Wall clock time and date at job start Tue Mar 31 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 H 1.08990 * 109.47318 * 305.84592 * 3 2 1 5 5 C 1.50696 * 109.47033 * 65.84999 * 3 2 1 6 6 H 1.08003 * 120.00221 * 84.45007 * 5 3 2 7 7 C 1.37876 * 120.00201 * 264.45415 * 5 3 2 8 8 N 1.31509 * 120.00320 * 168.79021 * 7 5 3 9 9 Si 1.86800 * 119.99644 * 348.79030 * 7 5 3 10 10 H 1.48500 * 109.47680 * 88.70266 * 9 7 5 11 11 H 1.48500 * 109.47385 * 208.70484 * 9 7 5 12 12 H 1.48508 * 109.47272 * 328.70113 * 9 7 5 13 13 N 1.46901 * 109.46872 * 185.84708 * 3 2 1 14 14 C 1.47018 * 111.00207 * 71.72147 * 13 3 2 15 15 C 1.53097 * 109.25651 * 177.60441 * 14 13 3 16 16 O 1.43015 * 109.25959 * 56.85344 * 15 14 13 17 17 C 1.43015 * 113.73418 * 301.32572 * 16 15 14 18 18 H 1.09010 * 109.50664 * 298.73524 * 17 16 15 19 19 C 1.52999 * 109.50379 * 178.65206 * 17 16 15 20 20 N 1.46898 * 109.47535 * 65.00077 * 19 17 16 21 21 C 1.48535 * 111.00216 * 52.59895 * 20 19 17 22 22 C 1.54934 * 103.22608 * 159.72253 * 21 20 19 23 23 C 1.54591 * 102.92304 * 322.58773 * 22 21 20 24 24 C 1.47893 * 111.00483 * 170.00040 * 20 19 17 25 25 C 1.47012 * 111.00388 * 308.08411 * 13 3 2 26 26 H 1.09005 * 109.47425 * 60.30142 * 1 2 3 27 27 H 1.09004 * 109.47374 * 180.30505 * 1 2 3 28 28 H 1.09003 * 109.47039 * 300.30408 * 1 2 3 29 29 H 1.09000 * 109.47335 * 120.00531 * 2 1 3 30 30 H 1.09004 * 109.47371 * 240.00476 * 2 1 3 31 31 H 0.97004 * 119.99757 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.50353 * 297.54197 * 14 13 3 33 33 H 1.09000 * 109.50090 * 57.67201 * 14 13 3 34 34 H 1.09010 * 109.49894 * 176.78603 * 15 14 13 35 35 H 1.09000 * 109.50664 * 296.86425 * 15 14 13 36 36 H 1.09007 * 109.46981 * 184.99709 * 19 17 16 37 37 H 1.09001 * 109.46949 * 304.99588 * 19 17 16 38 38 H 1.09001 * 110.66709 * 278.16252 * 21 20 19 39 39 H 1.09001 * 110.66210 * 41.28893 * 21 20 19 40 40 H 1.09001 * 110.72116 * 204.22867 * 22 21 20 41 41 H 1.08997 * 110.72346 * 80.95106 * 22 21 20 42 42 H 1.08998 * 110.31234 * 263.04079 * 23 22 21 43 43 H 1.09001 * 110.30522 * 140.87386 * 23 22 21 44 44 H 1.09004 * 109.91506 * 333.50809 * 24 20 19 45 45 H 1.09003 * 109.92100 * 94.79596 * 24 20 19 46 46 H 1.09002 * 109.50862 * 302.32939 * 25 13 3 47 47 H 1.08997 * 109.50534 * 62.45915 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5937 1.9857 -0.8329 5 6 1.6593 2.1099 1.2964 6 1 2.2837 1.9896 2.1694 7 6 0.5139 2.8740 1.3682 8 7 0.0617 3.2728 2.5369 9 14 -0.3956 3.3426 -0.1947 10 1 -1.3856 2.2868 -0.5269 11 1 -1.0992 4.6341 0.0104 12 1 0.5752 3.4796 -1.3102 13 7 3.5021 1.4449 -0.1411 14 6 3.9007 1.0597 -1.5028 15 6 5.4252 1.1331 -1.6224 16 8 6.0175 0.2939 -0.6273 17 6 5.6512 0.6412 0.7108 18 1 5.9855 1.6558 0.9280 19 6 6.3083 -0.3338 1.6897 20 7 7.7677 -0.1755 1.6332 21 6 8.1568 1.2453 1.8236 22 6 9.6412 1.1512 2.2574 23 6 9.6607 -0.1092 3.1521 24 6 8.4247 -0.9235 2.7269 25 6 4.1290 0.5630 0.8542 26 1 -0.3634 0.5092 -0.8927 27 1 -0.3634 -1.0277 0.0055 28 1 -0.3633 0.5186 0.8873 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 -0.7440 3.8107 2.5873 32 1 3.5683 0.0415 -1.7050 33 1 3.4460 1.7414 -2.2216 34 1 5.7293 0.7937 -2.6127 35 1 5.7529 2.1620 -1.4739 36 1 5.9590 -0.1242 2.7008 37 1 6.0428 -1.3555 1.4181 38 1 8.0633 1.7983 0.8889 39 1 7.5556 1.7071 2.6068 40 1 9.9331 2.0334 2.8272 41 1 10.2887 1.0191 1.3906 42 1 9.5857 0.1713 4.2027 43 1 10.5705 -0.6834 2.9770 44 1 7.7406 -1.0272 3.5691 45 1 8.7322 -1.9071 2.3717 46 1 3.8409 0.8819 1.8559 47 1 3.8002 -0.4631 0.6896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:14 Heat of formation + Delta-G solvation = -31.782996 kcal Electronic energy + Delta-G solvation = -23889.971539 eV Core-core repulsion = 20686.759210 eV Total energy + Delta-G solvation = -3203.212329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64942 -38.46801 -36.20132 -33.13213 -32.74101 -31.43700 -30.22735 -28.89690 -27.92807 -25.93504 -24.70884 -23.04206 -22.43565 -21.20711 -20.79850 -19.99859 -18.77230 -17.08773 -16.23379 -15.95431 -15.80936 -15.56644 -14.51253 -14.39028 -14.02397 -13.95579 -13.68426 -13.53979 -13.43908 -13.27650 -12.81494 -12.64020 -12.23474 -11.85415 -11.71254 -11.46027 -11.33950 -11.20947 -11.13876 -11.05892 -10.91087 -10.73106 -10.63611 -10.57085 -10.23782 -10.05201 -9.80468 -9.64885 -9.11530 -8.98236 -8.47814 -8.33526 -7.33121 -6.11904 -4.08196 3.25571 3.35414 3.36157 3.94371 4.11732 4.38128 4.54558 4.64982 4.71995 4.89955 5.24069 5.25423 5.26838 5.34696 5.45128 5.48834 5.56509 5.61939 5.66837 5.69275 5.71270 5.77318 5.82733 5.94396 5.95881 5.97153 6.02808 6.07512 6.10852 6.13478 6.24324 6.29990 6.43156 6.47701 6.61915 6.70225 6.87245 6.92915 7.06309 7.13105 7.16606 7.56935 7.62467 7.92259 8.03701 8.58948 8.93298 9.51454 11.00706 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.004380 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.943909 B = 6390.967807 C = 6728.803206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.176 3.824 4 H 0.047 0.953 5 C -0.492 4.492 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.896 5.896 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.266 1.266 13 N -0.519 5.519 14 C 0.010 3.990 15 C 0.067 3.933 16 O -0.373 6.373 17 C 0.095 3.905 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.508 5.508 21 C 0.032 3.968 22 C -0.123 4.123 23 C -0.131 4.131 24 C 0.033 3.967 25 C 0.032 3.968 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.237 -6.231 -2.730 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C 0.070 3.930 4 H 0.065 0.935 5 C -0.530 4.530 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.534 5.534 9 Si 0.696 3.304 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.191 1.191 13 N -0.243 5.243 14 C -0.119 4.119 15 C -0.011 4.011 16 O -0.291 6.291 17 C 0.036 3.964 18 H 0.082 0.918 19 C -0.073 4.073 20 N -0.232 5.232 21 C -0.095 4.095 22 C -0.161 4.161 23 C -0.169 4.169 24 C -0.095 4.095 25 C -0.097 4.097 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.535 -5.989 -3.101 16.023 hybrid contribution -1.523 0.002 -0.118 1.528 sum 13.012 -5.987 -3.219 14.680 Atomic orbital electron populations 1.21780 0.96515 0.99564 1.02313 1.22264 0.96285 1.00904 0.98948 1.20000 0.82491 0.91927 0.98630 0.93493 1.20779 1.07688 1.29737 0.94793 0.90621 1.24928 0.96610 0.95341 0.95550 1.69911 1.22903 1.37131 1.23470 0.87124 0.80202 0.78139 0.84979 1.19630 1.21873 1.19106 1.62727 1.11321 1.49669 1.00590 1.22807 0.96115 0.99351 0.93657 1.22581 0.92110 0.94789 0.91586 1.87991 1.70330 1.56327 1.14482 1.22247 0.93814 0.97555 0.82754 0.91809 1.22298 0.87203 1.00644 0.97124 1.64794 1.07742 1.07729 1.42913 1.23265 0.95027 0.90448 1.00787 1.22472 0.96741 0.97412 0.99513 1.22391 0.98240 0.96800 0.99442 1.22894 0.95436 0.98413 0.92763 1.22615 0.92574 0.95578 0.98896 0.94301 0.94697 0.90691 0.92569 0.95248 0.92624 0.94756 0.90753 0.89483 0.92964 0.93015 0.89984 0.89799 0.93613 0.91238 0.90858 0.91664 0.91226 0.93838 0.90522 0.89136 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.33 37.15 0.31 -2.67 16 2 C -0.14 -3.02 4.47 -26.73 -0.12 -3.13 16 3 C 0.18 4.05 1.77 -68.86 -0.12 3.93 16 4 H 0.05 1.13 4.77 -51.93 -0.25 0.89 16 5 C -0.49 -13.18 8.14 -34.44 -0.28 -13.46 16 6 H 0.08 2.21 6.70 -52.48 -0.35 1.86 16 7 C 0.08 2.16 4.56 -17.82 -0.08 2.08 16 8 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 9 Si 0.87 21.03 24.74 -169.99 -4.21 16.82 16 10 H -0.27 -6.28 6.27 56.52 0.35 -5.93 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.31 6.36 56.52 0.36 -5.95 16 13 N -0.52 -10.74 4.65 -227.72 -1.06 -11.80 16 14 C 0.01 0.17 5.41 -3.71 -0.02 0.15 16 15 C 0.07 1.03 7.01 37.21 0.26 1.29 16 16 O -0.37 -6.32 10.42 -35.23 -0.37 -6.68 16 17 C 0.09 1.56 2.52 -26.68 -0.07 1.49 16 18 H 0.06 1.09 6.53 -51.92 -0.34 0.75 16 19 C 0.06 0.80 4.70 -3.83 -0.02 0.78 16 20 N -0.51 -6.78 5.34 -230.46 -1.23 -8.02 16 21 C 0.03 0.40 5.09 -1.90 -0.01 0.39 16 22 C -0.12 -1.22 7.06 -24.87 -0.18 -1.40 16 23 C -0.13 -1.21 6.93 -25.38 -0.18 -1.39 16 24 C 0.03 0.36 6.69 -2.76 -0.02 0.34 16 25 C 0.03 0.61 4.07 -3.71 -0.02 0.60 16 26 H 0.04 0.79 6.51 -51.93 -0.34 0.45 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.74 6.18 -51.93 -0.32 1.42 16 29 H 0.06 1.19 6.74 -51.93 -0.35 0.84 16 30 H 0.03 0.57 6.60 -51.93 -0.34 0.22 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.03 0.61 6.68 -51.93 -0.35 0.26 16 33 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.71 7.81 -51.93 -0.41 0.31 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.10 7.56 -51.93 -0.39 0.71 16 39 H 0.05 0.58 8.01 -51.93 -0.42 0.16 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.47 7.57 -51.93 -0.39 0.07 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.86 6.53 -51.93 -0.34 1.52 16 47 H 0.04 0.68 6.49 -51.93 -0.34 0.34 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -29.12 339.93 -9.87 -38.99 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.37 Total: 2.23 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.53 Total: -11.01 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -1.52 Total: -45.48 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.37 Total: -6.68 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.21 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.12 -9.87 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.207 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds