Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 H 1.09003 * 109.46998 * 177.82549 * 3 2 1 5 5 C 1.50700 * 109.46950 * 297.82702 * 3 2 1 6 6 H 1.08000 * 120.00263 * 120.00300 * 5 3 2 7 7 C 1.37878 * 120.00038 * 299.99327 * 5 3 2 8 8 N 1.31509 * 120.00127 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99962 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46952 * 120.00384 * 9 7 5 12 12 H 1.48495 * 109.47167 * 240.00438 * 9 7 5 13 13 N 1.46903 * 109.46961 * 57.82479 * 3 2 1 14 14 C 1.46847 * 110.99963 * 182.36792 * 13 3 2 15 15 C 1.53037 * 109.52393 * 174.16204 * 14 13 3 16 16 C 1.53113 * 109.27629 * 59.17709 * 15 14 13 17 17 C 1.52997 * 109.52222 * 182.37623 * 16 15 14 18 18 C 1.53003 * 109.47486 * 179.87179 * 17 16 15 19 19 C 1.53000 * 109.47421 * 299.87464 * 17 16 15 20 20 C 1.50699 * 109.46956 * 59.87510 * 17 16 15 21 21 N 1.34783 * 119.99885 * 180.02562 * 20 17 16 22 22 O 1.21280 * 120.00115 * 0.02562 * 20 17 16 23 23 C 1.53117 * 109.16424 * 302.34608 * 16 15 14 24 24 C 1.46846 * 110.99630 * 58.15878 * 13 3 2 25 25 H 1.08998 * 109.47147 * 305.07714 * 1 2 3 26 26 H 1.08999 * 109.47495 * 65.08051 * 1 2 3 27 27 H 1.09003 * 109.47059 * 185.08160 * 1 2 3 28 28 H 1.08999 * 109.47081 * 240.00343 * 2 1 3 29 29 H 1.08995 * 109.47389 * 120.00121 * 2 1 3 30 30 H 0.97003 * 120.00072 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46272 * 54.14317 * 14 13 3 32 32 H 1.09006 * 109.46008 * 294.17564 * 14 13 3 33 33 H 1.08992 * 109.50262 * 299.23826 * 15 14 13 34 34 H 1.08998 * 109.49912 * 179.11973 * 15 14 13 35 35 H 1.09004 * 109.52578 * 62.25487 * 16 15 14 36 36 H 1.09001 * 109.46590 * 60.00660 * 18 17 16 37 37 H 1.09001 * 109.47597 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47403 * 300.00651 * 18 17 16 39 39 H 1.09000 * 109.46825 * 59.99823 * 19 17 16 40 40 H 1.09006 * 109.47212 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47124 * 300.00206 * 19 17 16 42 42 H 0.96998 * 120.00217 * 359.97438 * 21 20 17 43 43 H 0.97006 * 120.00009 * 179.97438 * 21 20 17 44 44 H 1.09006 * 109.50599 * 177.59519 * 23 16 15 45 45 H 1.09002 * 109.50474 * 297.71537 * 23 16 15 46 46 H 1.08999 * 109.46552 * 305.85089 * 24 13 3 47 47 H 1.08993 * 109.46672 * 65.83557 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0390 5 6 1.5820 2.1371 -1.2565 6 1 0.9582 3.0163 -1.1909 7 6 1.9597 1.6504 -2.4900 8 7 2.7191 0.5797 -2.5701 9 14 1.3927 2.5119 -4.0476 10 1 0.5548 3.6840 -3.6879 11 1 2.5762 2.9683 -4.8196 12 1 0.5967 1.5686 -4.8732 13 7 1.5078 2.1500 1.1723 14 6 1.9316 3.5560 1.1757 15 6 1.2436 4.2948 2.3258 16 6 1.6176 3.6263 3.6515 17 6 0.8859 4.3237 4.8000 18 6 1.2579 3.6529 6.1239 19 6 1.2927 5.7980 4.8434 20 6 -0.6019 4.2193 4.5847 21 7 -1.4519 4.7659 5.4765 22 8 -1.0345 3.6433 3.6090 23 6 1.2092 2.1514 3.6036 24 6 1.8983 1.4747 2.4164 25 1 -0.3633 0.5906 0.8410 26 1 -0.3634 0.4330 -0.9320 27 1 -0.3633 -1.0237 0.0910 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.9845 0.2371 -3.4379 31 1 1.6560 4.0206 0.2289 32 1 3.0127 3.6091 1.3050 33 1 0.1630 4.2539 2.1898 34 1 1.5704 5.3346 2.3375 35 1 2.6939 3.7014 3.8065 36 1 2.3341 3.7286 6.2796 37 1 0.7370 4.1500 6.9422 38 1 0.9682 2.6026 6.0931 39 1 1.0276 6.2759 3.9003 40 1 0.7710 6.2950 5.6614 41 1 2.3688 5.8736 4.9991 42 1 -1.1060 5.2263 6.2571 43 1 -2.4097 4.6990 5.3378 44 1 1.5114 1.6598 4.5284 45 1 0.1279 2.0768 3.4877 46 1 1.5983 0.4277 2.3710 47 1 2.9793 1.5377 2.5401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = -46.611336 kcal Electronic energy + Delta-G solvation = -24472.857063 eV Core-core repulsion = 21269.001729 eV Total energy + Delta-G solvation = -3203.855334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59399 -37.91474 -35.82483 -34.21589 -32.99671 -31.32479 -30.38031 -29.48080 -27.42517 -26.20749 -24.26243 -23.31590 -22.44701 -21.75565 -19.68802 -19.27258 -18.65002 -17.17405 -16.18733 -15.98410 -15.41701 -14.86301 -14.40404 -14.21382 -13.84341 -13.64231 -13.55179 -13.33574 -13.19827 -12.46042 -12.33989 -12.19623 -12.15490 -12.03986 -11.70934 -11.51039 -11.24366 -11.01445 -10.84697 -10.63250 -10.56902 -10.44093 -10.30425 -9.90163 -9.75951 -9.60069 -9.44281 -9.37639 -9.15478 -9.12580 -8.59566 -8.26939 -6.85868 -5.88969 -3.91299 2.74786 3.36519 3.44398 3.49585 3.52677 4.51085 4.60551 4.74320 4.80241 5.12693 5.16103 5.37950 5.41990 5.48822 5.56259 5.63152 5.66177 5.75287 5.93684 5.96367 6.02833 6.14503 6.22763 6.31561 6.45555 6.48986 6.51812 6.61225 6.74167 6.77260 6.80546 6.92186 6.98354 7.03299 7.18688 7.31219 7.35287 7.51891 7.59219 7.82552 7.93818 7.97828 8.38894 8.41306 8.53193 8.81909 9.15822 9.72248 11.17561 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.004791 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.627266 B = 5842.325407 C = 6091.504559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.216 3.784 4 H -0.007 1.007 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.070 3.930 15 C -0.124 4.124 16 C -0.059 4.059 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.142 4.142 20 C 0.520 3.480 21 N -0.862 5.862 22 O -0.508 6.508 23 C -0.121 4.121 24 C 0.057 3.943 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.012 0.988 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.009 0.991 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.396 0.604 43 H 0.397 0.603 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 8.506 18.832 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.011 0.989 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.247 5.247 14 C -0.059 4.059 15 C -0.162 4.162 16 C -0.078 4.078 17 C -0.082 4.082 18 C -0.199 4.199 19 C -0.199 4.199 20 C 0.305 3.695 21 N -0.427 5.427 22 O -0.382 6.382 23 C -0.159 4.159 24 C -0.072 4.072 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.028 0.972 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.224 0.776 43 H 0.228 0.772 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.968 7.961 17.947 20.030 hybrid contribution 0.531 0.624 -0.437 0.929 sum -3.437 8.585 17.510 19.802 Atomic orbital electron populations 1.21462 0.97292 0.97111 1.01987 1.21560 0.95159 0.98291 0.99854 1.19232 0.92149 0.90836 0.86802 0.98946 1.21154 1.30333 1.11676 0.89711 0.91941 1.24899 0.95360 0.95136 0.98851 1.69896 1.36746 1.22717 1.24084 0.86549 0.78321 0.79691 0.83527 1.19785 1.21339 1.21153 1.61945 1.60022 1.01021 1.01680 1.21863 0.95108 0.90513 0.98394 1.21986 1.03924 0.96772 0.93495 1.21011 0.97840 0.95784 0.93158 1.20851 0.91779 0.97531 0.98027 1.21904 1.02263 1.01205 0.94503 1.21906 1.02145 0.93549 1.02304 1.20625 0.89084 0.77566 0.82221 1.43974 1.10124 1.60843 1.27733 1.90754 1.78736 1.40657 1.28066 1.21935 1.03801 0.93551 0.96600 1.21994 0.95579 0.98651 0.90954 0.93109 0.92878 0.96892 0.89172 0.96943 0.93260 0.90019 0.97234 0.88789 0.93453 0.91747 0.91486 0.92729 0.91599 0.91509 0.92741 0.91466 0.77649 0.77223 0.93524 0.88731 0.91202 0.97166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.50 37.16 0.35 -2.52 16 2 C -0.11 -2.79 5.02 -26.73 -0.13 -2.92 16 3 C 0.22 5.64 1.76 -68.86 -0.12 5.52 16 4 H -0.01 -0.20 8.14 -51.93 -0.42 -0.63 16 5 C -0.49 -13.68 6.79 -34.44 -0.23 -13.92 16 6 H 0.06 1.77 6.53 -52.49 -0.34 1.43 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -26.05 11.30 55.43 0.63 -25.42 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 N -0.52 -11.85 3.57 -228.07 -0.81 -12.66 16 14 C 0.07 1.46 5.23 -3.83 -0.02 1.44 16 15 C -0.12 -2.14 4.68 -26.65 -0.12 -2.26 16 16 C -0.06 -0.86 1.58 -90.50 -0.14 -1.01 16 17 C -0.08 -0.86 0.43 -155.66 -0.07 -0.93 16 18 C -0.14 -1.23 8.02 37.16 0.30 -0.94 16 19 C -0.14 -1.27 8.02 37.16 0.30 -0.97 16 20 C 0.52 6.47 6.15 -10.98 -0.07 6.41 16 21 N -0.86 -6.98 8.66 31.22 0.27 -6.71 16 22 O -0.51 -8.81 12.18 5.56 0.07 -8.74 16 23 C -0.12 -2.01 4.68 -26.65 -0.12 -2.14 16 24 C 0.06 1.13 5.17 -3.83 -0.02 1.11 16 25 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 26 H 0.05 1.35 7.46 -51.93 -0.39 0.96 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.51 6.01 -51.93 -0.31 2.20 16 29 H 0.01 0.28 6.37 -51.93 -0.33 -0.05 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.08 1.87 6.14 -51.93 -0.32 1.55 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 1.83 5.46 -51.93 -0.28 1.55 16 34 H 0.05 0.72 6.57 -51.93 -0.34 0.37 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.35 7.57 -51.93 -0.39 -0.05 16 38 H 0.07 0.64 6.50 -51.93 -0.34 0.31 16 39 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 40 H 0.05 0.36 7.56 -51.93 -0.39 -0.04 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 2.01 7.67 -40.82 -0.31 1.70 16 43 H 0.40 2.93 8.93 -40.82 -0.36 2.56 16 44 H 0.05 0.67 6.58 -51.93 -0.34 0.33 16 45 H 0.09 1.78 5.46 -51.93 -0.28 1.50 16 46 H 0.07 1.43 6.00 -51.93 -0.31 1.11 16 47 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -31.81 338.90 -7.83 -39.65 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.87 Total: 3.45 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.20 Total: -11.59 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.08 Total: -44.79 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.81 -7.83 -39.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.963 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds