Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46904 * 109.47486 * 295.00613 * 3 2 1 14 14 C 1.46961 * 110.99375 * 298.79552 * 13 3 2 15 15 C 1.53055 * 109.36112 * 176.80918 * 14 13 3 16 16 N 1.46958 * 109.36251 * 58.40293 * 15 14 13 17 17 C 1.46896 * 110.99726 * 176.80884 * 16 15 14 18 18 C 1.53000 * 109.47189 * 293.79948 * 17 16 15 19 19 H 1.08996 * 109.86970 * 59.30087 * 18 17 16 20 20 C 1.54101 * 109.87726 * 180.30633 * 18 17 16 21 21 C 1.54815 * 104.18935 * 121.45086 * 20 18 17 22 22 C 1.55001 * 102.08902 * 20.88365 * 21 20 18 23 23 O 1.43744 * 109.88005 * 298.28975 * 18 17 16 24 24 C 1.46952 * 110.87768 * 300.67435 * 16 15 14 25 25 C 1.46949 * 111.00094 * 174.99610 * 13 3 2 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.49226 * 296.77502 * 14 13 3 33 33 H 1.09004 * 109.49007 * 56.84621 * 14 13 3 34 34 H 1.08996 * 109.48922 * 298.43462 * 15 14 13 35 35 H 1.09001 * 109.48790 * 178.36782 * 15 14 13 36 36 H 1.09004 * 109.47531 * 53.80076 * 17 16 15 37 37 H 1.09000 * 109.46967 * 173.79434 * 17 16 15 38 38 H 1.09001 * 110.48833 * 240.12953 * 20 18 17 39 39 H 1.09003 * 110.49039 * 2.77929 * 20 18 17 40 40 H 1.09002 * 110.90775 * 139.07171 * 21 20 18 41 41 H 1.08994 * 110.90945 * 262.68161 * 21 20 18 42 42 H 1.08995 * 110.62139 * 81.47108 * 22 21 20 43 43 H 1.08997 * 110.61745 * 204.31636 * 22 21 20 44 44 H 1.08991 * 109.49533 * 299.35276 * 24 16 15 45 45 H 1.09004 * 109.48602 * 179.28736 * 24 16 15 46 46 H 1.08990 * 109.49499 * 303.15184 * 25 13 3 47 47 H 1.09000 * 109.48972 * 63.19994 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6513 2.0994 -1.2552 14 6 2.2438 1.4152 -2.4130 15 6 1.7522 2.0795 -3.7012 16 7 2.1217 3.5018 -3.6877 17 6 1.7331 4.1585 -4.9429 18 6 2.5572 3.5827 -6.0962 19 1 2.3875 2.5087 -6.1727 20 6 2.1622 4.2710 -7.4172 21 6 3.4837 4.8923 -7.9314 22 6 4.5499 4.0586 -7.1758 23 8 3.9538 3.8425 -5.8765 24 6 1.5292 4.1859 -2.5300 25 6 2.0209 3.5216 -1.2416 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 2.9501 32 1 3.3303 1.4847 -2.3597 33 1 1.9455 0.3668 -2.4077 34 1 0.6683 1.9860 -3.7678 35 1 2.2130 1.5922 -4.5604 36 1 0.6736 3.9847 -5.1311 37 1 1.9171 5.2300 -4.8644 38 1 1.7820 3.5391 -8.1299 39 1 1.4205 5.0488 -7.2353 40 1 3.5809 4.7627 -9.0093 41 1 3.5496 5.9458 -7.6600 42 1 4.7217 3.1077 -7.6800 43 1 5.4812 4.6177 -7.0857 44 1 0.4428 4.1164 -2.5832 45 1 1.8276 5.2343 -2.5352 46 1 1.5601 4.0090 -0.3825 47 1 3.1048 3.6151 -1.1747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = -36.344057 kcal Electronic energy + Delta-G solvation = -23778.079611 eV Core-core repulsion = 20574.669500 eV Total energy + Delta-G solvation = -3203.410112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66028 -38.43106 -35.76216 -32.76557 -32.13955 -31.37763 -30.15309 -29.95443 -27.18110 -25.48026 -23.69479 -23.04660 -22.51700 -21.76899 -20.67263 -19.63620 -18.72852 -16.66512 -16.27780 -15.89607 -15.53687 -15.30904 -14.56321 -14.29695 -14.10341 -13.89174 -13.72047 -13.49590 -13.23058 -12.73367 -12.40870 -12.08588 -11.94463 -11.76587 -11.63745 -11.52100 -11.20968 -11.10881 -11.00400 -10.90962 -10.76506 -10.57734 -10.50419 -10.35874 -10.18920 -9.75426 -9.61019 -9.50725 -9.26318 -9.00874 -8.28420 -7.89132 -7.02254 -5.91127 -4.03830 3.34911 3.38902 3.43477 3.81373 4.23849 4.42314 4.47254 4.65768 4.77997 4.96292 5.10236 5.18273 5.32152 5.34615 5.41961 5.51791 5.56375 5.59320 5.62576 5.73887 5.76296 5.83564 5.94869 5.99561 6.04720 6.11669 6.25824 6.34841 6.46801 6.50811 6.67862 6.74947 6.90388 6.93669 7.01993 7.13575 7.23076 7.38221 7.46832 7.52069 7.69394 7.83382 8.06326 8.24200 8.41234 8.54708 9.06727 9.63447 11.07811 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.004565 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.960379 B = 6131.807708 C = 6996.494361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.063 3.937 15 C 0.058 3.942 16 N -0.527 5.527 17 C 0.059 3.941 18 C 0.081 3.919 19 H 0.067 0.933 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.040 3.960 23 O -0.349 6.349 24 C 0.062 3.938 25 C 0.065 3.935 26 H 0.038 0.962 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 6.884 -17.455 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.260 5.260 14 C -0.066 4.066 15 C -0.070 4.070 16 N -0.252 5.252 17 C -0.070 4.070 18 C 0.022 3.978 19 H 0.085 0.915 20 C -0.190 4.190 21 C -0.192 4.192 22 C -0.037 4.037 23 O -0.267 6.267 24 C -0.066 4.066 25 C -0.064 4.064 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.640 6.789 -17.037 18.698 hybrid contribution 0.986 -0.047 -0.106 0.993 sum -2.654 6.742 -17.143 18.612 Atomic orbital electron populations 1.21704 0.98951 0.98309 1.00492 1.21624 0.92145 0.99328 1.01965 1.19250 0.93089 0.91041 0.85813 0.94499 1.21741 0.92897 1.37796 1.05428 0.92396 1.24895 0.97721 0.95094 0.95698 1.69868 1.34802 1.38561 1.09446 0.86744 0.86371 0.78234 0.77182 1.20373 1.21379 1.20355 1.62646 1.57745 1.01254 1.04365 1.21958 0.98501 0.97317 0.88808 1.22277 0.97627 0.88117 0.98961 1.62066 1.59256 1.02608 1.01228 1.22256 0.95701 0.99228 0.89800 1.22777 0.82887 0.98761 0.93347 0.91540 1.22992 0.98418 1.00600 0.97010 1.23115 0.94894 1.00659 1.00501 1.23571 0.96938 0.98378 0.84774 1.89142 1.19929 1.91859 1.25788 1.22197 0.96357 0.97210 0.90879 1.21883 0.99635 0.90289 0.94573 0.94238 0.95676 0.93545 0.88961 0.94867 0.92962 0.93398 0.91038 0.95192 0.91553 0.94199 0.90621 0.90768 0.90460 0.90561 0.90598 0.92578 0.89246 0.95082 0.91547 0.91636 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.68 5.07 -26.73 -0.14 -2.82 16 3 C 0.21 5.34 1.75 -68.86 -0.12 5.22 16 4 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 5 C -0.54 -14.67 7.13 -34.44 -0.25 -14.92 16 6 H 0.06 1.62 5.80 -52.49 -0.30 1.32 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.54 -11.52 4.15 -227.87 -0.95 -12.47 16 14 C 0.06 1.28 4.96 -3.76 -0.02 1.26 16 15 C 0.06 0.98 5.41 -3.76 -0.02 0.96 16 16 N -0.53 -8.73 4.62 -234.47 -1.08 -9.81 16 17 C 0.06 0.77 4.43 -3.83 -0.02 0.75 16 18 C 0.08 0.98 3.30 -26.16 -0.09 0.90 16 19 H 0.07 0.84 6.49 -51.93 -0.34 0.50 16 20 C -0.15 -1.34 6.64 -25.20 -0.17 -1.51 16 21 C -0.15 -1.27 7.16 -24.72 -0.18 -1.45 16 22 C 0.04 0.42 7.72 38.21 0.30 0.71 16 23 O -0.35 -5.09 11.11 -35.23 -0.39 -5.48 16 24 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 25 C 0.07 1.32 5.32 -3.77 -0.02 1.30 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 29 H 0.09 2.47 5.95 -51.93 -0.31 2.16 16 30 H 0.03 0.78 6.12 -51.93 -0.32 0.46 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.11 6.51 -51.93 -0.34 0.77 16 33 H 0.07 1.46 6.07 -51.93 -0.32 1.15 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.04 6.33 -51.93 -0.33 0.71 16 36 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 46 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 47 H 0.05 1.07 6.88 -51.93 -0.36 0.72 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -29.12 349.26 -10.47 -39.59 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.45 Total: 0.12 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.46 Total: -9.26 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -1.40 Total: -46.88 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.39 Total: -5.48 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.12 -10.47 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.247 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds