Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 H 1.09001 * 109.46886 * 181.53938 * 3 2 1 5 5 C 1.50700 * 109.46908 * 61.54858 * 3 2 1 6 6 H 1.08002 * 119.99621 * 239.99823 * 5 3 2 7 7 C 1.37873 * 120.00322 * 59.99491 * 5 3 2 8 8 N 1.31514 * 120.00293 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00179 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46736 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47004 * 119.99897 * 9 7 5 12 12 H 1.48501 * 109.46883 * 240.00117 * 9 7 5 13 13 N 1.46891 * 109.47488 * 301.54333 * 3 2 1 14 14 C 1.46958 * 111.00142 * 181.49629 * 13 3 2 15 15 C 1.53048 * 109.36422 * 183.18698 * 14 13 3 16 16 N 1.46952 * 109.37171 * 301.60407 * 15 14 13 17 17 C 1.46900 * 111.00561 * 183.18815 * 16 15 14 18 18 C 1.53000 * 109.47195 * 169.99575 * 17 16 15 19 19 H 1.09002 * 109.87060 * 59.30286 * 18 17 16 20 20 C 1.54098 * 109.87747 * 180.30269 * 18 17 16 21 21 C 1.54814 * 104.18606 * 121.60581 * 20 18 17 22 22 C 1.55001 * 102.09092 * 20.88183 * 21 20 18 23 23 O 1.43741 * 110.00584 * 298.21423 * 18 17 16 24 24 C 1.46958 * 110.88113 * 59.31570 * 16 15 14 25 25 C 1.46956 * 111.00287 * 305.30444 * 13 3 2 26 26 H 1.09009 * 109.47462 * 184.72346 * 1 2 3 27 27 H 1.09006 * 109.46978 * 304.71614 * 1 2 3 28 28 H 1.08991 * 109.47875 * 64.71953 * 1 2 3 29 29 H 1.09000 * 109.46631 * 240.00204 * 2 1 3 30 30 H 1.08994 * 109.46800 * 120.00682 * 2 1 3 31 31 H 0.96991 * 120.00652 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.48398 * 63.22414 * 14 13 3 33 33 H 1.08997 * 109.50710 * 303.16914 * 14 13 3 34 34 H 1.08998 * 109.49144 * 181.63443 * 15 14 13 35 35 H 1.08999 * 109.48819 * 61.57554 * 15 14 13 36 36 H 1.09004 * 109.46837 * 50.00196 * 17 16 15 37 37 H 1.08996 * 109.46922 * 290.00324 * 17 16 15 38 38 H 1.09002 * 110.49140 * 240.28313 * 20 18 17 39 39 H 1.08996 * 110.49171 * 2.93592 * 20 18 17 40 40 H 1.09000 * 110.90772 * 139.07476 * 21 20 18 41 41 H 1.08995 * 110.91306 * 262.68619 * 21 20 18 42 42 H 1.09003 * 110.61520 * 81.47688 * 22 21 20 43 43 H 1.08997 * 110.62066 * 204.31748 * 22 21 20 44 44 H 1.09006 * 109.48398 * 60.65157 * 24 16 15 45 45 H 1.08996 * 109.48995 * 180.71677 * 24 16 15 46 46 H 1.09002 * 109.48473 * 296.77474 * 25 13 3 47 47 H 1.08998 * 109.49242 * 56.84130 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 -0.0276 5 6 1.5692 2.1417 1.2492 6 1 0.9460 3.0206 1.1738 7 6 1.9339 1.6594 2.4883 8 7 2.6931 0.5894 2.5801 9 14 1.3508 2.5265 4.0368 10 1 0.5159 3.6967 3.6642 11 1 0.5463 1.5862 4.8575 12 1 2.5264 2.9856 4.8194 13 7 1.5201 2.1457 -1.1802 14 6 2.0190 3.5270 -1.2325 15 6 1.3934 4.2476 -2.4291 16 7 1.7272 3.5231 -3.6633 17 6 1.2073 4.2263 -4.8436 18 6 1.7796 3.5880 -6.1108 19 1 1.4998 2.5354 -6.1543 20 6 1.2459 4.3237 -7.3551 21 6 2.5215 4.8207 -8.0782 22 6 3.6099 3.8815 -7.4988 23 8 3.2115 3.7139 -6.1212 24 6 1.2283 2.1418 -3.6110 25 6 1.8538 1.4211 -2.4145 26 1 -0.3634 -1.0242 0.0846 27 1 -0.3633 0.5853 0.8448 28 1 -0.3634 0.4388 -0.9291 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.9500 0.2503 3.4518 32 1 3.1037 3.5180 -1.3399 33 1 1.7488 4.0466 -0.3132 34 1 1.7842 5.2635 -2.4868 35 1 0.3106 4.2806 -2.3082 36 1 1.5013 5.2751 -4.8005 37 1 0.1198 4.1543 -4.8597 38 1 0.6879 3.6387 -7.9934 39 1 0.6212 5.1671 -7.0610 40 1 2.4318 4.6930 -9.1570 41 1 2.7310 5.8604 -7.8270 42 1 3.6065 2.9234 -8.0186 43 1 4.5929 4.3480 -7.5624 44 1 0.1436 2.1508 -3.5036 45 1 1.4987 1.6225 -4.5303 46 1 2.9366 1.3883 -2.5353 47 1 1.4630 0.4053 -2.3568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -34.072996 kcal Electronic energy + Delta-G solvation = -23652.454414 eV Core-core repulsion = 20449.142783 eV Total energy + Delta-G solvation = -3203.311631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.72127 -38.47364 -35.81404 -32.93086 -32.19237 -31.28971 -30.19477 -29.90097 -27.08423 -25.55826 -23.92641 -22.99407 -22.61846 -21.82786 -20.72017 -19.64969 -18.64114 -16.72557 -16.10947 -15.97479 -15.55964 -15.47561 -14.53633 -14.34463 -14.14432 -13.88410 -13.76825 -13.51719 -13.43401 -12.82872 -12.38594 -12.11358 -12.05982 -11.81574 -11.64121 -11.40657 -11.36948 -11.19346 -10.96710 -10.91551 -10.76100 -10.65011 -10.45154 -10.34792 -10.08207 -9.81782 -9.65359 -9.53729 -9.29158 -8.72586 -8.34909 -7.95264 -7.04427 -5.95342 -3.98584 3.32332 3.40473 3.44390 3.76003 4.18798 4.38665 4.44920 4.61763 4.73760 4.91647 5.02863 5.12439 5.28602 5.36384 5.37413 5.48248 5.50956 5.55903 5.58577 5.68539 5.71665 5.79322 5.90830 5.91505 6.01805 6.03748 6.18599 6.33275 6.51902 6.57923 6.64258 6.70866 6.80823 6.84666 6.91056 7.15195 7.32100 7.39750 7.46946 7.50164 7.71753 7.81764 7.89351 8.27992 8.41272 8.68062 9.07318 9.65207 11.11135 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033061 B = 0.003690 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.713508 B = 7586.073504 C = 7851.106238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.530 5.530 14 C 0.068 3.932 15 C 0.060 3.940 16 N -0.530 5.530 17 C 0.058 3.942 18 C 0.081 3.919 19 H 0.067 0.933 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.350 6.350 24 C 0.060 3.940 25 C 0.055 3.945 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 6.118 -19.071 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.255 5.255 14 C -0.061 4.061 15 C -0.068 4.068 16 N -0.254 5.254 17 C -0.070 4.070 18 C 0.023 3.977 19 H 0.084 0.916 20 C -0.191 4.191 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.269 6.269 24 C -0.068 4.068 25 C -0.074 4.074 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.316 5.994 -18.716 19.788 hybrid contribution -0.401 0.369 0.628 0.831 sum -2.717 6.363 -18.088 19.366 Atomic orbital electron populations 1.21470 0.97367 0.97548 1.01357 1.21590 0.95062 0.98333 1.00128 1.19250 0.92604 0.90693 0.86359 0.98514 1.21091 1.30658 1.11768 0.89638 0.92040 1.24904 0.95282 0.95118 0.98898 1.69885 1.36647 1.22761 1.23935 0.86535 0.78413 0.79647 0.83381 1.19794 1.21153 1.21231 1.62271 1.59667 1.01390 1.02213 1.21960 0.96607 0.90957 0.96542 1.22225 0.98408 0.96764 0.89392 1.62106 1.59270 1.02340 1.01724 1.22258 0.96257 0.98615 0.89880 1.22779 0.82056 0.98810 0.94075 0.91560 1.22994 0.98356 1.00912 0.96812 1.23123 0.95112 1.00642 1.00337 1.23539 0.98483 0.97966 0.83614 1.89080 1.19998 1.93938 1.23863 1.22203 0.97168 0.88972 0.98424 1.22104 0.97752 0.97641 0.89936 0.96617 0.92201 0.94299 0.96751 0.88989 0.93134 0.95411 0.89583 0.91428 0.94665 0.90532 0.94034 0.90740 0.90410 0.90543 0.90572 0.92592 0.89229 0.94730 0.91482 0.95370 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.44 37.16 0.35 -2.31 16 2 C -0.11 -2.73 4.96 -26.73 -0.13 -2.86 16 3 C 0.22 5.47 1.76 -68.87 -0.12 5.35 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 5 C -0.49 -13.28 6.63 -34.44 -0.23 -13.51 16 6 H 0.06 1.67 6.80 -52.49 -0.36 1.31 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.43 11.31 55.43 0.63 -24.81 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.53 -11.51 3.85 -227.89 -0.88 -12.39 16 14 C 0.07 1.39 5.39 -3.77 -0.02 1.36 16 15 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 16 N -0.53 -8.51 4.62 -234.47 -1.08 -9.60 16 17 C 0.06 0.75 4.44 -3.82 -0.02 0.73 16 18 C 0.08 0.94 3.29 -26.16 -0.09 0.86 16 19 H 0.07 0.79 6.49 -51.93 -0.34 0.45 16 20 C -0.15 -1.29 6.64 -25.20 -0.17 -1.46 16 21 C -0.15 -1.20 7.15 -24.72 -0.18 -1.38 16 22 C 0.04 0.39 7.72 38.21 0.29 0.69 16 23 O -0.35 -4.82 11.10 -35.23 -0.39 -5.22 16 24 C 0.06 0.98 5.41 -3.77 -0.02 0.96 16 25 C 0.05 1.05 4.99 -3.77 -0.02 1.04 16 26 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.06 1.44 7.11 -51.93 -0.37 1.07 16 28 H 0.04 0.81 7.29 -51.93 -0.38 0.43 16 29 H 0.01 0.32 6.36 -51.93 -0.33 -0.01 16 30 H 0.09 2.48 6.03 -51.93 -0.31 2.17 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.84 6.47 -51.93 -0.34 1.51 16 34 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.95 8.03 -51.93 -0.42 0.54 16 37 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.99 6.33 -51.93 -0.33 0.66 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 1.47 5.76 -51.93 -0.30 1.17 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -29.28 348.90 -10.44 -39.72 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.49 Total: -1.26 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.46 Total: -8.02 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -1.33 Total: -46.79 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.39 Total: -5.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.28 -10.44 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.643 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds