Wall clock time and date at job start Tue Mar 31 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47107 * 2 1 4 4 N 1.46502 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99700 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00266 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99809 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.46620 * 30.59770 * 7 5 4 9 9 C 1.53039 * 109.46439 * 270.61765 * 7 5 4 10 10 C 1.53114 * 109.28158 * 180.80449 * 9 7 5 11 11 C 1.53120 * 109.15897 * 57.65638 * 10 9 7 12 12 C 1.53034 * 109.27866 * 302.33986 * 11 10 9 13 13 N 1.46851 * 109.52028 * 59.18452 * 12 11 10 14 14 C 1.46895 * 111.00166 * 174.16142 * 13 12 11 15 15 H 1.09005 * 109.47476 * 175.36409 * 14 13 12 16 16 C 1.50707 * 109.47124 * 55.36218 * 14 13 12 17 17 H 1.07997 * 119.99852 * 0.02562 * 16 14 13 18 18 C 1.37881 * 119.99732 * 180.02562 * 16 14 13 19 19 N 1.31506 * 120.00182 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46922 * 60.00192 * 20 18 16 22 22 H 1.48493 * 109.46991 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47064 * 300.00326 * 20 18 16 24 24 C 1.53004 * 109.46931 * 295.36376 * 14 13 12 25 25 C 1.52994 * 109.47083 * 294.99611 * 24 14 13 26 26 H 1.09005 * 109.47341 * 299.99973 * 1 2 3 27 27 H 1.08994 * 109.47381 * 60.00271 * 1 2 3 28 28 H 1.09001 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47285 * 239.99271 * 2 1 3 30 30 H 1.09006 * 109.47031 * 119.99945 * 2 1 3 31 31 H 1.09006 * 109.46850 * 299.99413 * 3 2 1 32 32 H 1.08991 * 109.47545 * 59.99629 * 3 2 1 33 33 H 0.96996 * 120.00366 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.50075 * 300.74842 * 9 7 5 35 35 H 1.09003 * 109.50342 * 60.81805 * 9 7 5 36 36 H 1.09003 * 109.52112 * 177.55342 * 10 9 7 37 37 H 1.08997 * 109.52337 * 297.68561 * 10 9 7 38 38 H 1.08994 * 109.50641 * 62.28713 * 11 10 9 39 39 H 1.09002 * 109.49797 * 182.36696 * 11 10 9 40 40 H 1.09001 * 109.46206 * 179.19498 * 12 11 10 41 41 H 1.08998 * 109.46503 * 299.16826 * 12 11 10 42 42 H 0.96998 * 120.00310 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47120 * 55.00108 * 24 14 13 44 44 H 1.09006 * 109.47009 * 174.99680 * 24 14 13 45 45 H 1.09003 * 109.47548 * 300.00234 * 25 24 14 46 46 H 1.09006 * 109.47142 * 60.00150 * 25 24 14 47 47 H 1.09000 * 109.47094 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1788 2.6097 -0.0012 6 8 3.5724 3.6600 -0.0018 7 6 5.6858 2.6097 -0.0025 8 1 6.0486 1.7251 -0.5258 9 6 6.1969 2.5942 1.4400 10 6 7.7279 2.6146 1.4341 11 6 8.2111 3.8549 0.6773 12 6 7.6418 3.8337 -0.7431 13 7 6.1746 3.8155 -0.6834 14 6 5.5916 3.9345 -2.0264 15 1 4.5079 3.8357 -1.9622 16 6 6.1435 2.8470 -2.9118 17 1 6.8558 2.1381 -2.5162 18 6 5.7390 2.7571 -4.2269 19 7 4.8721 3.6206 -4.7087 20 14 6.4237 1.4095 -5.3246 21 1 6.0807 0.0829 -4.7522 22 1 5.8342 1.5298 -6.6822 23 1 7.9001 1.5444 -5.4116 24 6 5.9450 5.3011 -2.6166 25 6 5.2802 6.4019 -1.7878 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.9900 0.6024 -0.0006 34 1 5.8233 3.4717 1.9678 35 1 5.8462 1.6917 1.9407 36 1 8.0957 2.6475 2.4597 37 1 8.1022 1.7172 0.9415 38 1 7.8693 4.7521 1.1931 39 1 9.3003 3.8529 0.6334 40 1 7.9724 4.7228 -1.2801 41 1 7.9952 2.9432 -1.2628 42 1 4.5878 3.5576 -5.6340 43 1 7.0266 5.4359 -2.5988 44 1 5.5890 5.3557 -3.6454 45 1 4.1986 6.2672 -1.8056 46 1 5.6362 6.3474 -0.7590 47 1 5.5323 7.3756 -2.2080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:37 Heat of formation + Delta-G solvation = -53.618486 kcal Electronic energy + Delta-G solvation = -24397.447066 eV Core-core repulsion = 21193.287879 eV Total energy + Delta-G solvation = -3204.159187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70508 -37.59858 -35.32660 -34.65075 -32.33090 -31.85776 -30.76459 -30.13326 -26.63643 -26.12142 -23.86634 -23.05305 -22.32751 -21.46852 -19.93480 -19.44033 -18.78426 -16.76082 -15.91073 -15.82491 -15.47526 -15.08806 -14.38550 -14.19982 -13.91085 -13.67770 -13.23784 -13.05743 -12.88112 -12.73586 -12.61193 -12.28972 -11.95057 -11.93136 -11.58633 -11.34793 -11.12772 -11.08685 -10.91528 -10.82328 -10.69996 -10.68627 -10.42341 -10.36918 -10.09021 -9.82699 -9.53589 -9.21657 -9.05353 -8.79039 -8.54863 -8.24525 -7.05474 -5.94036 -4.08750 3.25885 3.32409 3.33538 3.38594 3.68091 4.39623 4.91914 4.95685 5.00388 5.17935 5.26480 5.29155 5.31573 5.43728 5.63228 5.67823 5.69784 5.79962 5.85348 5.94241 6.02786 6.07172 6.15329 6.20098 6.28947 6.31049 6.33768 6.41944 6.54041 6.58599 6.64275 6.78602 6.87588 6.91055 6.93934 7.26096 7.40804 7.44150 7.68569 7.83567 7.99886 8.07977 8.21665 8.37586 8.55122 8.96774 9.02693 9.58076 11.04339 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.007826 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.104420 B = 3577.056592 C = 4813.181432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.122 3.878 4 N -0.739 5.739 5 C 0.531 3.469 6 O -0.521 6.521 7 C 0.080 3.920 8 H 0.057 0.943 9 C -0.105 4.105 10 C -0.114 4.114 11 C -0.119 4.119 12 C 0.062 3.938 13 N -0.510 5.510 14 C 0.208 3.792 15 H 0.054 0.946 16 C -0.548 4.548 17 H 0.053 0.947 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.884 3.116 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.108 4.108 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.030 0.970 44 H 0.090 0.910 45 H 0.040 0.960 46 H 0.048 0.952 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -6.153 10.728 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.392 5.392 5 C 0.317 3.683 6 O -0.394 6.394 7 C -0.032 4.032 8 H 0.075 0.925 9 C -0.143 4.143 10 C -0.152 4.152 11 C -0.157 4.157 12 C -0.067 4.067 13 N -0.235 5.235 14 C 0.102 3.898 15 H 0.072 0.928 16 C -0.587 4.587 17 H 0.072 0.928 18 C -0.132 4.132 19 N -0.519 5.519 20 Si 0.712 3.288 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.146 4.146 25 C -0.191 4.191 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.503 -4.886 10.819 11.966 hybrid contribution 0.846 -1.984 -1.367 2.554 sum -0.657 -6.871 9.451 11.703 Atomic orbital electron populations 1.21671 0.94935 1.01719 1.02279 1.21726 0.96648 0.96446 1.02494 1.21262 0.80502 0.96381 1.02059 1.46009 1.06702 1.08918 1.77585 1.20515 0.89973 0.83127 0.74654 1.90654 1.70147 1.31164 1.47474 1.21318 0.90678 0.95665 0.95565 0.92540 1.21525 0.95962 1.01675 0.95167 1.21512 0.95240 0.98713 0.99703 1.21664 0.98900 0.97948 0.97226 1.21946 0.88888 1.01471 0.94360 1.62263 1.05703 1.33218 1.22361 1.19445 0.96171 0.92718 0.81453 0.92830 1.21739 1.26363 1.14116 0.96465 0.92845 1.24891 0.94802 0.95659 0.97892 1.69882 1.31502 1.35341 1.15138 0.86804 0.79357 0.82618 0.80048 1.20516 1.21284 1.20352 1.21560 0.97315 0.94228 1.01490 1.21655 1.00388 0.96999 1.00084 0.92553 0.92283 0.92530 0.91281 0.91661 0.91639 0.92145 0.77166 0.91036 0.92397 0.92476 0.92429 0.91725 0.92569 0.90748 0.94450 0.92903 0.95173 0.89193 0.94040 0.93340 0.96060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.14 -1.48 6.05 -26.73 -0.16 -1.64 16 3 C 0.12 1.79 5.67 -4.04 -0.02 1.77 16 4 N -0.74 -12.02 5.56 -60.30 -0.33 -12.35 16 5 C 0.53 10.72 5.79 -10.99 -0.06 10.65 16 6 O -0.52 -12.48 15.30 5.56 0.08 -12.40 16 7 C 0.08 1.53 1.94 -68.87 -0.13 1.40 16 8 H 0.06 1.11 7.21 -51.93 -0.37 0.74 16 9 C -0.10 -1.61 5.36 -26.65 -0.14 -1.76 16 10 C -0.11 -1.58 6.00 -26.61 -0.16 -1.74 16 11 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 12 C 0.06 1.19 4.79 -3.83 -0.02 1.17 16 13 N -0.51 -10.96 3.67 -221.52 -0.81 -11.77 16 14 C 0.21 5.25 1.35 -68.86 -0.09 5.16 16 15 H 0.05 1.56 5.78 -51.93 -0.30 1.26 16 16 C -0.55 -14.51 7.22 -34.44 -0.25 -14.75 16 17 H 0.05 1.40 5.84 -52.49 -0.31 1.09 16 18 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 19 N -0.88 -25.13 11.29 55.43 0.63 -24.50 16 20 Si 0.88 20.97 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.11 -2.68 5.14 -26.73 -0.14 -2.82 16 25 C -0.13 -3.03 9.80 37.15 0.36 -2.67 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 5.38 8.47 -40.82 -0.35 5.03 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.50 6.07 -51.93 -0.32 1.19 16 41 H 0.04 0.77 6.43 -51.93 -0.33 0.44 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.72 6.18 -51.93 -0.32 0.40 16 44 H 0.09 2.49 5.95 -51.93 -0.31 2.18 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.07 7.75 -51.93 -0.40 0.67 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -30.59 357.20 -9.26 -39.85 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.48 Total: 6.29 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.71 Total: -6.45 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.52 Total: -48.63 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.59 -9.26 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.764 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds