Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47362 * 2 1 4 4 H 1.09004 * 109.46731 * 55.00074 * 3 2 1 5 5 C 1.50703 * 109.47479 * 174.99697 * 3 2 1 6 6 H 1.07996 * 119.99684 * 120.00203 * 5 3 2 7 7 C 1.37875 * 119.99987 * 300.00957 * 5 3 2 8 8 N 1.31511 * 120.00292 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99876 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47173 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47407 * 119.99543 * 9 7 5 12 12 H 1.48498 * 109.46977 * 239.99394 * 9 7 5 13 13 N 1.46899 * 109.47564 * 295.00393 * 3 2 1 14 14 C 1.46954 * 111.00194 * 179.97438 * 13 3 2 15 15 C 1.53051 * 109.36231 * 183.18443 * 14 13 3 16 16 N 1.46954 * 109.36779 * 301.60067 * 15 14 13 17 17 C 1.46899 * 111.00127 * 183.18787 * 16 15 14 18 18 C 1.53179 * 109.54381 * 60.17787 * 17 16 15 19 19 C 1.53280 * 109.06328 * 176.85289 * 18 17 16 20 20 O 1.42901 * 109.46155 * 302.44168 * 19 18 17 21 21 C 1.42903 * 114.09356 * 61.15994 * 20 19 18 22 22 C 1.53091 * 109.41633 * 298.84001 * 21 20 19 23 23 C 1.46954 * 110.88135 * 59.32050 * 16 15 14 24 24 C 1.46962 * 110.99667 * 303.79924 * 13 3 2 25 25 H 1.09006 * 109.47226 * 299.99664 * 1 2 3 26 26 H 1.09006 * 109.47405 * 59.99965 * 1 2 3 27 27 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47226 * 240.00336 * 2 1 3 29 29 H 1.09006 * 109.47380 * 120.00591 * 2 1 3 30 30 H 0.97002 * 120.00177 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.48771 * 63.22334 * 14 13 3 32 32 H 1.08997 * 109.48911 * 303.15016 * 14 13 3 33 33 H 1.09003 * 109.48841 * 181.62999 * 15 14 13 34 34 H 1.09001 * 109.48962 * 61.56672 * 15 14 13 35 35 H 1.09002 * 109.54251 * 299.99916 * 17 16 15 36 36 H 1.09006 * 109.52033 * 296.84393 * 18 17 16 37 37 H 1.09002 * 109.52377 * 57.02462 * 18 17 16 38 38 H 1.09007 * 109.45633 * 182.44534 * 19 18 17 39 39 H 1.09003 * 109.46692 * 62.44798 * 19 18 17 40 40 H 1.09000 * 109.47917 * 178.85973 * 21 20 19 41 41 H 1.09000 * 109.49157 * 58.82974 * 21 20 19 42 42 H 1.09004 * 109.52607 * 297.70481 * 22 21 20 43 43 H 1.08999 * 109.57497 * 177.54830 * 22 21 20 44 44 H 1.09002 * 109.49232 * 60.64650 * 23 16 15 45 45 H 1.08997 * 109.48911 * 180.71702 * 23 16 15 46 46 H 1.09001 * 109.48478 * 296.77683 * 24 13 3 47 47 H 1.08996 * 109.48920 * 56.81960 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3372 2.1732 9 14 6.0049 0.8799 1.3812 10 1 6.5988 1.5442 0.1932 11 1 6.4000 1.6156 2.6093 12 1 6.4961 -0.5191 1.4627 13 7 1.6514 2.0994 -1.2551 14 6 2.1250 3.4901 -1.2904 15 6 1.6330 4.1613 -2.5749 16 7 2.1271 3.4101 -3.7373 17 6 1.7384 4.0669 -4.9924 18 6 2.3318 5.4784 -5.0373 19 6 1.9861 6.1243 -6.3837 20 8 2.4851 5.3082 -7.4453 21 6 1.9295 3.9920 -7.4799 22 6 2.2731 3.2603 -6.1798 23 6 1.6535 2.0194 -3.7021 24 6 2.1449 1.3478 -2.4176 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 2.9502 31 1 3.2147 3.5038 -1.2673 32 1 1.7357 4.0288 -0.4265 33 1 2.0073 5.1842 -2.6170 34 1 0.5431 4.1718 -2.5852 35 1 0.6516 4.1262 -5.0517 36 1 1.9138 6.0752 -4.2265 37 1 3.4149 5.4219 -4.9281 38 1 2.4421 7.1128 -6.4399 39 1 0.9039 6.2175 -6.4746 40 1 2.3448 3.4443 -8.3259 41 1 0.8466 4.0570 -7.5852 42 1 3.3550 3.1590 -6.0937 43 1 1.8140 2.2717 -6.1848 44 1 0.5638 2.0056 -3.7252 45 1 2.0427 1.4807 -4.5659 46 1 3.2349 1.3369 -2.4074 47 1 1.7706 0.3251 -2.3750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = -38.443564 kcal Electronic energy + Delta-G solvation = -23968.573968 eV Core-core repulsion = 20765.072815 eV Total energy + Delta-G solvation = -3203.501153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88626 -38.34700 -36.04698 -33.25235 -31.73565 -31.52882 -30.71073 -29.97398 -27.15703 -25.27073 -24.22065 -23.39263 -22.54765 -22.05427 -20.14864 -19.70545 -18.77818 -16.77917 -16.29722 -16.11707 -15.44734 -15.05233 -14.86419 -14.57839 -14.22268 -14.05388 -13.73946 -13.37691 -13.25738 -13.05231 -12.63689 -12.52944 -12.13944 -11.69317 -11.48804 -11.40470 -11.33348 -11.11384 -11.01421 -10.83718 -10.63702 -10.53975 -10.42882 -10.29147 -10.15920 -9.78362 -9.68165 -9.65486 -9.30090 -9.06393 -8.34361 -8.03886 -7.09230 -5.96733 -4.09892 3.27069 3.35950 3.40471 3.71662 4.05053 4.41820 4.60240 4.79056 4.88385 5.03262 5.07695 5.14098 5.26881 5.29022 5.36022 5.48955 5.50941 5.59629 5.66342 5.69064 5.87244 5.88230 5.98542 5.99262 6.08260 6.16764 6.27888 6.28721 6.40396 6.44801 6.61451 6.68836 6.81784 6.91028 7.03792 7.06499 7.18327 7.29682 7.36871 7.42435 7.64570 7.77216 8.00119 8.17438 8.35482 8.47692 9.00784 9.57750 11.02106 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.004397 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.215231 B = 6366.488413 C = 6937.021739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.065 3.935 15 C 0.058 3.942 16 N -0.530 5.530 17 C 0.085 3.915 18 C -0.149 4.149 19 C 0.063 3.937 20 O -0.385 6.385 21 C 0.064 3.936 22 C -0.151 4.151 23 C 0.057 3.943 24 C 0.061 3.939 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 6.988 -14.648 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.064 4.064 15 C -0.070 4.070 16 N -0.255 5.255 17 C -0.024 4.024 18 C -0.187 4.187 19 C -0.014 4.014 20 O -0.303 6.303 21 C -0.014 4.014 22 C -0.189 4.189 23 C -0.071 4.071 24 C -0.068 4.068 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.950 6.952 -14.581 16.894 hybrid contribution 0.857 -0.204 0.519 1.022 sum -4.093 6.747 -14.062 16.125 Atomic orbital electron populations 1.21710 0.98896 0.98374 1.00526 1.21664 0.92196 0.99340 1.02082 1.19267 0.93138 0.90992 0.85866 0.94409 1.21789 0.92858 1.37760 1.05428 0.92372 1.24901 0.97749 0.95068 0.95713 1.69882 1.34661 1.38554 1.09445 0.86640 0.86342 0.77672 0.77967 1.19891 1.21077 1.21071 1.62650 1.58196 1.01259 1.03906 1.21894 0.99192 0.90703 0.94575 1.22258 0.97199 0.96874 0.90658 1.62186 1.59861 1.02483 1.01006 1.21580 0.96591 0.93849 0.90340 1.22328 1.03096 0.95741 0.97573 1.22613 0.98191 0.94258 0.86329 1.87915 1.67524 1.24320 1.50567 1.22577 0.97591 0.83458 0.97738 1.22317 1.03294 0.99246 0.94016 1.22279 0.97343 0.88557 0.98911 1.21994 0.98862 0.97026 0.88890 0.94165 0.93592 0.95610 0.94753 0.88899 0.93019 0.93374 0.91572 0.91236 0.95046 0.94674 0.90750 0.90036 0.88842 0.93495 0.88837 0.93487 0.90026 0.90710 0.95067 0.91221 0.93675 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.15 0.36 -2.41 16 2 C -0.11 -2.67 4.94 -26.73 -0.13 -2.80 16 3 C 0.21 5.19 1.82 -68.86 -0.13 5.06 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.29 7.12 -34.44 -0.25 -14.53 16 6 H 0.06 1.58 5.80 -52.49 -0.30 1.28 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.54 -11.14 4.19 -227.88 -0.95 -12.09 16 14 C 0.07 1.27 5.25 -3.77 -0.02 1.25 16 15 C 0.06 0.92 5.32 -3.77 -0.02 0.90 16 16 N -0.53 -8.13 4.58 -226.27 -1.04 -9.16 16 17 C 0.09 1.06 2.02 -67.53 -0.14 0.93 16 18 C -0.15 -1.69 5.12 -26.49 -0.14 -1.82 16 19 C 0.06 0.63 6.85 37.30 0.26 0.88 16 20 O -0.38 -4.49 10.77 -35.23 -0.38 -4.87 16 21 C 0.06 0.63 6.84 37.20 0.25 0.88 16 22 C -0.15 -1.70 4.97 -26.59 -0.13 -1.83 16 23 C 0.06 0.90 5.23 -3.77 -0.02 0.88 16 24 C 0.06 1.18 4.93 -3.77 -0.02 1.16 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.89 7.75 -51.93 -0.40 0.49 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.78 6.00 -51.93 -0.31 0.47 16 29 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.05 1.05 6.58 -51.93 -0.34 0.71 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 0.98 6.22 -51.93 -0.32 0.66 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.79 6.53 -51.93 -0.34 0.45 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.99 6.14 -51.93 -0.32 0.67 16 46 H 0.04 0.98 6.81 -51.93 -0.35 0.63 16 47 H 0.07 1.44 5.95 -51.93 -0.31 1.13 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -27.81 341.55 -10.10 -37.92 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.28 Total: 0.75 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.21 Total: -9.71 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -1.37 Total: -45.41 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.38 Total: -4.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.81 -10.10 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.527 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds