Wall clock time and date at job start Tue Mar 31 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47486 * 2 1 4 4 H 1.08998 * 109.46650 * 56.28049 * 3 2 1 5 5 C 1.50697 * 109.47535 * 176.28661 * 3 2 1 6 6 H 1.07994 * 120.00131 * 120.00322 * 5 3 2 7 7 C 1.37882 * 119.99915 * 300.00001 * 5 3 2 8 8 N 1.31520 * 119.99717 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46657 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47255 * 119.99978 * 9 7 5 12 12 H 1.48498 * 109.47091 * 240.00439 * 9 7 5 13 13 N 1.46904 * 109.46815 * 296.28773 * 3 2 1 14 14 C 1.47013 * 110.99491 * 175.69204 * 13 3 2 15 15 C 1.53100 * 109.25747 * 182.39159 * 14 13 3 16 16 O 1.43020 * 109.29103 * 303.17467 * 15 14 13 17 17 C 1.43015 * 113.74049 * 58.59861 * 16 15 14 18 18 H 1.09005 * 109.50250 * 61.35310 * 17 16 15 19 19 C 1.52999 * 109.51147 * 181.44260 * 17 16 15 20 20 N 1.46897 * 109.46958 * 299.91511 * 19 17 16 21 21 C 1.48535 * 111.00393 * 52.59913 * 20 19 17 22 22 C 1.54934 * 103.22939 * 159.71923 * 21 20 19 23 23 C 1.54597 * 102.92308 * 322.58816 * 22 21 20 24 24 C 1.47901 * 111.00069 * 169.99713 * 20 19 17 25 25 C 1.47012 * 111.00100 * 299.32255 * 13 3 2 26 26 H 1.09003 * 109.47152 * 185.06553 * 1 2 3 27 27 H 1.09006 * 109.47069 * 305.06327 * 1 2 3 28 28 H 1.09005 * 109.47358 * 65.06138 * 1 2 3 29 29 H 1.08999 * 109.47186 * 240.00205 * 2 1 3 30 30 H 1.09000 * 109.47404 * 120.00345 * 2 1 3 31 31 H 0.97002 * 119.99578 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.51227 * 302.32454 * 14 13 3 33 33 H 1.09000 * 109.50974 * 62.46148 * 14 13 3 34 34 H 1.08998 * 109.50739 * 63.08576 * 15 14 13 35 35 H 1.08996 * 109.50980 * 183.21815 * 15 14 13 36 36 H 1.08997 * 109.47133 * 179.91232 * 19 17 16 37 37 H 1.08999 * 109.47013 * 59.91010 * 19 17 16 38 38 H 1.08998 * 110.67137 * 278.15858 * 21 20 19 39 39 H 1.08999 * 110.66253 * 41.28673 * 21 20 19 40 40 H 1.09000 * 110.72516 * 204.23078 * 22 21 20 41 41 H 1.09003 * 110.72415 * 80.94788 * 22 21 20 42 42 H 1.08998 * 110.31095 * 263.03735 * 23 22 21 43 43 H 1.08998 * 110.30711 * 140.86984 * 23 22 21 44 44 H 1.09000 * 109.91598 * 333.50706 * 24 20 19 45 45 H 1.09002 * 109.91743 * 94.79930 * 24 20 19 46 46 H 1.09006 * 109.50399 * 57.67655 * 25 13 3 47 47 H 1.09000 * 109.50741 * 297.55144 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9752 0.8548 5 6 3.5442 1.4435 0.0920 6 1 4.1329 1.8939 -0.6933 7 6 4.1688 0.8694 1.1790 8 7 3.4517 0.3204 2.1351 9 14 6.0332 0.8712 1.2935 10 1 6.6018 1.5451 0.0986 11 1 6.4532 1.5974 2.5187 12 1 6.5268 -0.5281 1.3537 13 7 1.6249 2.1086 -1.2418 14 6 2.0096 3.5275 -1.2324 15 6 1.5068 4.1955 -2.5150 16 8 2.0331 3.4992 -3.6480 17 6 1.6782 2.1144 -3.6886 18 1 0.5941 2.0182 -3.7489 19 6 2.3182 1.4586 -4.9139 20 7 1.8352 2.1217 -6.1325 21 6 2.0263 3.5924 -6.0498 22 6 1.9778 4.0401 -7.5322 23 6 2.7060 2.8899 -8.2648 24 6 2.6047 1.6810 -7.3162 25 6 2.1828 1.4254 -2.4180 26 1 -0.3634 -1.0237 0.0907 27 1 -0.3633 0.5904 0.8412 28 1 -0.3634 0.4333 -0.9319 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8911 -0.0831 2.9000 32 1 1.5650 4.0195 -0.3674 33 1 3.0953 3.6100 -1.1807 34 1 0.4177 4.1604 -2.5407 35 1 1.8388 5.2333 -2.5391 36 1 2.0486 0.4029 -4.9434 37 1 3.4022 1.5552 -4.8531 38 1 1.2186 4.0540 -5.4818 39 1 2.9938 3.8302 -5.6076 40 1 2.5095 4.9818 -7.6683 41 1 0.9469 4.1249 -7.8760 42 1 3.7505 3.1509 -8.4348 43 1 2.2111 2.6708 -9.2110 44 1 3.6020 1.3622 -7.0131 45 1 2.0850 0.8617 -7.8129 46 1 1.8644 0.3829 -2.4183 47 1 3.2712 1.4742 -2.3851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:07 Heat of formation + Delta-G solvation = -36.491066 kcal Electronic energy + Delta-G solvation = -24109.595050 eV Core-core repulsion = 20906.178564 eV Total energy + Delta-G solvation = -3203.416486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.60615 -38.23440 -35.96919 -33.04915 -32.61089 -31.25331 -30.02632 -28.72309 -27.64652 -25.92869 -24.37926 -23.08336 -22.05280 -20.78387 -20.67075 -20.04815 -19.00286 -16.49081 -16.33622 -16.03100 -15.60885 -15.27399 -14.56189 -14.39496 -14.07795 -13.92435 -13.47176 -13.28566 -13.21467 -12.78912 -12.66439 -12.17618 -12.03495 -11.54771 -11.45979 -11.39339 -11.23574 -11.18259 -10.94664 -10.84964 -10.73437 -10.67806 -10.62691 -10.51836 -10.28035 -9.74816 -9.69474 -9.51240 -9.20426 -8.82191 -8.40259 -8.28864 -7.19659 -6.02740 -4.15932 3.22612 3.31614 3.35064 4.07779 4.13691 4.36437 4.67783 4.75145 4.92770 4.99602 5.21202 5.34807 5.40647 5.48303 5.55962 5.61758 5.74642 5.75701 5.80374 5.82746 5.86355 5.89453 5.95918 6.09292 6.12947 6.17126 6.25946 6.32057 6.36935 6.43033 6.54607 6.65479 6.69188 6.79555 7.01670 7.05069 7.14927 7.16481 7.27769 7.56455 7.61899 7.71964 7.90317 8.10495 8.24805 8.40348 8.93478 9.51709 10.96580 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.004682 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.932247 B = 5978.875061 C = 6372.465990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.040 0.960 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.026 3.974 15 C 0.063 3.937 16 O -0.383 6.383 17 C 0.094 3.906 18 H 0.066 0.934 19 C 0.057 3.943 20 N -0.518 5.518 21 C 0.052 3.948 22 C -0.131 4.131 23 C -0.130 4.130 24 C 0.034 3.966 25 C 0.034 3.966 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 4.560 -14.804 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.103 4.103 15 C -0.014 4.014 16 O -0.303 6.303 17 C 0.036 3.964 18 H 0.084 0.916 19 C -0.072 4.072 20 N -0.243 5.243 21 C -0.076 4.076 22 C -0.169 4.169 23 C -0.168 4.168 24 C -0.094 4.094 25 C -0.096 4.096 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.345 4.378 -14.825 16.057 hybrid contribution 2.793 -0.027 0.677 2.874 sum -1.552 4.351 -14.148 14.884 Atomic orbital electron populations 1.21698 0.98743 0.98444 1.00535 1.21623 0.92288 0.99114 1.02051 1.19309 0.92962 0.91075 0.85898 0.94262 1.21745 0.92729 1.37724 1.05957 0.92588 1.24898 0.97872 0.94993 0.95586 1.69884 1.34810 1.37969 1.09639 0.86634 0.86251 0.77748 0.77954 1.20003 1.20978 1.20964 1.62712 1.57830 1.01001 1.03922 1.22516 0.99698 0.91147 0.96929 1.22642 0.97709 0.95205 0.85806 1.88043 1.76354 1.21625 1.44244 1.22172 0.98834 0.81659 0.93706 0.91635 1.22324 0.97758 0.98486 0.88633 1.64822 1.51881 1.05416 1.02165 1.23266 1.02054 0.87628 0.94606 1.22597 1.00632 0.97502 0.96146 1.22381 1.00432 0.95352 0.98673 1.22869 0.96500 0.97942 0.92131 1.22511 0.98638 0.98586 0.89823 0.95534 0.94121 0.93625 0.94845 0.88897 0.92924 0.91045 0.93621 0.93276 0.89765 0.89482 0.94077 0.89085 0.92947 0.91535 0.91222 0.91871 0.91421 0.93970 0.90694 0.90356 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.73 37.15 0.36 -2.38 16 2 C -0.11 -2.61 5.01 -26.73 -0.13 -2.74 16 3 C 0.21 5.15 1.77 -68.86 -0.12 5.03 16 4 H 0.04 1.06 8.13 -51.93 -0.42 0.64 16 5 C -0.54 -14.28 7.11 -34.44 -0.24 -14.52 16 6 H 0.06 1.51 5.79 -52.49 -0.30 1.21 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.53 11.30 55.43 0.63 -23.90 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -10.94 4.21 -227.72 -0.96 -11.89 16 14 C 0.03 0.50 5.37 -3.71 -0.02 0.48 16 15 C 0.06 0.99 7.01 37.21 0.26 1.25 16 16 O -0.38 -6.29 6.33 -35.23 -0.22 -6.52 16 17 C 0.09 1.55 2.89 -26.68 -0.08 1.47 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.06 0.83 4.92 -3.83 -0.02 0.81 16 20 N -0.52 -7.04 5.40 -230.46 -1.24 -8.29 16 21 C 0.05 0.68 4.65 -1.90 -0.01 0.67 16 22 C -0.13 -1.38 7.06 -24.87 -0.18 -1.56 16 23 C -0.13 -1.29 6.93 -25.37 -0.18 -1.46 16 24 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 25 C 0.03 0.65 4.27 -3.71 -0.02 0.63 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.87 7.86 -51.93 -0.41 0.46 16 29 H 0.03 0.76 6.18 -51.93 -0.32 0.44 16 30 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.97 6.82 -51.93 -0.35 0.62 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.63 7.81 -51.93 -0.41 0.23 16 38 H 0.09 1.28 6.84 -51.93 -0.36 0.93 16 39 H 0.05 0.77 7.23 -51.93 -0.38 0.39 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.49 7.57 -51.93 -0.39 0.09 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.52 6.13 -51.93 -0.32 1.20 16 47 H 0.05 0.99 6.51 -51.93 -0.34 0.65 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -27.14 345.64 -10.61 -37.75 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.51 Total: 1.84 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.48 Total: -10.20 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -1.58 Total: -44.09 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.22 Total: -6.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.14 -10.61 -37.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.260 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds