Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 H 1.09003 * 109.46998 * 177.82549 * 3 2 1 5 5 C 1.50700 * 109.46950 * 297.82702 * 3 2 1 6 6 H 1.08000 * 120.00263 * 120.00300 * 5 3 2 7 7 C 1.37878 * 120.00038 * 299.99327 * 5 3 2 8 8 N 1.31509 * 120.00127 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99962 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47041 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46952 * 120.00384 * 9 7 5 12 12 H 1.48495 * 109.47167 * 240.00438 * 9 7 5 13 13 N 1.46903 * 109.46961 * 57.82479 * 3 2 1 14 14 C 1.46847 * 110.99963 * 182.36792 * 13 3 2 15 15 C 1.53037 * 109.52393 * 174.16204 * 14 13 3 16 16 C 1.53113 * 109.27629 * 59.17709 * 15 14 13 17 17 C 1.52997 * 109.52222 * 182.37623 * 16 15 14 18 18 C 1.53003 * 109.47486 * 179.87179 * 17 16 15 19 19 C 1.53000 * 109.47421 * 299.87464 * 17 16 15 20 20 C 1.50699 * 109.46956 * 59.87510 * 17 16 15 21 21 N 1.34783 * 119.99885 * 180.02562 * 20 17 16 22 22 O 1.21280 * 120.00115 * 0.02562 * 20 17 16 23 23 C 1.53117 * 109.16424 * 302.34608 * 16 15 14 24 24 C 1.46846 * 110.99630 * 58.15878 * 13 3 2 25 25 H 1.08998 * 109.47147 * 305.07714 * 1 2 3 26 26 H 1.08999 * 109.47495 * 65.08051 * 1 2 3 27 27 H 1.09003 * 109.47059 * 185.08160 * 1 2 3 28 28 H 1.08999 * 109.47081 * 240.00343 * 2 1 3 29 29 H 1.08995 * 109.47389 * 120.00121 * 2 1 3 30 30 H 0.97003 * 120.00072 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46272 * 54.14317 * 14 13 3 32 32 H 1.09006 * 109.46008 * 294.17564 * 14 13 3 33 33 H 1.08992 * 109.50262 * 299.23826 * 15 14 13 34 34 H 1.08998 * 109.49912 * 179.11973 * 15 14 13 35 35 H 1.09004 * 109.52578 * 62.25487 * 16 15 14 36 36 H 1.09001 * 109.46590 * 60.00660 * 18 17 16 37 37 H 1.09001 * 109.47597 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47403 * 300.00651 * 18 17 16 39 39 H 1.09000 * 109.46825 * 59.99823 * 19 17 16 40 40 H 1.09006 * 109.47212 * 179.97438 * 19 17 16 41 41 H 1.08999 * 109.47124 * 300.00206 * 19 17 16 42 42 H 0.96998 * 120.00217 * 359.97438 * 21 20 17 43 43 H 0.97006 * 120.00009 * 179.97438 * 21 20 17 44 44 H 1.09006 * 109.50599 * 177.59519 * 23 16 15 45 45 H 1.09002 * 109.50474 * 297.71537 * 23 16 15 46 46 H 1.08999 * 109.46552 * 305.85089 * 24 13 3 47 47 H 1.08993 * 109.46672 * 65.83557 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1293 1.4428 0.0390 5 6 1.5820 2.1371 -1.2565 6 1 0.9582 3.0163 -1.1909 7 6 1.9597 1.6504 -2.4900 8 7 2.7191 0.5797 -2.5701 9 14 1.3927 2.5119 -4.0476 10 1 0.5548 3.6840 -3.6879 11 1 2.5762 2.9683 -4.8196 12 1 0.5967 1.5686 -4.8732 13 7 1.5078 2.1500 1.1723 14 6 1.9316 3.5560 1.1757 15 6 1.2436 4.2948 2.3258 16 6 1.6176 3.6263 3.6515 17 6 0.8859 4.3237 4.8000 18 6 1.2579 3.6529 6.1239 19 6 1.2927 5.7980 4.8434 20 6 -0.6019 4.2193 4.5847 21 7 -1.4519 4.7659 5.4765 22 8 -1.0345 3.6433 3.6090 23 6 1.2092 2.1514 3.6036 24 6 1.8983 1.4747 2.4164 25 1 -0.3633 0.5906 0.8410 26 1 -0.3634 0.4330 -0.9320 27 1 -0.3633 -1.0237 0.0910 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.9845 0.2371 -3.4379 31 1 1.6560 4.0206 0.2289 32 1 3.0127 3.6091 1.3050 33 1 0.1630 4.2539 2.1898 34 1 1.5704 5.3346 2.3375 35 1 2.6939 3.7014 3.8065 36 1 2.3341 3.7286 6.2796 37 1 0.7370 4.1500 6.9422 38 1 0.9682 2.6026 6.0931 39 1 1.0276 6.2759 3.9003 40 1 0.7710 6.2950 5.6614 41 1 2.3688 5.8736 4.9991 42 1 -1.1060 5.2263 6.2571 43 1 -2.4097 4.6990 5.3378 44 1 1.5114 1.6598 4.5284 45 1 0.1279 2.0768 3.4877 46 1 1.5983 0.4277 2.3710 47 1 2.9793 1.5377 2.5401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -69.086919 kcal Electronic energy + Delta-G solvation = -24473.831677 eV Core-core repulsion = 21269.001729 eV Total energy + Delta-G solvation = -3204.829949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65194 -39.48231 -37.13795 -35.55021 -34.35727 -33.20528 -31.86748 -31.03496 -28.40193 -27.98939 -25.83177 -24.74331 -23.82697 -23.34452 -21.33174 -20.48812 -20.15166 -18.14046 -18.04385 -17.28839 -17.01868 -16.09821 -16.02115 -15.49245 -15.27915 -15.04360 -14.86085 -14.83491 -14.67022 -14.03570 -13.86178 -13.61034 -13.31938 -13.06739 -13.03072 -12.94988 -12.83012 -12.57428 -12.40847 -12.37428 -12.18606 -11.92545 -11.81964 -11.67412 -11.58771 -11.32099 -11.11281 -10.76150 -10.63939 -10.40581 -10.35512 -10.24454 -8.73964 -8.07411 -6.16884 1.38535 1.40613 1.52502 1.83610 2.43242 2.74172 3.19828 3.45284 3.68289 3.85033 3.98297 4.21781 4.29129 4.37145 4.50473 4.56120 4.60321 4.66697 4.70582 4.75188 4.81541 4.86331 4.90805 4.95328 5.00396 5.01583 5.08740 5.14313 5.22001 5.27162 5.28381 5.42438 5.44513 5.45578 5.53912 5.57508 5.73534 5.75851 5.79974 5.92054 6.12528 6.34450 6.54051 6.63239 6.88954 6.98188 7.50652 7.57315 8.98490 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.004791 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.627266 B = 5842.325407 C = 6091.504559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C 0.222 3.778 4 H -0.048 1.048 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.528 5.528 14 C 0.070 3.930 15 C -0.113 4.113 16 C -0.057 4.057 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.141 4.141 20 C 0.516 3.484 21 N -0.840 5.840 22 O -0.566 6.566 23 C -0.112 4.112 24 C 0.055 3.945 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.003 0.997 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.414 0.586 43 H 0.403 0.597 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 9.922 21.363 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C 0.115 3.885 4 H -0.031 1.031 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.253 5.253 14 C -0.059 4.059 15 C -0.150 4.150 16 C -0.076 4.076 17 C -0.075 4.075 18 C -0.197 4.197 19 C -0.198 4.198 20 C 0.301 3.699 21 N -0.405 5.405 22 O -0.444 6.444 23 C -0.149 4.149 24 C -0.073 4.073 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.245 0.755 43 H 0.234 0.766 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -4.495 9.413 20.544 23.040 hybrid contribution 0.700 0.194 -1.170 1.377 sum -3.796 9.607 19.373 21.955 Atomic orbital electron populations 1.21291 0.95924 0.98486 1.00643 1.21430 0.96209 0.97541 0.99169 1.19036 0.89660 0.91821 0.88020 1.03112 1.21290 1.30249 1.11501 0.90913 0.93103 1.25620 0.95402 0.95761 1.01713 1.70020 1.37468 1.23735 1.24820 0.85581 0.78022 0.78682 0.79825 1.19567 1.20599 1.20579 1.61927 1.59806 1.01752 1.01771 1.21870 0.95075 0.89933 0.98997 1.21860 1.02058 0.97665 0.93434 1.20969 0.98775 0.94553 0.93303 1.20774 0.90358 0.98833 0.97545 1.21925 1.03466 1.00522 0.93755 1.21931 1.03329 0.91758 1.02764 1.20925 0.90071 0.76986 0.81881 1.43761 1.10121 1.59307 1.27280 1.90746 1.79632 1.43465 1.30569 1.21843 1.02128 0.95019 0.95905 1.22085 0.95747 0.98455 0.91038 0.93211 0.95079 0.94287 0.91837 0.95511 0.93115 0.92843 0.97887 0.90816 0.91283 0.90951 0.90330 0.89663 0.92753 0.93096 0.89614 0.90334 0.75472 0.76575 0.90737 0.90608 0.92044 0.97492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.10 9.50 71.98 0.68 -4.42 16 2 C -0.11 -5.47 5.02 30.59 0.15 -5.32 16 3 C 0.22 12.12 1.76 44.17 0.08 12.20 16 4 H -0.05 -2.98 8.14 -2.39 -0.02 -3.00 16 5 C -0.50 -29.12 6.79 25.60 0.17 -28.94 16 6 H 0.05 3.02 6.53 -2.91 -0.02 3.00 16 7 C 0.01 0.76 5.30 84.66 0.45 1.21 16 8 N -0.92 -55.09 11.30 21.45 0.24 -54.85 16 9 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 N -0.53 -24.88 3.57 -875.49 -3.13 -28.01 16 14 C 0.07 3.04 5.23 86.33 0.45 3.49 16 15 C -0.11 -3.88 4.68 30.64 0.14 -3.74 16 16 C -0.06 -1.59 1.58 -10.72 -0.02 -1.61 16 17 C -0.07 -1.37 0.43 -52.93 -0.02 -1.40 16 18 C -0.14 -1.86 8.02 71.98 0.58 -1.28 16 19 C -0.14 -1.99 8.02 71.98 0.58 -1.41 16 20 C 0.52 11.81 6.15 87.66 0.54 12.35 16 21 N -0.84 -11.05 8.66 -173.53 -1.50 -12.56 16 22 O -0.57 -19.48 12.18 -3.03 -0.04 -19.52 16 23 C -0.11 -3.61 4.68 30.65 0.14 -3.47 16 24 C 0.05 2.22 5.17 86.33 0.45 2.66 16 25 H 0.05 2.37 7.37 -2.39 -0.02 2.35 16 26 H 0.03 1.59 7.46 -2.39 -0.02 1.57 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 3.66 6.01 -2.39 -0.01 3.65 16 29 H 0.03 1.28 6.37 -2.39 -0.02 1.26 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.05 2.59 6.14 -2.38 -0.01 2.57 16 32 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.07 2.93 5.46 -2.39 -0.01 2.92 16 34 H 0.07 2.04 6.57 -2.39 -0.02 2.03 16 35 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.63 7.57 -2.39 -0.02 0.61 16 38 H 0.05 0.87 6.50 -2.39 -0.02 0.86 16 39 H 0.05 0.90 6.49 -2.39 -0.02 0.88 16 40 H 0.09 0.69 7.56 -2.38 -0.02 0.67 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.41 2.39 7.67 -92.71 -0.71 1.68 16 43 H 0.40 4.95 8.93 -92.70 -0.83 4.12 16 44 H 0.07 1.99 6.58 -2.38 -0.02 1.97 16 45 H 0.08 2.84 5.46 -2.39 -0.01 2.83 16 46 H 0.06 2.54 6.00 -2.39 -0.01 2.52 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -72.93 338.90 1.42 -71.52 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.56 Total: 15.10 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.38 Total: -19.66 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.39 Total: -95.41 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -72.93 1.42 -71.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds