Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46957 * 2 1 4 4 H 1.08999 * 109.46834 * 55.00020 * 3 2 1 5 5 C 1.50698 * 109.47386 * 175.00066 * 3 2 1 6 6 H 1.08003 * 120.00025 * 114.84211 * 5 3 2 7 7 C 1.37877 * 119.99911 * 294.84808 * 5 3 2 8 8 N 1.31512 * 120.00119 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00024 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46796 * 90.00590 * 9 7 5 11 11 H 1.48493 * 109.47195 * 210.00059 * 9 7 5 12 12 H 1.48500 * 109.47013 * 330.00813 * 9 7 5 13 13 N 1.46901 * 109.46898 * 294.99865 * 3 2 1 14 14 C 1.47484 * 110.99963 * 173.37226 * 13 3 2 15 15 C 1.53518 * 87.93264 * 221.29863 * 14 13 3 16 16 N 1.46896 * 114.16910 * 139.67255 * 15 14 13 17 17 C 1.47016 * 111.00417 * 77.67847 * 16 15 14 18 18 C 1.53096 * 109.25944 * 182.39296 * 17 16 15 19 19 O 1.43013 * 109.25691 * 303.15049 * 18 17 16 20 20 C 1.43017 * 113.74100 * 58.67133 * 19 18 17 21 21 C 1.53003 * 109.50667 * 181.39563 * 20 19 18 22 22 C 1.52996 * 109.50728 * 61.26476 * 20 19 18 23 23 C 1.47017 * 110.99669 * 201.31396 * 16 15 14 24 24 C 1.47487 * 110.99785 * 77.40419 * 13 3 2 25 25 H 1.09008 * 109.46476 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47056 * 60.00443 * 1 2 3 27 27 H 1.08999 * 109.47098 * 300.00021 * 1 2 3 28 28 H 1.09005 * 109.47451 * 119.99782 * 2 1 3 29 29 H 1.08995 * 109.47428 * 240.00356 * 2 1 3 30 30 H 0.97000 * 119.99960 * 179.97438 * 8 7 5 31 31 H 1.09001 * 113.47553 * 336.06616 * 14 13 3 32 32 H 1.08992 * 113.47528 * 106.53313 * 14 13 3 33 33 H 1.08997 * 114.34196 * 272.36623 * 15 14 13 34 34 H 1.08998 * 109.50292 * 302.32654 * 17 16 15 35 35 H 1.08994 * 109.50500 * 62.45309 * 17 16 15 36 36 H 1.08998 * 109.50279 * 183.21484 * 18 17 16 37 37 H 1.09000 * 109.54301 * 63.10728 * 18 17 16 38 38 H 1.08999 * 109.46667 * 179.78253 * 21 20 19 39 39 H 1.09000 * 109.47367 * 299.78558 * 21 20 19 40 40 H 1.08997 * 109.46957 * 59.78279 * 21 20 19 41 41 H 1.09002 * 109.46896 * 300.21777 * 22 20 19 42 42 H 1.09001 * 109.46699 * 60.21918 * 22 20 19 43 43 H 1.09003 * 109.47265 * 180.21647 * 22 20 19 44 44 H 1.08993 * 109.50402 * 297.53715 * 23 16 15 45 45 H 1.08998 * 109.50843 * 57.67551 * 23 16 15 46 46 H 1.09005 * 113.46868 * 253.46842 * 24 13 3 47 47 H 1.08993 * 113.47600 * 23.87061 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4445 0.1238 6 1 4.1502 1.8133 -0.6888 7 6 4.1393 0.9753 1.2744 8 7 5.4500 0.9774 1.3827 9 14 3.0870 0.3379 2.6801 10 1 2.8547 -1.1182 2.5037 11 1 3.7860 0.5749 3.9686 12 1 1.7839 1.0500 2.6853 13 7 1.6513 2.0993 -1.2553 14 6 1.9871 3.5351 -1.2266 15 6 0.6355 3.8078 -1.9015 16 7 -0.0682 4.9885 -1.3832 17 6 0.5105 6.2267 -1.9248 18 6 -0.2116 7.4308 -1.3144 19 8 -1.6126 7.3258 -1.5817 20 6 -2.2090 6.1319 -1.0676 21 6 -3.6936 6.1027 -1.4364 22 6 -2.0592 6.1006 0.4547 23 6 -1.5071 4.9146 -1.6755 24 6 0.2290 2.4886 -1.2297 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 5.8702 0.6476 2.1924 31 1 2.0596 3.9440 -0.2188 32 1 2.8434 3.7932 -1.8495 33 1 0.6603 3.7650 -2.9903 34 1 1.5704 6.2728 -1.6748 35 1 0.3905 6.2411 -3.0081 36 1 0.1754 8.3492 -1.7557 37 1 -0.0468 7.4470 -0.2370 38 1 -4.1466 5.1907 -1.0477 39 1 -4.1927 6.9696 -1.0034 40 1 -3.7990 6.1270 -2.5210 41 1 -1.0012 6.1234 0.7162 42 1 -2.5591 6.9674 0.8869 43 1 -2.5105 5.1886 0.8456 44 1 -1.6593 4.9081 -2.7548 45 1 -1.9200 4.0031 -1.2435 46 1 -0.4045 1.8599 -1.8554 47 1 -0.1679 2.6172 -0.2228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = 4.753830 kcal Electronic energy + Delta-G solvation = -24126.884216 eV Core-core repulsion = 20925.256243 eV Total energy + Delta-G solvation = -3201.627974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46169 -39.20771 -35.46250 -33.70724 -33.52955 -31.92603 -29.31112 -28.30918 -27.42047 -26.51204 -24.88870 -24.30341 -22.76395 -22.10447 -19.70661 -19.35954 -19.11314 -16.91845 -16.49773 -16.35958 -15.68464 -15.18168 -14.97775 -14.73516 -14.40693 -14.32659 -13.37525 -13.27242 -13.07181 -12.77174 -12.51284 -12.38777 -12.25910 -12.14354 -12.00949 -11.93996 -11.75812 -11.73135 -11.46016 -11.36999 -11.22760 -10.82844 -10.51396 -10.32685 -10.19494 -9.85824 -9.77590 -9.60270 -9.29267 -9.03536 -8.56667 -8.31028 -7.97165 -6.09221 -4.08211 3.24926 3.35087 3.36099 3.61151 3.82189 4.37917 4.54705 4.73422 4.84121 4.90999 4.92006 5.06383 5.17202 5.20775 5.32551 5.42282 5.45520 5.48684 5.52999 5.56703 5.67817 5.71574 5.80544 5.85360 5.87126 5.89938 5.96195 6.01502 6.05002 6.09060 6.14335 6.27654 6.37447 6.42831 6.51836 6.59914 6.72474 6.83266 6.98891 7.07643 7.16357 7.19327 7.39784 7.76338 7.92027 8.58603 8.98169 9.52867 11.03759 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.004662 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.951439 B = 6004.216021 C = 6278.023706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.009 0.991 5 C -0.506 4.506 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.265 1.265 13 N -0.455 5.455 14 C 0.039 3.961 15 C 0.034 3.966 16 N -0.521 5.521 17 C 0.019 3.981 18 C 0.062 3.938 19 O -0.380 6.380 20 C 0.114 3.886 21 C -0.137 4.137 22 C -0.168 4.168 23 C 0.033 3.967 24 C 0.009 3.991 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 10.015 -4.769 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.157 4.157 3 C 0.049 3.951 4 H 0.027 0.973 5 C -0.544 4.544 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.190 1.190 13 N -0.178 5.178 14 C -0.091 4.091 15 C -0.074 4.074 16 N -0.246 5.246 17 C -0.109 4.109 18 C -0.015 4.015 19 O -0.299 6.299 20 C 0.074 3.926 21 C -0.195 4.195 22 C -0.226 4.226 23 C -0.095 4.095 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.751 9.635 -4.735 19.062 hybrid contribution -0.518 -0.322 0.853 1.048 sum -16.269 9.313 -3.882 19.144 Atomic orbital electron populations 1.22212 0.98382 1.00306 1.01413 1.21828 0.92984 0.99536 1.01333 1.20268 0.97179 0.91029 0.86647 0.97311 1.20901 0.88649 1.42195 1.02662 0.90264 1.24906 0.94733 0.95294 0.97994 1.69883 1.08713 1.47081 1.27982 0.86957 0.80912 0.79570 0.81842 1.20318 1.22136 1.19039 1.68837 1.03316 1.10214 1.35435 1.23469 0.94681 0.90606 1.00317 1.23551 0.97146 0.89456 0.97250 1.62450 1.02049 1.01788 1.58302 1.22728 1.00292 0.90355 0.97550 1.22661 0.80945 0.97377 1.00505 1.87986 1.22100 1.41010 1.78851 1.21550 0.93031 0.84398 0.93591 1.21739 0.92979 1.02550 1.02208 1.22273 1.03668 1.01866 0.94767 1.22693 0.89075 0.98968 0.98798 1.23962 0.94978 0.93222 0.99864 0.94186 0.91748 0.93998 0.93172 0.91589 0.92621 0.90671 0.90841 0.91055 0.89320 0.94236 0.88734 0.91990 0.90995 0.91692 0.92030 0.90762 0.92614 0.91775 0.94305 0.89748 0.90810 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.85 37.16 0.33 -2.61 16 2 C -0.12 -2.60 5.18 -26.73 -0.14 -2.74 16 3 C 0.16 3.68 0.92 -68.86 -0.06 3.62 16 4 H 0.01 0.23 6.25 -51.93 -0.32 -0.10 16 5 C -0.51 -14.11 8.68 -34.44 -0.30 -14.41 16 6 H 0.08 2.43 8.02 -52.48 -0.42 2.01 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.88 21.78 24.67 -169.99 -4.19 17.59 16 10 H -0.28 -6.71 6.85 56.52 0.39 -6.33 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.34 6.40 56.52 0.36 -5.98 16 13 N -0.46 -9.29 6.12 -237.97 -1.46 -10.74 16 14 C 0.04 0.72 6.53 -7.53 -0.05 0.67 16 15 C 0.03 0.52 3.45 -67.49 -0.23 0.29 16 16 N -0.52 -6.98 4.06 -226.00 -0.92 -7.89 16 17 C 0.02 0.23 5.61 -3.71 -0.02 0.21 16 18 C 0.06 0.68 6.61 37.21 0.25 0.93 16 19 O -0.38 -4.68 10.28 -35.23 -0.36 -5.04 16 20 C 0.11 1.26 1.11 -90.57 -0.10 1.16 16 21 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 22 C -0.17 -1.84 8.17 37.16 0.30 -1.54 16 23 C 0.03 0.39 4.23 -3.71 -0.02 0.38 16 24 C 0.01 0.15 4.16 -7.53 -0.03 0.12 16 25 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.06 1.05 4.60 -51.93 -0.24 0.81 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.16 3.96 -51.93 -0.21 0.96 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 31 H 0.08 1.51 7.82 -51.93 -0.41 1.11 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.69 6.49 -51.93 -0.34 0.35 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.92 6.12 -51.93 -0.32 0.60 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.98 7.43 -51.93 -0.39 0.60 16 46 H 0.07 1.12 6.73 -51.93 -0.35 0.77 16 47 H 0.07 1.19 7.28 -51.93 -0.38 0.81 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -30.01 344.00 -9.27 -39.28 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.46 Total: 1.05 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 0.16 Total: -12.84 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -1.60 Total: -45.21 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.19 Total: 17.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.01 -9.27 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.033 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds