Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.09008 * 109.47308 * 305.00430 * 3 2 1 5 5 C 1.50701 * 109.47466 * 184.99957 * 3 2 1 6 6 H 1.07996 * 120.00482 * 240.00345 * 5 3 2 7 7 C 1.37876 * 119.99762 * 60.00131 * 5 3 2 8 8 N 1.31517 * 120.00247 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00338 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47108 * 89.99468 * 9 7 5 11 11 H 1.48491 * 109.47638 * 209.99852 * 9 7 5 12 12 H 1.48503 * 109.46936 * 330.00499 * 9 7 5 13 13 N 1.46902 * 109.47015 * 64.99907 * 3 2 1 14 14 C 1.46902 * 110.99497 * 65.70187 * 13 3 2 15 15 C 1.53246 * 109.33711 * 187.25382 * 14 13 3 16 16 N 1.47086 * 108.51814 * 306.16785 * 15 14 13 17 17 C 1.34771 * 120.88070 * 231.16009 * 16 15 14 18 18 O 1.21285 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00219 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47605 * 180.02562 * 19 17 16 21 21 C 1.53009 * 109.46710 * 64.99714 * 20 19 17 22 22 C 1.52993 * 109.47246 * 184.99787 * 20 19 17 23 23 C 1.47077 * 118.23607 * 51.19015 * 16 15 14 24 24 C 1.46905 * 110.99850 * 189.99944 * 13 3 2 25 25 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47434 * 299.99460 * 1 2 3 27 27 H 1.09001 * 109.47500 * 59.99906 * 1 2 3 28 28 H 1.09004 * 109.47434 * 240.00540 * 2 1 3 29 29 H 1.09001 * 109.47500 * 120.00094 * 2 1 3 30 30 H 0.97001 * 120.00737 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.49417 * 67.29540 * 14 13 3 32 32 H 1.09001 * 109.49606 * 307.20866 * 14 13 3 33 33 H 1.08995 * 109.62964 * 186.46261 * 15 14 13 34 34 H 1.09001 * 109.62912 * 65.87745 * 15 14 13 35 35 H 1.09007 * 109.47120 * 300.00117 * 19 17 16 36 36 H 1.09001 * 109.47489 * 60.00307 * 19 17 16 37 37 H 1.08994 * 109.47135 * 305.00367 * 20 19 17 38 38 H 1.08992 * 109.47085 * 300.00323 * 21 20 19 39 39 H 1.08994 * 109.46789 * 60.00440 * 21 20 19 40 40 H 1.09007 * 109.46472 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47218 * 60.00516 * 22 20 19 42 42 H 1.09003 * 109.46864 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.47475 * 299.99788 * 22 20 19 44 44 H 1.08997 * 109.63136 * 68.52186 * 23 16 15 45 45 H 1.09010 * 109.62363 * 189.10564 * 23 16 15 46 46 H 1.08999 * 109.49314 * 52.79086 * 24 13 3 47 47 H 1.09000 * 109.51378 * 292.72126 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1734 9 14 6.0048 0.8815 -1.3820 10 1 6.5549 -0.3499 -0.7603 11 1 6.3828 0.9227 -2.8174 12 1 6.5568 2.0741 -0.6903 13 7 1.6513 2.0993 1.2552 14 6 2.3278 1.4818 2.4037 15 6 1.7629 2.0694 3.7015 16 7 1.8649 3.5352 3.6339 17 6 2.4325 4.2360 4.6353 18 8 2.8680 3.6583 5.6088 19 6 2.5261 5.7373 4.5457 20 6 3.2082 6.2819 5.8024 21 6 4.6556 5.7883 5.8515 22 6 3.1917 7.8114 5.7695 23 6 1.3303 4.2158 2.4446 24 6 1.9123 3.5437 1.1964 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0608 -2.9500 31 1 3.3973 1.6846 2.3480 32 1 2.1600 0.4049 2.3889 33 1 2.3380 1.7012 4.5509 34 1 0.7177 1.7797 3.8101 35 1 3.1098 6.0132 3.6674 36 1 1.5245 6.1596 4.4636 37 1 2.6747 5.9317 6.6860 38 1 4.6673 4.6986 5.8749 39 1 5.1890 6.1385 4.9679 40 1 5.1414 6.1759 6.7471 41 1 2.1606 8.1630 5.7345 42 1 3.6773 8.1992 6.6650 43 1 3.7252 8.1616 4.8859 44 1 0.2436 4.1323 2.4324 45 1 1.6196 5.2666 2.4632 46 1 1.4433 3.9622 0.3059 47 1 2.9876 3.7181 1.1572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -45.838758 kcal Electronic energy + Delta-G solvation = -23777.503281 eV Core-core repulsion = 20573.681448 eV Total energy + Delta-G solvation = -3203.821833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.04512 -37.96880 -35.67542 -35.01820 -32.49072 -31.22778 -30.85591 -28.49211 -27.20822 -27.06411 -25.30363 -23.24934 -22.82971 -21.27978 -20.20815 -19.22983 -18.48928 -17.00531 -16.25766 -15.91318 -15.29835 -15.07795 -14.64233 -14.41731 -14.11124 -13.79555 -13.72511 -13.39847 -13.01517 -12.73111 -12.35891 -12.31477 -12.16367 -11.96379 -11.83584 -11.61137 -11.21722 -11.14193 -10.95757 -10.94289 -10.88129 -10.85780 -10.68084 -10.57301 -10.49094 -9.92845 -9.69377 -9.61320 -9.34491 -9.17293 -8.41603 -8.34066 -7.21906 -6.04499 -4.17998 2.84226 3.23241 3.24652 3.30937 3.33815 4.35353 4.62242 4.72292 4.84234 4.89402 5.18036 5.20223 5.34532 5.43262 5.48877 5.54010 5.56001 5.64672 5.66022 5.76948 5.84381 5.90317 5.92283 5.99893 6.09205 6.12149 6.31404 6.33595 6.38186 6.43679 6.47219 6.58503 6.63842 6.73768 6.81627 7.06573 7.12853 7.28551 7.53305 7.65902 7.71281 7.89886 8.07997 8.22092 8.39153 8.40962 8.91317 9.50174 10.94813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.004773 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.113160 B = 5864.539188 C = 6715.735624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.049 3.951 15 C 0.114 3.886 16 N -0.607 5.607 17 C 0.512 3.488 18 O -0.550 6.550 19 C -0.136 4.136 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.110 3.890 24 C 0.048 3.952 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 10.213 10.087 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.080 4.080 15 C -0.008 4.008 16 N -0.340 5.340 17 C 0.301 3.699 18 O -0.428 6.428 19 C -0.176 4.176 20 C -0.099 4.099 21 C -0.211 4.211 22 C -0.205 4.205 23 C -0.013 4.013 24 C -0.081 4.081 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.293 9.747 10.462 14.929 hybrid contribution 1.935 0.060 -0.537 2.009 sum -2.357 9.807 9.925 14.150 Atomic orbital electron populations 1.21702 0.98786 0.98475 1.00523 1.21606 0.92287 0.99089 1.01971 1.19293 0.93125 0.91276 0.85426 0.94299 1.21719 0.92792 1.38363 1.05511 0.92671 1.24887 0.97779 0.94955 0.95628 1.69867 1.34804 1.38158 1.09417 0.86695 0.86232 0.78447 0.77232 1.20644 1.21154 1.20144 1.62439 1.56842 1.01305 1.05069 1.22291 0.97026 0.99381 0.89325 1.21835 1.01238 0.78647 0.99107 1.48238 1.58703 1.07894 1.19185 1.20649 0.77116 0.89900 0.82232 1.90622 1.48355 1.71875 1.31986 1.21790 1.02755 0.92448 1.00634 1.20851 0.97139 0.94701 0.97162 1.21957 0.94927 1.03389 1.00786 1.21863 1.01559 0.95183 1.01867 1.21969 0.98791 0.95809 0.84730 1.22224 0.99244 0.90825 0.95844 0.95588 0.93403 0.94244 0.88927 0.94887 0.92844 0.94000 0.89951 0.89736 0.91619 0.88997 0.89197 0.90622 0.90595 0.93398 0.93194 0.92782 0.92564 0.92642 0.91083 0.90378 0.90505 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.80 37.15 0.36 -2.30 16 2 C -0.11 -2.51 5.17 -26.73 -0.14 -2.65 16 3 C 0.21 4.99 1.70 -68.86 -0.12 4.87 16 4 H 0.04 1.00 7.97 -51.92 -0.41 0.59 16 5 C -0.54 -14.01 7.26 -34.44 -0.25 -14.26 16 6 H 0.06 1.46 5.87 -52.49 -0.31 1.15 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.13 11.29 55.43 0.63 -23.51 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -10.36 4.03 -227.71 -0.92 -11.28 16 14 C 0.05 0.92 4.91 -3.70 -0.02 0.91 16 15 C 0.11 1.87 6.60 -3.59 -0.02 1.85 16 16 N -0.61 -9.28 3.01 -172.45 -0.52 -9.80 16 17 C 0.51 7.77 7.42 -10.99 -0.08 7.68 16 18 O -0.55 -9.93 13.42 5.55 0.07 -9.86 16 19 C -0.14 -1.54 3.54 -27.88 -0.10 -1.64 16 20 C -0.08 -0.88 2.57 -90.62 -0.23 -1.11 16 21 C -0.15 -1.86 8.93 37.16 0.33 -1.53 16 22 C -0.15 -1.26 9.19 37.15 0.34 -0.92 16 23 C 0.11 1.49 6.50 -3.60 -0.02 1.47 16 24 C 0.05 0.83 5.32 -3.70 -0.02 0.81 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 29 H 0.03 0.74 6.19 -51.93 -0.32 0.41 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 31 H 0.04 0.90 6.44 -51.93 -0.33 0.56 16 32 H 0.08 1.59 6.07 -51.93 -0.32 1.28 16 33 H 0.08 1.43 7.06 -51.93 -0.37 1.06 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.98 7.66 -51.92 -0.40 0.58 16 36 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 37 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 38 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.84 6.02 -51.92 -0.31 0.53 16 46 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 47 H 0.04 0.78 7.34 -51.93 -0.38 0.40 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -28.14 352.65 -8.86 -37.00 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.36 Total: 1.38 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.06 Total: -5.06 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.81 Total: -44.58 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.14 -8.86 -37.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.844 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds