Wall clock time and date at job start Tue Mar 31 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46904 * 109.47141 * 295.00132 * 3 2 1 14 14 C 1.46898 * 111.00073 * 299.30125 * 13 3 2 15 15 C 1.53236 * 109.34266 * 172.74724 * 14 13 3 16 16 N 1.47081 * 108.51936 * 53.82715 * 15 14 13 17 17 C 1.34779 * 120.87854 * 128.79842 * 16 15 14 18 18 O 1.21280 * 120.00104 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99734 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47333 * 64.99760 * 20 19 17 22 22 C 1.52999 * 109.47335 * 185.00607 * 20 19 17 23 23 C 1.47075 * 118.24126 * 308.81519 * 16 15 14 24 24 C 1.46904 * 110.99876 * 175.00152 * 13 3 2 25 25 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.49038 * 292.71098 * 14 13 3 32 32 H 1.08998 * 109.49058 * 52.78434 * 14 13 3 33 33 H 1.09003 * 109.62674 * 294.12341 * 15 14 13 34 34 H 1.08992 * 109.62928 * 173.54189 * 15 14 13 35 35 H 1.08994 * 109.47651 * 300.00457 * 19 17 16 36 36 H 1.09000 * 109.47269 * 60.00462 * 19 17 16 37 37 H 1.09006 * 109.46892 * 305.00269 * 20 19 17 38 38 H 1.08996 * 109.47341 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47184 * 300.00450 * 21 20 19 40 40 H 1.09002 * 109.46379 * 60.00018 * 21 20 19 41 41 H 1.08993 * 109.47132 * 59.99698 * 22 20 19 42 42 H 1.08998 * 109.46743 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.46489 * 299.99446 * 22 20 19 44 44 H 1.08999 * 109.63155 * 291.47723 * 23 16 15 45 45 H 1.08998 * 109.62888 * 170.89271 * 23 16 15 46 46 H 1.08997 * 109.48971 * 307.21057 * 24 13 3 47 47 H 1.08994 * 109.49103 * 67.26764 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 7 1.6513 2.0993 -1.2552 14 6 2.2339 1.4083 -2.4133 15 6 1.6628 2.0084 -3.7024 16 7 1.8756 3.4635 -3.6747 17 6 2.4540 4.0979 -4.7136 18 8 2.6221 5.2984 -4.6736 19 6 2.8917 3.3157 -5.9250 20 6 3.5134 4.2672 -6.9493 21 6 4.7954 4.8709 -6.3723 22 6 3.8438 3.4949 -8.2281 23 6 1.4408 4.2078 -2.4830 24 6 2.0207 3.5211 -1.2418 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.8292 -0.0558 2.9526 31 1 3.3169 1.5315 -2.4033 32 1 1.9876 0.3476 -2.3656 33 1 0.5955 1.7956 -3.7639 34 1 2.1748 1.5798 -4.5639 35 1 3.6288 2.5694 -5.6288 36 1 2.0288 2.8182 -6.3677 37 1 2.8074 5.0653 -7.1791 38 1 5.2380 5.5491 -7.1018 39 1 4.5599 5.4212 -5.4613 40 1 5.5013 4.0728 -6.1425 41 1 2.9305 3.0649 -8.6391 42 1 4.2862 4.1729 -8.9579 43 1 4.5498 2.6969 -7.9983 44 1 0.3522 4.2063 -2.4273 45 1 1.8060 5.2332 -2.5383 46 1 1.6198 3.9925 -0.3446 47 1 3.1066 3.6148 -1.2477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:57 Heat of formation + Delta-G solvation = -45.494160 kcal Electronic energy + Delta-G solvation = -23805.187322 eV Core-core repulsion = 20601.380432 eV Total energy + Delta-G solvation = -3203.806890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.04614 -37.98593 -35.68951 -34.99044 -32.51318 -31.45794 -30.54935 -28.60871 -27.19542 -27.05599 -25.27386 -23.26709 -22.83991 -21.34393 -20.07867 -19.31500 -18.46927 -17.00498 -16.23722 -15.92217 -15.36659 -15.07405 -14.63231 -14.40673 -14.03902 -13.85326 -13.73590 -13.47973 -12.99997 -12.65733 -12.38897 -12.30932 -12.14341 -11.94992 -11.87369 -11.54602 -11.27487 -11.13986 -10.99558 -10.90447 -10.86539 -10.83986 -10.67854 -10.61276 -10.53536 -9.95523 -9.72440 -9.50101 -9.40215 -9.18661 -8.41993 -8.34082 -7.22308 -6.04913 -4.18373 2.84327 3.21687 3.24776 3.30990 3.34293 4.34981 4.62766 4.72762 4.84829 4.90195 5.18420 5.19629 5.35062 5.43820 5.50283 5.54479 5.56329 5.65696 5.66320 5.76818 5.84688 5.89640 5.92247 5.99758 6.09201 6.12454 6.28838 6.32107 6.38085 6.43898 6.47377 6.61095 6.61499 6.71969 6.79990 7.03125 7.12831 7.24717 7.53487 7.65791 7.69748 7.89805 8.07378 8.22185 8.37883 8.40812 8.91143 9.49773 10.94347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.004812 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.187642 B = 5817.879943 C = 6567.301875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.040 0.960 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.532 5.532 14 C 0.045 3.955 15 C 0.109 3.891 16 N -0.607 5.607 17 C 0.513 3.487 18 O -0.550 6.550 19 C -0.136 4.136 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.116 3.884 24 C 0.051 3.949 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.261 0.739 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 2.375 -14.550 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.058 0.942 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.256 5.256 14 C -0.085 4.085 15 C -0.014 4.014 16 N -0.340 5.340 17 C 0.301 3.699 18 O -0.429 6.429 19 C -0.176 4.176 20 C -0.098 4.098 21 C -0.211 4.211 22 C -0.205 4.205 23 C -0.007 4.007 24 C -0.079 4.079 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.276 2.881 -14.375 15.023 hybrid contribution 1.979 -0.226 0.393 2.031 sum -1.297 2.656 -13.982 14.291 Atomic orbital electron populations 1.21711 0.98745 0.98462 1.00629 1.21638 0.92317 0.99122 1.02001 1.19301 0.93141 0.91171 0.85595 0.94185 1.21744 0.92782 1.38282 1.05462 0.92689 1.24893 0.97789 0.94954 0.95654 1.69878 1.34715 1.38357 1.09277 0.86642 0.86231 0.77723 0.78032 1.20022 1.20965 1.20962 1.62443 1.57911 1.01011 1.04277 1.22312 0.97647 0.98919 0.89586 1.22005 1.01225 0.79131 0.99078 1.48239 1.59658 1.08737 1.17383 1.20652 0.77052 0.88035 0.84138 1.90619 1.56057 1.14982 1.81219 1.21790 1.02127 0.99353 0.94362 1.20853 0.98060 0.97210 0.93726 1.21956 0.96212 1.00657 1.02230 1.21864 1.01369 1.00208 0.97036 1.21793 0.99086 0.95990 0.83816 1.22217 0.98901 0.90584 0.96151 0.95568 0.94163 0.93413 0.94813 0.88913 0.92898 0.94062 0.89740 0.91151 0.90430 0.88990 0.89193 0.90626 0.93193 0.90600 0.93398 0.92778 0.92563 0.92639 0.91553 0.89684 0.90570 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.27 16 2 C -0.11 -2.49 5.06 -26.73 -0.14 -2.63 16 3 C 0.21 4.97 1.74 -68.86 -0.12 4.84 16 4 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 5 C -0.54 -13.95 7.22 -34.44 -0.25 -14.20 16 6 H 0.05 1.45 5.86 -52.49 -0.31 1.14 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.11 11.31 55.43 0.63 -23.48 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.36 4.07 -227.73 -0.93 -11.29 16 14 C 0.04 0.78 4.94 -3.70 -0.02 0.76 16 15 C 0.11 1.50 6.50 -3.60 -0.02 1.48 16 16 N -0.61 -9.30 3.01 -172.47 -0.52 -9.82 16 17 C 0.51 7.78 7.42 -10.98 -0.08 7.70 16 18 O -0.55 -9.92 13.42 5.56 0.07 -9.84 16 19 C -0.14 -1.55 3.54 -27.88 -0.10 -1.65 16 20 C -0.08 -0.88 2.57 -90.62 -0.23 -1.11 16 21 C -0.15 -1.86 8.93 37.16 0.33 -1.53 16 22 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 23 C 0.12 1.87 6.60 -3.60 -0.02 1.85 16 24 C 0.05 0.95 5.25 -3.70 -0.02 0.93 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 28 H 0.03 0.72 6.03 -51.93 -0.31 0.41 16 29 H 0.09 2.35 5.96 -51.93 -0.31 2.04 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.04 0.82 6.69 -51.93 -0.35 0.47 16 32 H 0.08 1.47 5.87 -51.93 -0.31 1.17 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.86 6.02 -51.93 -0.31 0.55 16 35 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 36 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 37 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.41 7.06 -51.93 -0.37 1.05 16 46 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 47 H 0.04 0.86 7.02 -51.93 -0.36 0.49 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -28.08 352.26 -8.86 -36.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.34 Total: 1.43 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.06 Total: -5.01 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.82 Total: -44.58 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.08 -8.86 -36.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.559 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds