Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47314 * 2 1 4 4 H 1.08992 * 109.47038 * 54.73884 * 3 2 1 5 5 C 1.50702 * 109.47051 * 174.74258 * 3 2 1 6 6 H 1.08001 * 119.99594 * 119.99717 * 5 3 2 7 7 C 1.37871 * 120.00185 * 299.99778 * 5 3 2 8 8 N 1.31506 * 120.00436 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99693 * 0.02562 * 7 5 3 10 10 H 1.48505 * 109.46916 * 90.00093 * 9 7 5 11 11 H 1.48497 * 109.47547 * 330.00100 * 9 7 5 12 12 H 1.48504 * 109.46762 * 209.99847 * 9 7 5 13 13 N 1.46902 * 109.46899 * 294.74178 * 3 2 1 14 14 C 1.47476 * 111.00003 * 83.24292 * 13 3 2 15 15 C 1.53510 * 87.93332 * 138.70484 * 14 13 3 16 16 N 1.46904 * 114.16825 * 220.33262 * 15 14 13 17 17 C 1.47022 * 110.99777 * 162.60255 * 16 15 14 18 18 C 1.53100 * 109.25538 * 182.38745 * 17 16 15 19 19 H 1.09004 * 109.50380 * 63.13371 * 18 17 16 20 20 C 1.52993 * 109.50563 * 183.21522 * 18 17 16 21 21 O 1.43016 * 109.25981 * 303.15275 * 18 17 16 22 22 C 1.43017 * 113.73867 * 58.67101 * 21 18 17 23 23 H 1.09004 * 109.50674 * 61.26109 * 22 21 18 24 24 C 1.52995 * 109.50702 * 181.35042 * 22 21 18 25 25 C 1.47015 * 110.99947 * 286.23403 * 16 15 14 26 26 C 1.47481 * 110.99977 * 179.21446 * 13 3 2 27 27 H 1.08998 * 109.47315 * 306.57509 * 1 2 3 28 28 H 1.09010 * 109.46908 * 66.56698 * 1 2 3 29 29 H 1.08997 * 109.47576 * 186.56780 * 1 2 3 30 30 H 1.09003 * 109.47422 * 239.99612 * 2 1 3 31 31 H 1.08998 * 109.47069 * 119.99930 * 2 1 3 32 32 H 0.96998 * 120.00481 * 179.97438 * 8 7 5 33 33 H 1.09003 * 113.48010 * 253.47119 * 14 13 3 34 34 H 1.09003 * 113.47649 * 23.93266 * 14 13 3 35 35 H 1.09000 * 114.17335 * 87.62157 * 15 14 13 36 36 H 1.09001 * 109.50324 * 302.32459 * 17 16 15 37 37 H 1.08997 * 109.50629 * 62.45535 * 17 16 15 38 38 H 1.09005 * 109.47411 * 60.00278 * 20 18 17 39 39 H 1.09006 * 109.47490 * 180.02562 * 20 18 17 40 40 H 1.09001 * 109.47554 * 300.00156 * 20 18 17 41 41 H 1.09004 * 109.47375 * 59.99562 * 24 22 21 42 42 H 1.08991 * 109.47553 * 179.97438 * 24 22 21 43 43 H 1.09007 * 109.47125 * 300.00377 * 24 22 21 44 44 H 1.09003 * 109.50867 * 297.54811 * 25 16 15 45 45 H 1.09006 * 109.50427 * 57.67481 * 25 16 15 46 46 H 1.09002 * 113.47131 * 336.06623 * 26 13 3 47 47 H 1.09000 * 113.47449 * 106.46717 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 0.8391 5 6 3.5414 1.4445 0.1302 6 1 4.1499 1.8878 -0.6441 7 6 4.1381 0.8802 1.2377 8 7 5.4482 0.8823 1.3516 9 14 3.0854 0.1128 2.5765 10 1 2.8659 -1.3238 2.2710 11 1 1.7764 0.8113 2.6385 12 1 3.7772 0.2407 3.8843 13 7 1.6567 2.0974 -1.2579 14 6 0.2759 2.6105 -1.1872 15 6 0.7661 3.8706 -1.9141 16 7 0.1898 5.1218 -1.4037 17 6 0.9818 6.2821 -1.8374 18 6 0.3823 7.5559 -1.2359 19 1 0.4506 7.5122 -0.1489 20 6 1.1532 8.7743 -1.7476 21 8 -0.9898 7.6610 -1.6252 22 6 -1.7905 6.5480 -1.2184 23 1 -1.7861 6.4746 -0.1308 24 6 -3.2256 6.7437 -1.7114 25 6 -1.2131 5.2639 -1.8197 26 6 2.1164 3.4984 -1.2858 27 1 -0.3634 0.6123 0.8253 28 1 -0.3633 0.4087 -0.9430 29 1 -0.3634 -1.0209 0.1175 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8680 0.4857 2.1309 33 1 -0.4358 2.0235 -1.7679 34 1 -0.0650 2.8010 -0.1696 35 1 0.7439 3.7959 -3.0013 36 1 2.0109 6.1680 -1.4968 37 1 0.9631 6.3494 -2.9251 38 1 1.0833 8.8184 -2.8345 39 1 0.7263 9.6810 -1.3187 40 1 2.1997 8.6919 -1.4539 41 1 -3.2296 6.8155 -2.7991 42 1 -3.8352 5.8950 -1.4015 43 1 -3.6344 7.6600 -1.2854 44 1 -1.2669 5.3150 -2.9072 45 1 -1.7861 4.4067 -1.4662 46 1 2.2668 3.9259 -0.2944 47 1 2.9654 3.6637 -1.9492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -0.923514 kcal Electronic energy + Delta-G solvation = -23802.362652 eV Core-core repulsion = 20600.488490 eV Total energy + Delta-G solvation = -3201.874162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30015 -39.03570 -35.44011 -33.81762 -33.59393 -31.92244 -30.28270 -28.57435 -26.97789 -26.14635 -24.83586 -23.67890 -22.32551 -21.97786 -20.46031 -19.70955 -19.06801 -16.87287 -16.62807 -16.31531 -15.67805 -15.40755 -15.23533 -14.52490 -14.40131 -14.07967 -13.36067 -13.18396 -12.93069 -12.82515 -12.68053 -12.42467 -12.30397 -12.16941 -12.03438 -12.01520 -11.83260 -11.75828 -11.50461 -11.41207 -11.05859 -10.80316 -10.61622 -10.39094 -10.14555 -9.87211 -9.82713 -9.57627 -9.24617 -9.00261 -8.57382 -8.33656 -7.98575 -6.09856 -4.09023 3.25084 3.35635 3.37263 3.54925 3.79204 4.37501 4.52821 4.80998 4.84931 4.92789 4.98398 5.05339 5.13049 5.20927 5.27503 5.35806 5.40371 5.42486 5.48263 5.57312 5.66722 5.69888 5.79946 5.85151 5.87788 5.92922 5.95248 6.01035 6.04391 6.08303 6.09581 6.15280 6.37443 6.43140 6.51034 6.59726 6.74663 6.81646 6.97818 7.09257 7.18816 7.19692 7.36229 7.76068 7.93814 8.56570 8.95963 9.52058 11.03025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.004532 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.067083 B = 6176.777025 C = 6824.988287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C 0.158 3.842 4 H 0.008 0.992 5 C -0.509 4.509 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.297 1.297 13 N -0.456 5.456 14 C 0.011 3.989 15 C 0.035 3.965 16 N -0.525 5.525 17 C 0.025 3.975 18 C 0.090 3.910 19 H 0.066 0.934 20 C -0.143 4.143 21 O -0.383 6.383 22 C 0.090 3.910 23 H 0.065 0.935 24 C -0.143 4.143 25 C 0.026 3.974 26 C 0.038 3.962 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 11.505 -5.585 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.050 3.950 4 H 0.026 0.974 5 C -0.547 4.547 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.225 1.225 13 N -0.179 5.179 14 C -0.119 4.119 15 C -0.073 4.073 16 N -0.250 5.250 17 C -0.103 4.103 18 C 0.032 3.968 19 H 0.084 0.916 20 C -0.201 4.201 21 O -0.303 6.303 22 C 0.032 3.968 23 H 0.083 0.917 24 C -0.200 4.200 25 C -0.103 4.103 26 C -0.091 4.091 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.150 11.069 -5.559 18.806 hybrid contribution -0.490 -0.383 0.797 1.011 sum -14.640 10.686 -4.762 18.741 Atomic orbital electron populations 1.22032 0.98173 1.00049 1.01199 1.21844 0.93161 0.99493 1.01175 1.20253 0.97104 0.91059 0.86613 0.97418 1.20934 0.88722 1.38567 1.06519 0.90259 1.24916 0.94762 0.95556 0.97736 1.69876 1.08779 1.45375 1.29573 0.86896 0.80691 0.79907 0.81034 1.20459 1.19189 1.22468 1.68813 1.02360 1.11677 1.35020 1.23916 0.95164 0.93095 0.99690 1.23525 0.98234 0.88365 0.97219 1.62456 1.01491 1.01928 1.59085 1.22758 0.98818 0.90390 0.98329 1.22142 0.81545 0.94309 0.98784 0.91578 1.21740 0.99608 0.96756 1.01975 1.87944 1.19738 1.42847 1.79788 1.22120 0.90829 0.85257 0.98592 0.91683 1.21735 0.93736 1.02493 1.02083 1.22744 0.90363 0.98726 0.98421 1.23473 0.94595 0.90492 1.00581 0.93884 0.92327 0.94206 0.91499 0.93348 0.92595 0.90969 0.91265 0.91088 0.89254 0.94181 0.92001 0.91771 0.90740 0.91996 0.90960 0.91730 0.94233 0.89761 0.90512 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.84 37.16 0.33 -2.49 16 2 C -0.12 -2.62 5.11 -26.73 -0.14 -2.76 16 3 C 0.16 3.72 0.95 -68.86 -0.07 3.66 16 4 H 0.01 0.20 6.59 -51.93 -0.34 -0.14 16 5 C -0.51 -14.20 8.68 -34.44 -0.30 -14.50 16 6 H 0.08 2.42 7.71 -52.49 -0.40 2.01 16 7 C 0.07 2.08 5.45 -17.83 -0.10 1.98 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.88 21.99 24.41 -169.99 -4.15 17.84 16 10 H -0.28 -6.75 6.83 56.52 0.39 -6.36 16 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 12 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.46 -9.36 6.11 -238.01 -1.45 -10.82 16 14 C 0.01 0.18 4.86 -7.55 -0.04 0.15 16 15 C 0.03 0.54 3.44 -67.50 -0.23 0.31 16 16 N -0.52 -7.32 4.68 -225.99 -1.06 -8.38 16 17 C 0.03 0.32 4.84 -3.71 -0.02 0.31 16 18 C 0.09 1.06 3.43 -26.68 -0.09 0.97 16 19 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -1.36 9.57 37.15 0.36 -1.00 16 21 O -0.38 -4.83 10.11 -35.23 -0.36 -5.19 16 22 C 0.09 1.01 3.42 -26.69 -0.09 0.92 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 C -0.14 -1.25 9.57 37.16 0.36 -0.89 16 25 C 0.03 0.31 4.88 -3.71 -0.02 0.29 16 26 C 0.04 0.72 5.70 -7.55 -0.04 0.67 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.97 5.56 -51.92 -0.29 0.68 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.05 1.13 3.21 -51.93 -0.17 0.97 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.11 6.84 -51.93 -0.36 0.75 16 34 H 0.07 1.22 7.52 -51.93 -0.39 0.83 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 46 H 0.08 1.57 7.90 -51.93 -0.41 1.16 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -30.09 349.58 -9.75 -39.83 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.68 Total: 0.39 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.09 Total: -12.40 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.74 Total: -45.74 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.36 Total: -5.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.09 -9.75 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.910 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds