Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 H 1.09002 * 109.47009 * 303.35165 * 3 2 1 5 5 C 1.50695 * 109.46976 * 183.34751 * 3 2 1 6 6 H 1.08000 * 120.00468 * 239.99624 * 5 3 2 7 7 C 1.37881 * 119.99959 * 60.00842 * 5 3 2 8 8 N 1.31517 * 119.99700 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00236 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47279 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47591 * 119.99466 * 9 7 5 12 12 H 1.48502 * 109.47379 * 239.99502 * 9 7 5 13 13 N 1.46902 * 109.46967 * 63.34880 * 3 2 1 14 14 C 1.47012 * 110.99856 * 189.52684 * 13 3 2 15 15 C 1.53104 * 109.25615 * 177.60953 * 14 13 3 16 16 O 1.43012 * 109.25949 * 56.85341 * 15 14 13 17 17 C 1.43017 * 113.73342 * 301.32801 * 16 15 14 18 18 H 1.08991 * 109.51053 * 298.73433 * 17 16 15 19 19 C 1.53003 * 109.53887 * 178.62602 * 17 16 15 20 20 N 1.46897 * 109.47172 * 65.11096 * 19 17 16 21 21 C 1.48533 * 111.00182 * 52.60090 * 20 19 17 22 22 C 1.54939 * 103.22570 * 159.72251 * 21 20 19 23 23 C 1.54591 * 102.92406 * 322.58814 * 22 21 20 24 24 C 1.47895 * 111.00292 * 169.99951 * 20 19 17 25 25 C 1.47015 * 110.99967 * 65.89715 * 13 3 2 26 26 H 1.09002 * 109.46676 * 184.74815 * 1 2 3 27 27 H 1.08999 * 109.46954 * 304.74201 * 1 2 3 28 28 H 1.08997 * 109.46984 * 64.74424 * 1 2 3 29 29 H 1.08999 * 109.46690 * 240.00208 * 2 1 3 30 30 H 1.08993 * 109.47199 * 120.00375 * 2 1 3 31 31 H 0.97007 * 119.99622 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.51380 * 297.54591 * 14 13 3 33 33 H 1.09000 * 109.50319 * 57.67935 * 14 13 3 34 34 H 1.08997 * 109.50150 * 176.78611 * 15 14 13 35 35 H 1.08999 * 109.50326 * 296.87295 * 15 14 13 36 36 H 1.08997 * 109.47261 * 185.10738 * 19 17 16 37 37 H 1.08999 * 109.47574 * 305.10870 * 19 17 16 38 38 H 1.08994 * 110.66610 * 278.15712 * 21 20 19 39 39 H 1.09002 * 110.66400 * 41.28923 * 21 20 19 40 40 H 1.09000 * 110.71830 * 204.22692 * 22 21 20 41 41 H 1.08999 * 110.72620 * 80.94733 * 22 21 20 42 42 H 1.09006 * 110.30941 * 263.04495 * 23 22 21 43 43 H 1.08991 * 110.30911 * 140.87529 * 23 22 21 44 44 H 1.08996 * 109.91950 * 333.50868 * 24 20 19 45 45 H 1.09006 * 109.91969 * 94.79874 * 24 20 19 46 46 H 1.09001 * 109.50688 * 62.45554 * 25 13 3 47 47 H 1.09006 * 109.53946 * 302.34781 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9734 -0.8584 5 6 3.5447 1.4433 -0.0830 6 1 4.1288 1.8954 0.7050 7 6 4.1758 0.8670 -1.1650 8 7 3.4645 0.3162 -2.1243 9 14 6.0409 0.8686 -1.2682 10 1 6.6024 1.5460 -0.0718 11 1 6.5349 -0.5308 -1.3226 12 1 6.4683 1.5923 -2.4925 13 7 1.6175 2.1112 1.2379 14 6 1.8907 3.5544 1.1767 15 6 1.3820 4.2194 2.4585 16 8 2.0000 3.5989 3.5891 17 6 1.7540 2.1930 3.6801 18 1 0.6833 2.0167 3.7820 19 6 2.4838 1.6236 4.8984 20 7 1.9105 2.1955 6.1240 21 6 0.4355 2.0229 6.1526 22 6 0.0898 2.1751 7.6552 23 6 1.2785 1.4778 8.3558 24 6 2.4213 1.4977 7.3238 25 6 2.2665 1.5075 2.4108 26 1 -0.3633 -1.0242 0.0851 27 1 -0.3633 0.5856 0.8445 28 1 -0.3633 0.4385 -0.9294 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9086 -0.0896 -2.8854 32 1 2.9643 3.7181 1.0831 33 1 1.3798 3.9853 0.3156 34 1 1.6334 5.2799 2.4427 35 1 0.3003 4.1026 2.5244 36 1 2.3707 0.5397 4.9158 37 1 3.5421 1.8776 4.8395 38 1 -0.0541 2.7993 5.5647 39 1 0.1570 1.0327 5.7921 40 1 -0.8466 1.6685 7.8887 41 1 0.0405 3.2274 7.9351 42 1 1.0175 0.4508 8.6114 43 1 1.5669 2.0295 9.2504 44 1 2.7073 0.4779 7.0667 45 1 3.2785 2.0354 7.7294 46 1 3.3461 1.6384 2.3369 47 1 2.0307 0.4440 2.4508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = -38.015207 kcal Electronic energy + Delta-G solvation = -23971.464069 eV Core-core repulsion = 20767.981490 eV Total energy + Delta-G solvation = -3203.482578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.52722 -38.35668 -35.92362 -33.07547 -32.58318 -31.23422 -30.08315 -28.89038 -27.57836 -25.85467 -24.50168 -23.00786 -22.27415 -20.95538 -20.72293 -19.73700 -19.03874 -16.53507 -16.22727 -15.82257 -15.73645 -15.52783 -14.58310 -14.34184 -14.06330 -13.93220 -13.51134 -13.42088 -13.16068 -12.76701 -12.71178 -12.23870 -11.97239 -11.62440 -11.52851 -11.44170 -11.27700 -11.19620 -11.09348 -10.92995 -10.74485 -10.67379 -10.64463 -10.54904 -10.27126 -9.75301 -9.68791 -9.49658 -9.19594 -8.81522 -8.39824 -8.31706 -7.19064 -6.02207 -4.15098 3.23862 3.32861 3.36879 3.98026 4.21393 4.37604 4.57988 4.65852 4.85527 4.98518 5.21914 5.23504 5.34593 5.42003 5.45046 5.60491 5.64566 5.69052 5.71472 5.75029 5.81918 5.85285 5.94051 5.96330 6.05337 6.10506 6.15528 6.22066 6.35049 6.43684 6.52511 6.64669 6.69656 6.80056 6.94774 7.05421 7.08903 7.13684 7.30077 7.55702 7.71544 7.74284 7.90590 8.11022 8.24531 8.41345 8.94356 9.52628 10.97400 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.004557 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.558797 B = 6143.040500 C = 6454.245085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.025 3.975 15 C 0.065 3.935 16 O -0.372 6.372 17 C 0.096 3.904 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.507 5.507 21 C 0.034 3.966 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.033 3.967 25 C 0.032 3.968 26 H 0.025 0.975 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 2.093 15.117 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.255 5.255 14 C -0.104 4.104 15 C -0.012 4.012 16 O -0.291 6.291 17 C 0.037 3.963 18 H 0.075 0.925 19 C -0.073 4.073 20 N -0.231 5.231 21 C -0.094 4.094 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.095 4.095 25 C -0.097 4.097 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.100 2.583 15.108 16.496 hybrid contribution 1.688 -1.017 -0.651 2.076 sum -4.411 1.565 14.457 15.196 Atomic orbital electron populations 1.21725 0.98871 0.98501 1.00582 1.21584 0.92191 0.99120 1.01923 1.19291 0.92984 0.91108 0.85901 0.94323 1.21763 0.92676 1.37626 1.06135 0.92410 1.24901 0.97942 0.94992 0.95529 1.69886 1.34857 1.37900 1.09724 0.86629 0.86196 0.77729 0.78015 1.19888 1.20989 1.20988 1.62695 1.56850 1.01579 1.04417 1.22549 1.00155 0.90703 0.97034 1.22636 0.96475 0.96312 0.85771 1.87990 1.74740 1.20613 1.45768 1.22224 0.98233 0.82090 0.93732 0.92478 1.22307 1.00344 0.96091 0.88531 1.64790 1.04533 1.52437 1.01379 1.23247 0.89305 1.00298 0.96557 1.22476 0.97535 1.01243 0.94897 1.22391 0.95408 1.00596 0.98462 1.22897 0.98179 0.97116 0.91332 1.22538 0.98440 0.98829 0.89904 0.95605 0.93237 0.94274 0.88939 0.95029 0.92942 0.93619 0.91032 0.89644 0.93545 0.93311 0.89824 0.89822 0.93870 0.91315 0.90817 0.91742 0.91208 0.93908 0.90483 0.93149 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.42 16 2 C -0.11 -2.56 5.12 -26.73 -0.14 -2.69 16 3 C 0.21 5.16 1.73 -68.87 -0.12 5.05 16 4 H 0.04 1.04 8.05 -51.93 -0.42 0.62 16 5 C -0.54 -14.35 7.15 -34.44 -0.25 -14.60 16 6 H 0.06 1.56 5.79 -52.49 -0.30 1.26 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.60 11.30 55.43 0.63 -23.97 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -11.06 3.98 -227.72 -0.91 -11.96 16 14 C 0.02 0.48 5.42 -3.71 -0.02 0.46 16 15 C 0.07 1.08 7.01 37.21 0.26 1.34 16 16 O -0.37 -6.69 10.42 -35.23 -0.37 -7.06 16 17 C 0.10 1.60 2.52 -26.68 -0.07 1.53 16 18 H 0.06 0.95 6.52 -51.93 -0.34 0.61 16 19 C 0.06 0.82 4.70 -3.82 -0.02 0.81 16 20 N -0.51 -6.89 5.35 -230.46 -1.23 -8.13 16 21 C 0.03 0.41 5.09 -1.90 -0.01 0.40 16 22 C -0.12 -1.20 7.06 -24.87 -0.18 -1.37 16 23 C -0.13 -1.20 6.93 -25.38 -0.18 -1.38 16 24 C 0.03 0.37 6.69 -2.76 -0.02 0.35 16 25 C 0.03 0.63 4.28 -3.71 -0.02 0.61 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 30 H 0.03 0.72 6.35 -51.93 -0.33 0.39 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 0.99 7.17 -51.93 -0.37 0.61 16 33 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.67 7.81 -51.93 -0.41 0.27 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.08 7.56 -51.93 -0.39 0.69 16 39 H 0.04 0.52 8.01 -51.93 -0.42 0.10 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 1.11 6.23 -51.93 -0.32 0.78 16 47 H 0.07 1.47 6.30 -51.93 -0.33 1.14 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -27.89 349.50 -10.61 -38.50 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.51 Total: 1.47 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.47 Total: -10.16 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -1.51 Total: -44.06 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.37 Total: -7.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.89 -10.61 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.487 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds