Wall clock time and date at job start Tue Mar 31 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47474 * 2 1 4 4 H 1.08999 * 109.47634 * 182.73420 * 3 2 1 5 5 C 1.50694 * 109.47362 * 62.72682 * 3 2 1 6 6 H 1.08003 * 120.00628 * 275.29376 * 5 3 2 7 7 C 1.37883 * 119.99974 * 95.01515 * 5 3 2 8 8 N 1.31513 * 120.00441 * 183.70343 * 7 5 3 9 9 Si 1.86801 * 119.99798 * 3.70299 * 7 5 3 10 10 H 1.48494 * 109.47209 * 87.17901 * 9 7 5 11 11 H 1.48504 * 109.47251 * 207.18015 * 9 7 5 12 12 H 1.48504 * 109.47198 * 327.17965 * 9 7 5 13 13 N 1.46902 * 109.46681 * 302.73012 * 3 2 1 14 14 C 1.46959 * 111.00217 * 296.79784 * 13 3 2 15 15 C 1.53049 * 109.36453 * 176.81386 * 14 13 3 16 16 N 1.46951 * 109.36773 * 58.40067 * 15 14 13 17 17 C 1.46895 * 111.00391 * 176.80772 * 16 15 14 18 18 C 1.53182 * 109.53955 * 63.62603 * 17 16 15 19 19 C 1.53108 * 109.15916 * 183.24077 * 18 17 16 20 20 O 1.42905 * 109.48291 * 57.47219 * 19 18 17 21 21 C 1.42898 * 114.10171 * 298.89230 * 20 19 18 22 22 C 1.53086 * 109.41624 * 61.15804 * 21 20 19 23 23 C 1.46958 * 110.88276 * 300.68241 * 16 15 14 24 24 C 1.46959 * 110.99997 * 173.00043 * 13 3 2 25 25 H 1.09003 * 109.47630 * 183.97581 * 1 2 3 26 26 H 1.09003 * 109.47270 * 303.97787 * 1 2 3 27 27 H 1.09009 * 109.47143 * 63.97484 * 1 2 3 28 28 H 1.08996 * 109.47592 * 239.99639 * 2 1 3 29 29 H 1.09000 * 109.47072 * 119.99444 * 2 1 3 30 30 H 0.96993 * 120.00603 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.48982 * 296.78173 * 14 13 3 32 32 H 1.09000 * 109.48315 * 56.84656 * 14 13 3 33 33 H 1.09003 * 109.49012 * 298.43718 * 15 14 13 34 34 H 1.08999 * 109.50520 * 178.38243 * 15 14 13 35 35 H 1.09001 * 109.54481 * 183.79929 * 17 16 15 36 36 H 1.08993 * 109.52445 * 303.05923 * 18 17 16 37 37 H 1.09005 * 109.52275 * 63.24685 * 18 17 16 38 38 H 1.08999 * 109.40320 * 297.49905 * 19 18 17 39 39 H 1.08996 * 109.49503 * 177.50642 * 19 18 17 40 40 H 1.09005 * 109.47801 * 301.17539 * 21 20 19 41 41 H 1.09004 * 109.49299 * 181.14904 * 21 20 19 42 42 H 1.09004 * 109.52258 * 182.49063 * 22 21 20 43 43 H 1.08995 * 109.57544 * 62.32803 * 22 21 20 44 44 H 1.09001 * 109.48677 * 299.34969 * 23 16 15 45 45 H 1.09003 * 109.50881 * 179.29307 * 23 16 15 46 46 H 1.09002 * 109.49100 * 303.15986 * 24 13 3 47 47 H 1.09007 * 109.48956 * 63.19738 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0490 5 6 1.5937 2.1331 1.2628 6 1 0.6138 2.5843 1.3142 7 6 2.4342 2.1841 2.3547 8 7 2.0182 2.7223 3.4802 9 14 4.1637 1.4886 2.2352 10 1 5.0826 2.5333 1.7163 11 1 4.6170 1.0549 3.5812 12 1 4.1666 0.3245 1.3130 13 7 1.4972 2.1537 -1.1651 14 6 1.9743 1.5526 -2.4184 15 6 1.3254 2.2698 -3.6045 16 7 1.6575 3.7003 -3.5501 17 6 1.1148 4.4115 -4.7152 18 6 -0.4152 4.3395 -4.6924 19 6 -0.9686 5.0126 -5.9513 20 8 -0.4273 4.3750 -7.1100 21 6 0.9961 4.4535 -7.2079 22 6 1.6285 3.7561 -6.0008 23 6 1.1804 4.3014 -2.2968 24 6 1.8294 3.5842 -1.1107 25 1 -0.3634 -1.0252 0.0713 26 1 -0.3634 0.5743 0.8522 27 1 -0.3634 0.4509 -0.9235 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8900 30 1 2.6093 2.7578 4.2484 31 1 3.0578 1.6536 -2.4809 32 1 1.7053 0.4965 -2.4406 33 1 0.2435 2.1457 -3.5570 34 1 1.6996 1.8448 -4.5359 35 1 1.4312 5.4542 -4.6858 36 1 -0.7304 3.2964 -4.6701 37 1 -0.7909 4.8535 -3.8077 38 1 -0.6883 6.0659 -5.9517 39 1 -2.0551 4.9255 -5.9626 40 1 1.3021 5.4996 -7.2248 41 1 1.3253 3.9637 -8.1244 42 1 2.7131 3.8533 -6.0508 43 1 1.3568 2.7005 -6.0052 44 1 0.0969 4.2004 -2.2344 45 1 1.4491 5.3576 -2.2743 46 1 1.4549 4.0093 -0.1795 47 1 2.9113 3.7084 -1.1578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:29 Heat of formation + Delta-G solvation = -36.569240 kcal Electronic energy + Delta-G solvation = -24110.297327 eV Core-core repulsion = 20906.877451 eV Total energy + Delta-G solvation = -3203.419876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.12345 -38.36511 -36.19974 -33.27460 -31.97789 -31.36623 -30.68123 -30.32623 -27.35641 -25.51649 -24.11249 -23.45434 -22.92368 -22.43722 -20.42679 -19.37590 -18.50709 -16.76920 -16.73388 -16.22269 -15.69273 -15.07148 -14.74117 -14.45962 -14.30541 -14.16504 -14.02173 -13.62893 -13.27687 -13.20268 -12.85724 -12.45601 -12.33462 -12.10490 -11.74058 -11.46251 -11.41037 -11.06361 -11.00705 -10.92283 -10.74734 -10.68651 -10.54881 -10.25475 -10.13175 -9.91851 -9.82916 -9.71738 -9.60325 -8.87721 -8.57753 -8.05321 -7.25522 -6.10005 -4.08030 3.25269 3.34469 3.36702 3.69926 4.03363 4.38883 4.61371 4.66375 4.79583 4.85288 5.02724 5.04643 5.19250 5.25472 5.32392 5.45683 5.46895 5.50607 5.58581 5.69189 5.78842 5.80786 5.85284 5.91741 6.00203 6.05307 6.11436 6.16702 6.24646 6.29591 6.38243 6.42171 6.64694 6.76409 6.81963 6.98152 7.01325 7.07396 7.17512 7.26121 7.36069 7.41072 7.63713 8.04181 8.14614 8.65823 8.99146 9.54208 11.02688 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.004273 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.328538 B = 6550.589345 C = 6663.571750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.183 3.817 4 H 0.000 1.000 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.870 3.130 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.525 5.525 14 C 0.051 3.949 15 C 0.056 3.944 16 N -0.531 5.531 17 C 0.085 3.915 18 C -0.191 4.191 19 C 0.066 3.934 20 O -0.386 6.386 21 C 0.063 3.937 22 C -0.151 4.151 23 C 0.056 3.944 24 C 0.070 3.930 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 2.845 -18.170 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.018 0.982 5 C -0.535 4.535 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.698 3.302 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.072 4.072 16 N -0.255 5.255 17 C -0.024 4.024 18 C -0.230 4.230 19 C -0.011 4.011 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.189 4.189 23 C -0.072 4.072 24 C -0.058 4.058 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.001 2.787 -18.076 18.399 hybrid contribution 1.256 -0.241 0.379 1.334 sum -0.745 2.546 -17.697 17.895 Atomic orbital electron populations 1.21459 0.95912 0.98304 1.02470 1.21651 0.96794 0.97667 0.98405 1.19741 0.92089 0.91227 0.89348 0.98206 1.20833 1.03237 1.35277 0.94164 0.90058 1.24974 0.97846 0.94765 0.95333 1.69880 1.36390 1.45153 1.02132 0.86974 0.85849 0.80174 0.77238 1.20437 1.21486 1.19108 1.62243 1.59396 1.02081 1.01264 1.22162 0.96879 0.98327 0.90457 1.22228 0.98768 0.87964 0.98210 1.62432 1.58492 1.02871 1.01697 1.21719 0.91502 0.98407 0.90783 1.22904 0.98315 1.02843 0.98944 1.22511 0.98534 0.95361 0.84699 1.87917 1.20721 1.78212 1.43594 1.22572 0.80923 0.99676 0.98286 1.22329 1.01427 1.01102 0.94037 1.22279 0.98158 0.97841 0.88875 1.21972 0.97374 0.89095 0.97384 0.95964 0.91620 0.93249 0.95518 0.93052 0.92658 0.95493 0.90864 0.94068 0.91095 0.90278 0.90606 0.90413 0.93327 0.89074 0.93275 0.88900 0.90205 0.90634 0.93983 0.91347 0.88344 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.52 37.15 0.35 -2.11 16 2 C -0.11 -2.26 5.33 -26.74 -0.14 -2.40 16 3 C 0.18 4.20 1.39 -68.87 -0.10 4.10 16 4 H 0.00 0.01 5.29 -51.93 -0.27 -0.27 16 5 C -0.50 -13.19 6.18 -34.44 -0.21 -13.40 16 6 H 0.08 2.38 7.82 -52.48 -0.41 1.97 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.87 21.31 27.03 -169.99 -4.59 16.72 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.33 6.76 56.52 0.38 -5.94 16 13 N -0.52 -10.57 3.76 -227.87 -0.86 -11.43 16 14 C 0.05 0.88 5.38 -3.77 -0.02 0.86 16 15 C 0.06 0.82 4.84 -3.77 -0.02 0.81 16 16 N -0.53 -7.64 4.74 -226.27 -1.07 -8.71 16 17 C 0.08 0.99 2.39 -67.53 -0.16 0.83 16 18 C -0.19 -2.13 4.70 -26.58 -0.13 -2.26 16 19 C 0.07 0.66 6.84 37.21 0.25 0.91 16 20 O -0.39 -4.37 10.77 -35.23 -0.38 -4.75 16 21 C 0.06 0.58 6.84 37.20 0.25 0.83 16 22 C -0.15 -1.55 5.17 -26.59 -0.14 -1.69 16 23 C 0.06 0.89 5.14 -3.77 -0.02 0.87 16 24 C 0.07 1.37 5.30 -3.77 -0.02 1.35 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 1.46 7.08 -51.93 -0.37 1.09 16 27 H 0.05 0.94 7.67 -51.92 -0.40 0.55 16 28 H 0.03 0.51 6.55 -51.93 -0.34 0.17 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.23 6.29 -51.93 -0.33 0.91 16 33 H 0.04 0.63 6.50 -51.93 -0.34 0.29 16 34 H 0.07 0.93 5.99 -51.93 -0.31 0.62 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.95 6.42 -51.93 -0.33 0.62 16 37 H 0.08 0.89 6.67 -51.93 -0.35 0.54 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.83 6.11 -51.93 -0.32 0.51 16 44 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.10 2.16 6.71 -51.93 -0.35 1.82 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -28.64 339.27 -9.46 -38.10 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.26 Total: 0.12 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.19 Total: -9.37 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.16 Total: -45.94 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.38 Total: -4.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.59 Total: 16.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.64 -9.46 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.534 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds