Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47508 * 2 1 4 4 H 1.09001 * 109.47266 * 182.10563 * 3 2 1 5 5 C 1.50697 * 109.47335 * 62.09858 * 3 2 1 6 6 H 1.07997 * 120.00438 * 244.17023 * 5 3 2 7 7 C 1.37881 * 119.99448 * 64.16649 * 5 3 2 8 8 N 1.31514 * 119.99587 * 194.63579 * 7 5 3 9 9 Si 1.86796 * 120.00194 * 14.63316 * 7 5 3 10 10 H 1.48497 * 109.47101 * 92.18827 * 9 7 5 11 11 H 1.48506 * 109.46858 * 212.18872 * 9 7 5 12 12 H 1.48500 * 109.47097 * 332.18431 * 9 7 5 13 13 N 1.46899 * 109.46855 * 302.10322 * 3 2 1 14 14 C 1.46960 * 111.00093 * 300.27434 * 13 3 2 15 15 C 1.53053 * 109.36639 * 176.81043 * 14 13 3 16 16 N 1.46954 * 109.36280 * 58.40331 * 15 14 13 17 17 C 1.46903 * 111.00316 * 176.81081 * 16 15 14 18 18 C 1.53000 * 109.46743 * 313.80287 * 17 16 15 19 19 H 1.08995 * 110.33036 * 307.24199 * 18 17 16 20 20 C 1.54480 * 110.36875 * 184.99861 * 18 17 16 21 21 C 1.54509 * 104.06266 * 217.18813 * 20 18 17 22 22 C 1.54482 * 104.06202 * 359.97438 * 21 20 18 23 23 O 1.44421 * 110.37502 * 69.61452 * 18 17 16 24 24 C 1.46961 * 110.88248 * 300.67976 * 16 15 14 25 25 C 1.46963 * 111.00399 * 176.47618 * 13 3 2 26 26 H 1.09004 * 109.46943 * 295.04793 * 1 2 3 27 27 H 1.08993 * 109.46980 * 55.04287 * 1 2 3 28 28 H 1.08996 * 109.46839 * 175.04835 * 1 2 3 29 29 H 1.09000 * 109.47266 * 120.00313 * 2 1 3 30 30 H 1.09007 * 109.47264 * 239.99564 * 2 1 3 31 31 H 0.97001 * 120.00143 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.48991 * 296.77920 * 14 13 3 33 33 H 1.09003 * 109.48873 * 56.84269 * 14 13 3 34 34 H 1.08999 * 109.48910 * 298.43509 * 15 14 13 35 35 H 1.09001 * 109.48886 * 178.36858 * 15 14 13 36 36 H 1.09003 * 109.47109 * 73.79509 * 17 16 15 37 37 H 1.08999 * 109.47653 * 193.79650 * 17 16 15 38 38 H 1.08998 * 110.51578 * 335.82845 * 20 18 17 39 39 H 1.09005 * 110.51655 * 98.40664 * 20 18 17 40 40 H 1.08997 * 110.51524 * 118.64347 * 21 20 18 41 41 H 1.09002 * 110.51301 * 241.22386 * 21 20 18 42 42 H 1.09002 * 110.37010 * 142.80756 * 22 21 20 43 43 H 1.08999 * 110.37380 * 265.03762 * 22 21 20 44 44 H 1.09001 * 109.48538 * 299.35193 * 24 16 15 45 45 H 1.09003 * 109.49262 * 179.29028 * 24 16 15 46 46 H 1.09003 * 109.48602 * 303.16060 * 25 13 3 47 47 H 1.09001 * 109.48271 * 63.21459 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1294 1.4426 -0.0378 5 6 1.5807 2.1377 1.2556 6 1 0.9028 2.9759 1.1916 7 6 2.0261 1.7036 2.4862 8 7 1.4211 2.1041 3.5831 9 14 3.4885 0.5466 2.5953 10 1 4.7351 1.3380 2.7526 11 1 3.3220 -0.3526 3.7655 12 1 3.5708 -0.2656 1.3548 13 7 1.5094 2.1494 -1.1732 14 6 1.9324 1.4943 -2.4188 15 6 1.2956 2.2118 -3.6113 16 7 1.6971 3.6254 -3.6005 17 6 1.1664 4.3325 -4.7738 18 6 1.4122 3.4932 -6.0292 19 1 2.4640 3.2163 -6.0997 20 6 0.9754 4.2714 -7.2902 21 6 0.3671 3.1876 -8.2082 22 6 0.5090 1.8828 -7.3935 23 8 0.5792 2.3135 -6.0165 24 6 1.2740 4.2806 -2.3549 25 6 1.9108 3.5631 -1.1625 26 1 -0.3633 0.4351 0.9311 27 1 -0.3633 0.5888 -0.8422 28 1 -0.3633 -1.0238 -0.0887 29 1 1.8933 -0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.7346 1.7991 4.4489 32 1 3.0181 1.5411 -2.5038 33 1 1.6128 0.4522 -2.4084 34 1 0.2102 2.1415 -3.5407 35 1 1.6310 1.7456 -4.5377 36 1 0.0956 4.4927 -4.6478 37 1 1.6682 5.2947 -4.8759 38 1 0.2261 5.0210 -7.0360 39 1 1.8363 4.7398 -7.7674 40 1 -0.6829 3.4014 -8.4078 41 1 0.9262 3.1197 -9.1414 42 1 -0.3604 1.2433 -7.5467 43 1 1.4208 1.3564 -7.6757 44 1 0.1884 4.2338 -2.2701 45 1 1.5937 5.3227 -2.3654 46 1 1.5755 4.0293 -0.2360 47 1 2.9963 3.6333 -1.2330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -24.864272 kcal Electronic energy + Delta-G solvation = -23902.801978 eV Core-core repulsion = 20699.889668 eV Total energy + Delta-G solvation = -3202.912311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.94335 -38.47980 -35.91374 -32.88657 -32.35222 -31.63353 -30.25467 -29.99375 -27.31048 -25.83283 -23.84970 -23.23490 -22.35990 -21.81449 -20.77991 -19.77786 -18.76394 -16.96718 -16.44869 -15.86790 -15.75897 -15.51776 -14.61005 -14.41536 -14.10762 -13.95490 -13.82126 -13.68816 -13.26799 -12.95261 -12.53853 -12.39009 -12.13717 -11.87978 -11.84591 -11.59117 -11.50551 -11.15656 -11.01163 -10.91156 -10.84145 -10.62365 -10.45391 -10.33888 -10.05569 -9.98606 -9.85684 -9.62908 -9.20452 -8.86024 -8.38338 -8.01306 -7.18833 -6.04094 -3.96750 3.31221 3.40659 3.43876 3.72911 4.08909 4.36946 4.46928 4.59073 4.71478 4.88817 4.93481 5.04507 5.26158 5.29155 5.31557 5.44237 5.50328 5.54474 5.58345 5.69698 5.75481 5.76937 5.89891 5.94839 5.98425 6.02873 6.14656 6.25444 6.35484 6.46384 6.48253 6.56526 6.69600 6.72650 6.80049 6.88734 7.03832 7.20421 7.26964 7.35451 7.43005 7.56595 7.76793 8.07426 8.20625 8.73583 9.05892 9.62230 11.08586 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033003 B = 0.004041 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.206500 B = 6927.805755 C = 7271.560829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.190 3.810 4 H -0.009 1.009 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.859 3.141 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.521 5.521 14 C 0.050 3.950 15 C 0.061 3.939 16 N -0.541 5.541 17 C 0.061 3.939 18 C 0.074 3.926 19 H 0.077 0.923 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.039 3.961 23 O -0.361 6.361 24 C 0.058 3.942 25 C 0.068 3.932 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 2.350 -21.947 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.083 3.917 4 H 0.008 0.992 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.246 5.246 14 C -0.078 4.078 15 C -0.066 4.066 16 N -0.266 5.266 17 C -0.067 4.067 18 C 0.017 3.983 19 H 0.095 0.905 20 C -0.187 4.187 21 C -0.192 4.192 22 C -0.038 4.038 23 O -0.280 6.280 24 C -0.069 4.069 25 C -0.060 4.060 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.472 2.234 -21.534 21.655 hybrid contribution 0.948 -0.534 0.020 1.089 sum 0.476 1.700 -21.514 21.587 Atomic orbital electron populations 1.21466 0.95732 0.97836 1.03131 1.21910 0.97048 0.97756 0.98589 1.19600 0.91899 0.91057 0.89187 0.99181 1.20856 1.28552 1.16646 0.87967 0.90197 1.24841 0.96343 0.95745 0.95706 1.69962 1.39261 1.45999 0.97918 0.87299 0.84200 0.81724 0.78157 1.20908 1.21445 1.17840 1.62082 1.59543 1.01529 1.01419 1.22222 0.97022 0.98269 0.90333 1.22378 0.98523 0.87381 0.98355 1.62341 1.59304 1.03251 1.01704 1.22201 0.98560 0.96665 0.89247 1.23050 0.95325 0.85520 0.94427 0.90528 1.22934 1.01405 0.98645 0.95728 1.22915 1.01913 0.95329 0.99024 1.23399 1.01675 0.96226 0.82529 1.89365 1.70603 1.43446 1.24595 1.22233 0.98294 0.97315 0.89105 1.22011 0.97026 0.89758 0.97243 0.91659 0.92657 0.96231 0.92876 0.95421 0.92818 0.95710 0.90817 0.94267 0.89222 0.94195 0.89866 0.90618 0.90492 0.90840 0.90774 0.89336 0.92379 0.94324 0.91363 0.88786 0.95500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.50 37.16 0.35 -2.32 16 2 C -0.11 -2.59 4.57 -26.73 -0.12 -2.71 16 3 C 0.19 4.55 1.31 -68.87 -0.09 4.46 16 4 H -0.01 -0.23 6.86 -51.93 -0.36 -0.59 16 5 C -0.50 -13.78 7.16 -34.44 -0.25 -14.03 16 6 H 0.08 2.39 6.85 -52.49 -0.36 2.03 16 7 C 0.08 2.15 5.35 -17.82 -0.10 2.05 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.86 21.37 25.80 -169.99 -4.39 16.99 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.25 -6.02 5.36 56.52 0.30 -5.72 16 13 N -0.52 -11.05 3.63 -227.88 -0.83 -11.88 16 14 C 0.05 0.94 5.31 -3.76 -0.02 0.92 16 15 C 0.06 1.00 4.30 -3.77 -0.02 0.98 16 16 N -0.54 -8.32 4.86 -234.46 -1.14 -9.46 16 17 C 0.06 0.75 5.02 -3.82 -0.02 0.73 16 18 C 0.07 0.80 2.74 -25.95 -0.07 0.73 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 21 C -0.15 -1.12 7.09 -25.16 -0.18 -1.30 16 22 C 0.04 0.34 7.63 37.94 0.29 0.63 16 23 O -0.36 -4.42 8.03 -35.23 -0.28 -4.70 16 24 C 0.06 0.97 5.58 -3.77 -0.02 0.94 16 25 C 0.07 1.36 5.33 -3.77 -0.02 1.34 16 26 H 0.06 1.57 7.46 -51.93 -0.39 1.18 16 27 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 1.25 4.74 -51.93 -0.25 1.01 16 30 H 0.03 0.56 6.45 -51.93 -0.33 0.23 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.36 6.18 -51.93 -0.32 1.03 16 34 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.09 1.38 5.32 -51.93 -0.28 1.10 16 36 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 2.06 6.23 -51.93 -0.32 1.73 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -29.91 340.87 -9.69 -39.60 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.54 Total: -0.59 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.42 Total: -8.93 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -1.19 Total: -47.51 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.28 Total: -4.70 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.39 Total: 16.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.91 -9.69 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.736 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds