Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47105 * 2 1 4 4 H 1.09003 * 109.46913 * 302.38502 * 3 2 1 5 5 C 1.50702 * 109.47197 * 182.38885 * 3 2 1 6 6 H 1.07996 * 120.00102 * 240.00431 * 5 3 2 7 7 C 1.37875 * 119.99825 * 59.99451 * 5 3 2 8 8 N 1.31519 * 120.00444 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99956 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46861 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47086 * 120.00024 * 9 7 5 12 12 H 1.48494 * 109.47206 * 240.00267 * 9 7 5 13 13 N 1.46900 * 109.47512 * 62.38527 * 3 2 1 14 14 C 1.47013 * 110.99789 * 60.25214 * 13 3 2 15 15 C 1.53093 * 109.25772 * 182.39431 * 14 13 3 16 16 O 1.43017 * 109.25904 * 303.14872 * 15 14 13 17 17 C 1.43020 * 113.73407 * 58.67408 * 16 15 14 18 18 H 1.09004 * 109.50534 * 61.26023 * 17 16 15 19 19 C 1.53002 * 109.50511 * 181.34887 * 17 16 15 20 20 N 1.46894 * 109.47169 * 299.91382 * 19 17 16 21 21 C 1.48535 * 111.00293 * 52.60190 * 20 19 17 22 22 C 1.54935 * 103.22938 * 159.72173 * 21 20 19 23 23 C 1.54600 * 102.91860 * 322.58774 * 22 21 20 24 24 C 1.47900 * 110.99933 * 169.99878 * 20 19 17 25 25 C 1.47007 * 111.00175 * 183.88877 * 13 3 2 26 26 H 1.09000 * 109.47406 * 174.71207 * 1 2 3 27 27 H 1.09002 * 109.47102 * 294.70580 * 1 2 3 28 28 H 1.09003 * 109.47317 * 54.70354 * 1 2 3 29 29 H 1.09001 * 109.46499 * 239.99600 * 2 1 3 30 30 H 1.09001 * 109.46982 * 120.00064 * 2 1 3 31 31 H 0.96999 * 120.00276 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.50439 * 62.46008 * 14 13 3 33 33 H 1.09003 * 109.51109 * 302.33041 * 14 13 3 34 34 H 1.09004 * 109.50746 * 183.21955 * 15 14 13 35 35 H 1.08994 * 109.51123 * 63.08963 * 15 14 13 36 36 H 1.09002 * 109.46829 * 59.91006 * 19 17 16 37 37 H 1.08996 * 109.46791 * 179.91028 * 19 17 16 38 38 H 1.08995 * 110.66758 * 278.15900 * 21 20 19 39 39 H 1.09000 * 110.66389 * 41.28883 * 21 20 19 40 40 H 1.08995 * 110.72541 * 204.23130 * 22 21 20 41 41 H 1.08994 * 110.72384 * 80.94268 * 22 21 20 42 42 H 1.09007 * 110.30593 * 263.03597 * 23 22 21 43 43 H 1.09003 * 110.30611 * 140.87843 * 23 22 21 44 44 H 1.08996 * 109.91579 * 333.50689 * 24 20 19 45 45 H 1.09001 * 109.91704 * 94.80303 * 24 20 19 46 46 H 1.09001 * 109.51036 * 57.67562 * 25 13 3 47 47 H 1.08999 * 109.50641 * 297.54374 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6421 1.9685 -0.8679 5 6 3.5459 1.4429 -0.0592 6 1 4.1174 1.8993 0.7353 7 6 4.1939 0.8604 -1.1277 8 7 3.4979 0.3048 -2.0956 9 14 6.0605 0.8603 -1.2008 10 1 6.6029 1.5427 0.0014 11 1 6.5542 -0.5396 -1.2398 12 1 6.5081 1.5772 -2.4217 13 7 1.5980 2.1182 1.2272 14 6 2.1218 1.4383 2.4208 15 6 1.5897 2.1376 3.6745 16 8 1.9550 3.5197 3.6347 17 6 1.4608 4.2129 2.4854 18 1 0.3711 4.1844 2.4840 19 6 1.9339 5.6674 2.5235 20 7 1.4260 6.3159 3.7398 21 6 1.7696 5.5239 4.9485 22 6 1.6503 6.5582 6.0959 23 6 2.1999 7.8524 5.4530 24 6 2.0524 7.6414 3.9348 25 6 1.9915 3.5346 1.2197 26 1 -0.3634 -1.0233 -0.0947 27 1 -0.3633 0.4295 0.9336 28 1 -0.3634 0.5938 -0.8388 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9539 -0.1053 -2.8471 32 1 3.2110 1.4804 2.4151 33 1 1.7971 0.3977 2.4189 34 1 2.0207 1.6727 4.5612 35 1 0.5039 2.0489 3.7076 36 1 3.0236 5.6951 2.5250 37 1 1.5582 6.1947 1.6466 38 1 1.0593 4.7093 5.0895 39 1 2.7877 5.1405 4.8805 40 1 2.2616 6.2612 6.9480 41 1 0.6095 6.6868 6.3925 42 1 3.2488 7.9894 5.7159 43 1 1.6131 8.7130 5.7743 44 1 3.0333 7.6620 3.4600 45 1 1.4158 8.4187 3.5120 46 1 1.5718 4.0244 0.3410 47 1 3.0786 3.6102 1.1948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -36.532503 kcal Electronic energy + Delta-G solvation = -24032.831967 eV Core-core repulsion = 20829.413683 eV Total energy + Delta-G solvation = -3203.418283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60324 -38.24690 -35.98021 -33.04848 -32.59955 -31.23397 -30.02933 -28.71110 -27.74042 -25.95234 -24.26392 -22.84740 -22.34725 -20.87953 -20.71853 -19.94196 -18.95575 -16.44764 -16.36552 -16.00151 -15.57579 -15.39149 -14.56354 -14.37515 -14.13131 -13.86037 -13.48341 -13.29241 -13.19912 -12.78766 -12.67581 -12.28439 -11.95469 -11.59597 -11.43296 -11.34384 -11.27166 -11.18295 -10.92344 -10.84028 -10.78759 -10.63757 -10.61678 -10.52291 -10.29066 -9.76801 -9.70297 -9.52476 -9.19695 -8.81783 -8.40446 -8.29499 -7.19622 -6.02741 -4.15867 3.22639 3.31650 3.35107 4.07039 4.13516 4.36467 4.67158 4.74737 4.92316 4.99577 5.21625 5.34560 5.40302 5.47607 5.55574 5.61755 5.74123 5.75647 5.80129 5.82742 5.86946 5.89150 5.95294 6.08879 6.12174 6.17886 6.25590 6.32663 6.35124 6.41984 6.54645 6.64898 6.69224 6.79853 7.01023 7.04352 7.14805 7.15550 7.27568 7.56225 7.61968 7.71808 7.90271 8.10536 8.24788 8.40019 8.93492 9.51807 10.96679 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.004653 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.812342 B = 6015.869853 C = 6707.379833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.023 3.977 15 C 0.062 3.938 16 O -0.383 6.383 17 C 0.095 3.905 18 H 0.066 0.934 19 C 0.057 3.943 20 N -0.519 5.519 21 C 0.052 3.948 22 C -0.131 4.131 23 C -0.130 4.130 24 C 0.034 3.966 25 C 0.036 3.964 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 9.341 12.023 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.105 4.105 15 C -0.015 4.015 16 O -0.303 6.303 17 C 0.037 3.963 18 H 0.084 0.916 19 C -0.072 4.072 20 N -0.243 5.243 21 C -0.076 4.076 22 C -0.169 4.169 23 C -0.168 4.168 24 C -0.094 4.094 25 C -0.093 4.093 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.996 9.352 11.914 15.949 hybrid contribution 2.826 -0.291 -0.465 2.879 sum -2.170 9.061 11.449 14.761 Atomic orbital electron populations 1.21699 0.98753 0.98403 1.00565 1.21618 0.92236 0.99089 1.02070 1.19306 0.92748 0.90962 0.86238 0.94277 1.21743 0.92655 1.37361 1.06401 0.92584 1.24896 0.97935 0.95001 0.95501 1.69880 1.34906 1.37633 1.09899 0.86637 0.86276 0.77756 0.77929 1.19998 1.20964 1.20984 1.62709 1.58134 1.00784 1.03809 1.22585 0.98847 0.98655 0.90440 1.22669 0.98995 0.81867 0.97957 1.88044 1.77435 1.21851 1.42927 1.22146 0.98129 0.89997 0.85997 0.91583 1.22325 0.98082 0.93191 0.93612 1.64821 1.54513 1.02331 1.02624 1.23268 1.01089 0.95321 0.87879 1.22597 1.01195 0.95086 0.98004 1.22383 1.00868 0.98566 0.95026 1.22867 0.97728 0.92778 0.96061 1.22440 0.99447 0.91098 0.96350 0.95565 0.93635 0.94096 0.88943 0.94821 0.92922 0.93612 0.90408 0.89817 0.93313 0.94058 0.89471 0.89078 0.92937 0.91530 0.91221 0.91868 0.91419 0.93965 0.90694 0.90999 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.71 37.16 0.36 -2.37 16 2 C -0.11 -2.59 4.96 -26.73 -0.13 -2.72 16 3 C 0.21 5.15 1.79 -68.87 -0.12 5.02 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -14.28 7.11 -34.44 -0.24 -14.52 16 6 H 0.06 1.51 5.79 -52.49 -0.30 1.21 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.54 11.30 55.43 0.63 -23.91 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -10.92 4.16 -227.72 -0.95 -11.87 16 14 C 0.02 0.45 4.98 -3.71 -0.02 0.43 16 15 C 0.06 0.98 7.01 37.21 0.26 1.24 16 16 O -0.38 -6.29 6.32 -35.23 -0.22 -6.51 16 17 C 0.10 1.55 2.89 -26.68 -0.08 1.48 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.06 0.82 4.92 -3.83 -0.02 0.80 16 20 N -0.52 -7.00 5.40 -230.46 -1.24 -8.24 16 21 C 0.05 0.68 4.65 -1.90 -0.01 0.67 16 22 C -0.13 -1.38 7.06 -24.87 -0.18 -1.55 16 23 C -0.13 -1.28 6.93 -25.37 -0.18 -1.46 16 24 C 0.03 0.38 6.69 -2.76 -0.02 0.37 16 25 C 0.04 0.69 4.65 -3.71 -0.02 0.68 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.86 7.83 -51.93 -0.41 0.46 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 30 H 0.03 0.76 6.23 -51.93 -0.32 0.44 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.05 0.99 6.54 -51.92 -0.34 0.65 16 33 H 0.08 1.49 6.14 -51.93 -0.32 1.17 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.28 6.84 -51.93 -0.36 0.93 16 39 H 0.05 0.77 7.23 -51.93 -0.38 0.39 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.04 0.48 7.57 -51.93 -0.39 0.09 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.05 0.98 6.79 -51.93 -0.35 0.63 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -27.13 345.62 -10.60 -37.73 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.52 Total: 1.78 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.48 Total: -10.18 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -1.57 Total: -44.02 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.22 Total: -6.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.13 -10.60 -37.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.199 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds