.09006 * 109.47101 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47739 * 300.00505 * 1 2 3 28 28 H 1.09005 * 109.46813 * 60.00643 * 1 2 3 29 29 H 1.08991 * 109.47251 * 239.99699 * 2 1 3 30 30 H 1.09005 * 109.46813 * 119.99357 * 2 1 3 31 31 H 1.09004 * 109.47125 * 59.99887 * 3 2 1 32 32 H 1.09004 * 109.47255 * 299.99691 * 3 2 1 33 33 H 0.97002 * 119.99487 * 359.72656 * 4 3 2 34 34 H 1.08995 * 109.50396 * 299.13457 * 9 7 5 35 35 H 1.09004 * 109.50335 * 59.25470 * 9 7 5 36 36 H 1.08997 * 109.52358 * 182.43159 * 10 9 7 37 37 H 1.09003 * 109.58167 * 62.26629 * 10 9 7 38 38 H 1.09004 * 109.50516 * 297.71348 * 11 10 9 39 39 H 1.09004 * 109.53409 * 177.62348 * 11 10 9 40 40 H 1.08994 * 109.46635 * 180.80530 * 12 11 10 41 41 H 1.08999 * 109.46153 * 60.83607 * 12 11 10 42 42 H 0.96995 * 120.00174 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47596 * 58.09909 * 24 14 13 44 44 H 1.09002 * 109.47145 * 178.10529 * 24 14 13 45 45 H 1.09002 * 109.47026 * 76.24755 * 25 24 14 46 46 H 1.08997 * 109.47465 * 196.24640 * 25 24 14 47 47 H 1.09002 * 109.47211 * 316.24893 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6098 0.0003 8 1 6.0490 1.7385 0.5452 9 6 6.1958 2.5582 -1.4418 10 6 7.7268 2.5785 -1.4376 11 6 8.2106 3.8374 -0.7126 12 6 7.6423 3.8521 0.7082 13 7 6.1751 3.8323 0.6501 14 6 5.5930 3.9851 1.9902 15 1 4.5609 3.6349 1.9802 16 6 5.6267 5.4378 2.3899 17 1 6.0879 6.1663 1.7394 18 6 5.0688 5.8370 3.5859 19 7 5.0987 7.1046 3.9349 20 14 4.2705 4.5771 4.7106 21 1 5.2864 4.0378 5.6499 22 1 3.1778 5.2233 5.4810 23 1 3.7126 3.4686 3.8950 24 6 6.4015 3.1611 2.9944 25 6 6.3281 1.6806 2.6155 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9900 0.6025 0.0050 34 1 5.8454 1.6432 -1.9192 35 1 5.8218 3.4223 -1.9911 36 1 8.0938 2.5855 -2.4639 37 1 8.1025 1.6944 -0.9224 38 1 7.8683 4.7214 -1.2506 39 1 9.2997 3.8370 -0.6689 40 1 7.9732 4.7543 1.2225 41 1 7.9961 2.9750 1.2500 42 1 4.7058 7.3854 4.7761 43 1 7.4410 3.4887 2.9801 44 1 5.9901 3.3011 3.9941 45 1 6.9832 1.4902 1.7654 46 1 6.6460 1.0726 3.4625 47 1 5.3028 1.4242 2.3487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:34 Heat of formation + Delta-G solvation = -31.937702 kcal Electronic energy + Delta-G solvation = -24574.110197 eV Core-core repulsion = 21370.891159 eV Total energy + Delta-G solvation = -3203.219038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18443 -37.98449 -35.52491 -34.91209 -32.55705 -32.04131 -30.71643 -30.51044 -27.71363 -26.36523 -23.78684 -23.35789 -22.44995 -21.66455 -20.14578 -19.89853 -18.95384 -16.82336 -16.54237 -15.94148 -15.65607 -15.44138 -14.56977 -14.26094 -14.21603 -13.93562 -13.83398 -13.23576 -13.02391 -12.86437 -12.72020 -12.43341 -12.25486 -12.10736 -11.90805 -11.86148 -11.67721 -11.25294 -11.15607 -10.99760 -10.91407 -10.77098 -10.65419 -10.55176 -10.23687 -9.85173 -9.72148 -9.41667 -9.11637 -8.92217 -8.74190 -8.44086 -7.17403 -5.93663 -3.88253 3.16204 3.30024 3.40721 3.42344 3.43488 4.49969 4.67543 4.74652 4.83733 4.98610 5.10083 5.14661 5.23176 5.35064 5.43907 5.50272 5.52327 5.55624 5.62038 5.66506 5.69050 5.77423 5.87649 5.89164 5.93776 5.96463 6.02147 6.10944 6.14853 6.20184 6.20797 6.38830 6.41754 6.54477 6.62404 6.64723 6.70040 6.80788 6.89442 7.20708 7.72110 7.83938 8.02015 8.14328 8.72461 8.82231 9.17531 9.69445 11.20192 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.008071 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.299800 B = 3468.321408 C = 5011.226411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.744 5.744 5 C 0.514 3.486 6 O -0.498 6.498 7 C 0.052 3.948 8 H 0.066 0.934 9 C -0.105 4.105 10 C -0.115 4.115 11 C -0.120 4.120 12 C 0.059 3.941 13 N -0.493 5.493 14 C 0.185 3.815 15 H 0.045 0.955 16 C -0.482 4.482 17 H 0.081 0.919 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.269 1.269 24 C -0.166 4.166 25 C -0.161 4.161 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.030 0.970 42 H 0.261 0.739 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -17.337 -9.189 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.005 4.005 4 N -0.399 5.399 5 C 0.299 3.701 6 O -0.369 6.369 7 C -0.060 4.060 8 H 0.083 0.917 9 C -0.143 4.143 10 C -0.152 4.152 11 C -0.158 4.158 12 C -0.069 4.069 13 N -0.218 5.218 14 C 0.078 3.922 15 H 0.063 0.937 16 C -0.520 4.520 17 H 0.099 0.901 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.194 1.194 24 C -0.205 4.205 25 C -0.218 4.218 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.227 0.773 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.690 -15.977 -9.341 18.520 hybrid contribution -0.062 -1.766 1.386 2.246 sum -0.753 -17.742 -7.955 19.459 Atomic orbital electron populations 1.21680 0.94763 1.01839 1.02438 1.21723 0.96831 0.96223 1.02428 1.21320 0.80246 0.96550 1.02396 1.46102 1.06873 1.08734 1.78187 1.20649 0.90118 0.83394 0.75933 1.90777 1.69742 1.30799 1.45632 1.21984 0.91061 0.95748 0.97178 0.91703 1.21514 0.96053 1.01966 0.94759 1.21532 0.95062 0.98455 1.00179 1.21660 0.99086 0.98134 0.96939 1.22107 0.88006 1.01426 0.95325 1.61938 1.05928 1.31471 1.22417 1.19937 0.93581 0.96758 0.81961 0.93728 1.20867 1.36588 0.90837 1.03732 0.90077 1.24863 0.95796 0.94860 0.97677 1.69874 1.46323 1.14852 1.23161 0.86996 0.79014 0.82107 0.81145 1.20808 1.22268 1.19447 1.22716 1.02755 0.93490 1.01586 1.22238 1.00599 0.98568 1.00405 0.92416 0.92294 0.92371 0.91496 0.91483 0.91699 0.91722 0.77320 0.92216 0.90610 0.92114 0.92586 0.91089 0.92198 0.89459 0.95216 0.92878 0.91410 0.92899 0.92555 0.93851 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.23 6.05 -26.73 -0.16 -1.39 16 3 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 4 N -0.74 -10.49 5.56 -60.29 -0.33 -10.83 16 5 C 0.51 9.62 5.47 -10.99 -0.06 9.56 16 6 O -0.50 -11.97 15.44 5.56 0.09 -11.89 16 7 C 0.05 0.89 1.61 -68.88 -0.11 0.78 16 8 H 0.07 1.00 4.13 -51.93 -0.21 0.79 16 9 C -0.10 -1.48 5.35 -26.65 -0.14 -1.62 16 10 C -0.11 -1.43 6.00 -26.61 -0.16 -1.59 16 11 C -0.12 -1.75 6.09 -26.66 -0.16 -1.92 16 12 C 0.06 1.07 4.07 -3.84 -0.02 1.05 16 13 N -0.49 -10.32 4.09 -221.53 -0.91 -11.23 16 14 C 0.18 4.50 1.05 -68.86 -0.07 4.43 16 15 H 0.05 1.20 4.46 -51.93 -0.23 0.96 16 16 C -0.48 -14.10 8.77 -34.44 -0.30 -14.41 16 17 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 18 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 19 N -0.90 -28.64 13.96 55.43 0.77 -27.87 16 20 Si 0.88 22.93 24.56 -169.99 -4.17 18.76 16 21 H -0.28 -7.04 6.86 56.52 0.39 -6.66 16 22 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 23 H -0.27 -6.91 6.45 56.52 0.36 -6.54 16 24 C -0.17 -3.59 4.44 -26.73 -0.12 -3.71 16 25 C -0.16 -2.74 8.05 37.16 0.30 -2.44 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.39 4.23 8.47 -40.82 -0.35 3.89 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.78 7.60 -51.93 -0.39 1.38 16 41 H 0.03 0.50 5.08 -51.93 -0.26 0.24 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.07 1.42 6.34 -51.93 -0.33 1.09 16 44 H 0.05 1.24 3.70 -51.93 -0.19 1.05 16 45 H 0.06 0.85 4.74 -51.93 -0.25 0.60 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.80 7.37 -51.93 -0.38 0.41 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -34.54 344.26 -8.26 -42.79 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.13 Total: 3.69 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.76 Total: -8.62 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.47 Total: -49.93 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.17 Total: 18.76 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.54 -8.26 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.856 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds