Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47193 * 2 1 4 4 H 1.08997 * 109.47258 * 303.40926 * 3 2 1 5 5 C 1.50702 * 109.47259 * 183.40561 * 3 2 1 6 6 H 1.08004 * 119.99908 * 303.63890 * 5 3 2 7 7 C 1.37877 * 120.00033 * 123.63322 * 5 3 2 8 8 N 1.31514 * 120.00212 * 172.72167 * 7 5 3 9 9 Si 1.86801 * 120.00062 * 352.72812 * 7 5 3 10 10 H 1.48497 * 109.47429 * 86.12063 * 9 7 5 11 11 H 1.48501 * 109.46998 * 206.12699 * 9 7 5 12 12 H 1.48501 * 109.47033 * 326.12431 * 9 7 5 13 13 N 1.46904 * 109.47095 * 63.40650 * 3 2 1 14 14 C 1.47952 * 110.99906 * 177.31307 * 13 3 2 15 15 C 1.53937 * 86.17881 * 222.41967 * 14 13 3 16 16 N 1.46902 * 113.73628 * 138.08148 * 15 14 13 17 17 C 1.47015 * 111.00094 * 65.24539 * 16 15 14 18 18 C 1.53096 * 109.26027 * 182.39517 * 17 16 15 19 19 H 1.08999 * 109.50542 * 183.21410 * 18 17 16 20 20 C 1.52997 * 109.50749 * 63.08344 * 18 17 16 21 21 O 1.43016 * 109.25709 * 303.14837 * 18 17 16 22 22 C 1.43018 * 113.73830 * 58.66986 * 21 18 17 23 23 H 1.08995 * 109.54151 * 61.28322 * 22 21 18 24 24 C 1.52997 * 109.51070 * 181.39452 * 22 21 18 25 25 C 1.47008 * 111.00076 * 188.87639 * 16 15 14 26 26 C 1.48192 * 111.06883 * 77.87937 * 13 3 2 27 27 H 1.09004 * 109.47054 * 60.00033 * 1 2 3 28 28 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46956 * 300.00182 * 1 2 3 30 30 H 1.09009 * 109.47101 * 240.00433 * 2 1 3 31 31 H 1.08997 * 109.47185 * 120.00346 * 2 1 3 32 32 H 0.97001 * 120.00416 * 180.02562 * 8 7 5 33 33 H 1.09003 * 113.76190 * 108.10162 * 14 13 3 34 34 H 1.09003 * 113.86544 * 336.74269 * 14 13 3 35 35 H 1.09002 * 113.73115 * 269.25387 * 15 14 13 36 36 H 1.09008 * 109.50352 * 302.33053 * 17 16 15 37 37 H 1.09004 * 109.51071 * 62.45563 * 17 16 15 38 38 H 1.09001 * 109.47364 * 60.00354 * 20 18 17 39 39 H 1.08998 * 109.47359 * 179.97438 * 20 18 17 40 40 H 1.09000 * 109.47240 * 300.00350 * 20 18 17 41 41 H 1.08994 * 109.47510 * 179.78401 * 24 22 21 42 42 H 1.09004 * 109.46740 * 299.78726 * 24 22 21 43 43 H 1.09002 * 109.46499 * 59.77954 * 24 22 21 44 44 H 1.08998 * 109.51403 * 297.54128 * 25 16 15 45 45 H 1.09003 * 109.50227 * 57.63053 * 25 16 15 46 46 H 1.08997 * 113.75744 * 23.23913 * 26 13 3 47 47 H 1.09000 * 113.81993 * 251.81230 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9737 -0.8578 5 6 3.5447 1.4433 -0.0844 6 1 4.1272 0.9102 0.6524 7 6 4.1777 2.1246 -1.1023 8 7 5.4871 2.2465 -1.0972 9 14 3.1753 2.8747 -2.4887 10 1 2.7168 4.2300 -2.0910 11 1 4.0156 2.9747 -3.7091 12 1 1.9967 2.0157 -2.7683 13 7 1.6187 2.1108 1.2385 14 6 2.1490 3.4905 1.3032 15 6 2.4583 3.1923 2.7814 16 7 3.7639 3.6980 3.2260 17 6 3.8007 5.1672 3.1877 18 6 5.1942 5.6485 3.6003 19 1 5.2095 6.7380 3.6285 20 6 6.2276 5.1482 2.5890 21 8 5.5066 5.1327 4.8971 22 6 5.4807 3.7046 4.9703 23 1 6.2252 3.2911 4.2902 24 6 5.7929 3.2606 6.4008 25 6 4.0899 3.2038 4.5716 26 6 2.4737 1.7065 2.3794 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.9325 2.7262 -1.8131 33 1 1.3902 4.2599 1.1599 34 1 3.0374 3.6507 0.6924 35 1 1.6474 3.4547 3.4609 36 1 3.5815 5.5106 2.1766 37 1 3.0581 5.5681 3.8778 38 1 5.9868 5.5385 1.6001 39 1 7.2195 5.4915 2.8829 40 1 6.2127 4.0586 2.5630 41 1 5.7692 2.1724 6.4568 42 1 6.7831 3.6176 6.6840 43 1 5.0488 3.6758 7.0806 44 1 3.3521 3.5732 5.2838 45 1 4.0813 2.1138 4.5709 46 1 3.4572 1.3418 2.0835 47 1 1.9737 1.0530 3.0942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178000.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = -5.445840 kcal Electronic energy + Delta-G solvation = -24551.513307 eV Core-core repulsion = 21349.443043 eV Total energy + Delta-G solvation = -3202.070264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02479 -38.72812 -35.10391 -33.17102 -33.10108 -32.06264 -29.87435 -28.09423 -26.82902 -25.66007 -25.05165 -23.58053 -22.39307 -22.23155 -19.48791 -19.16013 -18.53817 -16.95774 -16.34734 -16.17115 -15.24142 -15.12033 -14.62375 -14.35268 -14.25359 -13.88741 -13.44457 -12.95711 -12.82860 -12.57541 -12.52639 -12.28037 -12.07676 -11.96141 -11.77260 -11.58792 -11.39389 -11.35423 -11.11974 -10.86837 -10.83823 -10.70803 -10.36595 -10.16549 -9.90438 -9.82726 -9.72735 -9.49671 -9.15520 -9.10741 -8.61425 -7.87829 -7.49174 -6.14056 -4.15324 3.21933 3.31658 3.34343 3.91125 4.16388 4.34158 4.91686 5.05260 5.11868 5.14904 5.27331 5.31387 5.40306 5.42871 5.58882 5.64597 5.66858 5.74160 5.84554 5.87709 5.97628 5.99688 6.05900 6.09513 6.13330 6.22650 6.24327 6.25594 6.38546 6.39992 6.50751 6.59563 6.72067 6.80161 6.83295 6.91252 6.93316 7.10016 7.31685 7.35374 7.47015 7.55997 7.56690 7.67217 8.21281 8.44695 8.90226 9.48856 10.97321 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.006298 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.792775 B = 4444.979567 C = 5238.214041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C 0.139 3.861 4 H 0.044 0.956 5 C -0.532 4.532 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.885 5.885 9 Si 0.866 3.134 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.488 5.488 14 C 0.020 3.980 15 C 0.049 3.951 16 N -0.510 5.510 17 C 0.028 3.972 18 C 0.092 3.908 19 H 0.097 0.903 20 C -0.172 4.172 21 O -0.384 6.384 22 C 0.085 3.915 23 H 0.072 0.928 24 C -0.142 4.142 25 C 0.029 3.971 26 C 0.022 3.978 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 3.811 9.922 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C 0.032 3.968 4 H 0.062 0.938 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.121 4.121 8 N -0.522 5.522 9 Si 0.694 3.306 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.211 5.211 14 C -0.109 4.109 15 C -0.059 4.059 16 N -0.235 5.235 17 C -0.101 4.101 18 C 0.035 3.965 19 H 0.115 0.885 20 C -0.230 4.230 21 O -0.303 6.303 22 C 0.027 3.973 23 H 0.090 0.910 24 C -0.200 4.200 25 C -0.099 4.099 26 C -0.107 4.107 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.124 0.876 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.442 3.687 9.639 10.605 hybrid contribution -0.325 0.706 -0.771 1.095 sum -2.767 4.393 8.868 10.276 Atomic orbital electron populations 1.21756 0.97840 0.99174 1.01377 1.21480 0.93412 0.98458 1.00535 1.20165 0.94856 0.91713 0.90040 0.93786 1.21349 0.89946 1.32985 1.12807 0.90158 1.25048 0.94625 0.95096 0.97290 1.69918 1.08053 1.41450 1.32804 0.87045 0.80605 0.80136 0.82780 1.20163 1.21590 1.19139 1.68824 1.44264 1.02549 1.05458 1.23788 0.99661 0.93189 0.94299 1.23604 0.88124 0.97965 0.96206 1.62447 1.30337 1.07466 1.23254 1.22677 0.96617 0.89110 1.01688 1.22230 0.93449 0.97681 0.83179 0.88483 1.22239 0.97662 1.04226 0.98854 1.87957 1.90885 1.20589 1.30883 1.22149 0.96324 0.81537 0.97279 0.90980 1.21730 1.02185 1.01129 0.94907 1.22697 0.96445 1.01022 0.89749 1.23931 0.99880 0.93319 0.93560 0.94171 0.94867 0.92314 0.92907 0.93339 0.92716 0.92466 0.88375 0.92867 0.89671 0.94980 0.91648 0.93141 0.90136 0.91053 0.91908 0.92285 0.94954 0.89858 0.87550 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.79 37.16 0.36 -2.20 16 2 C -0.10 -2.07 5.46 -26.73 -0.15 -2.21 16 3 C 0.14 3.17 1.89 -68.86 -0.13 3.04 16 4 H 0.04 1.06 4.68 -51.93 -0.24 0.82 16 5 C -0.53 -13.73 6.40 -34.44 -0.22 -13.95 16 6 H 0.08 2.28 6.36 -52.48 -0.33 1.94 16 7 C 0.08 2.25 4.87 -17.82 -0.09 2.16 16 8 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 9 Si 0.87 20.85 26.96 -169.99 -4.58 16.27 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.31 6.66 56.52 0.38 -5.93 16 13 N -0.49 -10.09 5.60 -231.64 -1.30 -11.38 16 14 C 0.02 0.40 6.60 -2.76 -0.02 0.38 16 15 C 0.05 0.88 3.33 -69.41 -0.23 0.65 16 16 N -0.51 -8.72 4.04 -227.74 -0.92 -9.64 16 17 C 0.03 0.43 4.94 -3.71 -0.02 0.41 16 18 C 0.09 1.36 3.92 -26.68 -0.10 1.26 16 19 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 20 C -0.17 -2.74 8.89 37.16 0.33 -2.41 16 21 O -0.38 -5.88 10.28 -35.23 -0.36 -6.25 16 22 C 0.08 1.21 3.02 -26.68 -0.08 1.13 16 23 H 0.07 1.12 6.49 -51.93 -0.34 0.79 16 24 C -0.14 -1.60 9.57 37.16 0.36 -1.25 16 25 C 0.03 0.44 4.87 -3.71 -0.02 0.42 16 26 C 0.02 0.43 6.50 -2.63 -0.02 0.41 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 30 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.05 0.98 7.74 -51.93 -0.40 0.58 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 2.30 6.23 -51.93 -0.32 1.98 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.37 7.42 -51.92 -0.39 0.99 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.49 6.12 -51.93 -0.32 1.17 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 46 H 0.11 2.38 5.20 -51.93 -0.27 2.11 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -27.37 349.78 -9.63 -37.00 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.49 Total: 5.44 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.02 Total: -12.16 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.44 Total: -45.58 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.36 Total: -6.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.58 Total: 16.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.37 -9.63 -37.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178000.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.553 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds