Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47201 * 2 1 4 4 H 1.08999 * 109.47592 * 304.18034 * 3 2 1 5 5 C 1.50708 * 109.46913 * 184.17928 * 3 2 1 6 6 H 1.07998 * 120.00265 * 239.99767 * 5 3 2 7 7 C 1.37883 * 119.99755 * 60.00360 * 5 3 2 8 8 N 1.31512 * 119.99891 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47298 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46937 * 119.99542 * 9 7 5 12 12 H 1.48492 * 109.47211 * 239.99635 * 9 7 5 13 13 N 1.46899 * 109.47341 * 64.18255 * 3 2 1 14 14 C 1.46853 * 111.00227 * 65.62966 * 13 3 2 15 15 C 1.53032 * 109.52569 * 185.84260 * 14 13 3 16 16 C 1.53121 * 109.27529 * 300.81821 * 15 14 13 17 17 C 1.53115 * 109.16193 * 57.65694 * 16 15 14 18 18 H 1.09003 * 109.50516 * 62.28164 * 17 16 15 19 19 N 1.46501 * 109.53862 * 182.38378 * 17 16 15 20 20 C 1.34777 * 119.99949 * 274.82502 * 19 17 16 21 21 O 1.21279 * 120.00199 * 359.97438 * 20 19 17 22 22 C 1.50695 * 120.00008 * 180.02562 * 20 19 17 23 23 C 1.53004 * 109.47128 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47125 * 299.99447 * 22 20 19 25 25 C 1.46847 * 111.00099 * 189.83758 * 13 3 2 26 26 H 1.08990 * 109.47379 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46689 * 299.99920 * 1 2 3 28 28 H 1.08999 * 109.46859 * 59.99707 * 1 2 3 29 29 H 1.08999 * 109.46859 * 120.00292 * 2 1 3 30 30 H 1.08998 * 109.46896 * 239.99801 * 2 1 3 31 31 H 0.97001 * 119.99996 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.45882 * 305.86288 * 14 13 3 33 33 H 1.09004 * 109.45978 * 65.82172 * 14 13 3 34 34 H 1.09001 * 109.50398 * 180.87863 * 15 14 13 35 35 H 1.08998 * 109.53939 * 60.77900 * 15 14 13 36 36 H 1.09002 * 109.52431 * 297.75147 * 16 15 14 37 37 H 1.09005 * 109.57551 * 177.59016 * 16 15 14 38 38 H 0.96997 * 120.00408 * 94.81777 * 19 17 16 39 39 H 1.09000 * 109.47359 * 59.99590 * 22 20 19 40 40 H 1.09000 * 109.47262 * 59.99620 * 23 22 20 41 41 H 1.09000 * 109.46844 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.46744 * 299.99415 * 23 22 20 43 43 H 1.09003 * 109.47020 * 60.00245 * 24 22 20 44 44 H 1.09000 * 109.47410 * 179.97438 * 24 22 20 45 45 H 1.09000 * 109.47119 * 300.00290 * 24 22 20 46 46 H 1.08997 * 109.46280 * 294.17589 * 25 13 3 47 47 H 1.09005 * 109.46259 * 54.14561 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6169 1.9775 -0.8501 5 6 3.5436 1.4436 -0.1036 6 1 4.1384 1.8919 0.6785 7 6 4.1597 0.8725 -1.1969 8 7 3.4354 0.3262 -2.1490 9 14 6.0233 0.8745 -1.3256 10 1 6.6011 1.5462 -0.1338 11 1 6.5163 -0.5246 -1.3934 12 1 6.4339 1.6041 -2.5520 13 7 1.6346 2.1052 1.2467 14 6 2.2940 1.4925 2.4070 15 6 1.7404 2.1081 3.6941 16 6 1.9906 3.6186 3.6801 17 6 1.3347 4.2253 2.4367 18 1 0.2570 4.0676 2.4801 19 7 1.6172 5.6618 2.3851 20 6 0.8329 6.5274 3.0575 21 8 -0.1071 6.1171 3.7049 22 6 1.1231 8.0052 3.0040 23 6 0.0912 8.7584 3.8460 24 6 2.5248 8.2700 3.5575 25 6 1.9000 3.5482 1.1860 26 1 -0.3633 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.8688 -0.0759 -2.9179 32 1 2.1049 0.4190 2.4072 33 1 3.3678 1.6718 2.3512 34 1 2.2412 1.6642 4.5545 35 1 0.6692 1.9172 3.7581 36 1 3.0634 3.8100 3.6561 37 1 1.5603 4.0684 4.5750 38 1 2.3688 5.9901 1.8672 39 1 1.0694 8.3489 1.9711 40 1 0.1445 8.4148 4.8790 41 1 0.3015 9.8272 3.8076 42 1 -0.9071 8.5698 3.4513 43 1 3.2597 7.7334 2.9573 44 1 2.7350 9.3388 3.5184 45 1 2.5785 7.9263 4.5905 46 1 2.9755 3.7179 1.1359 47 1 1.4246 3.9679 0.2994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -59.114251 kcal Electronic energy + Delta-G solvation = -23661.568032 eV Core-core repulsion = 20457.170530 eV Total energy + Delta-G solvation = -3204.397501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00998 -38.32909 -35.32014 -34.51708 -33.33493 -31.78410 -30.71980 -29.03671 -27.22202 -26.55428 -24.11707 -23.69863 -22.18904 -21.95197 -19.94939 -19.62849 -18.84600 -17.10142 -16.34822 -15.96426 -15.34890 -15.15790 -14.45594 -14.25988 -14.00001 -13.74380 -13.43135 -13.24832 -13.07962 -12.70224 -12.67557 -12.45687 -12.24843 -11.96422 -11.89598 -11.39655 -11.32502 -11.22236 -11.21509 -10.93446 -10.83006 -10.76635 -10.46147 -10.37637 -10.10573 -9.86410 -9.71824 -9.62563 -9.30059 -9.12396 -8.76481 -8.40163 -7.16553 -6.02874 -4.16545 2.76036 3.21545 3.29431 3.30867 3.32978 4.35185 4.59894 4.74260 4.81876 5.00586 5.20775 5.21486 5.29648 5.41814 5.42650 5.49047 5.55822 5.66216 5.72528 5.77106 5.92868 5.97158 6.04918 6.11108 6.22627 6.28822 6.35021 6.40138 6.48001 6.50484 6.53309 6.67156 6.75241 6.76952 6.89505 7.11989 7.18234 7.34129 7.57885 7.66390 7.73949 7.94808 8.11620 8.26914 8.37384 8.44422 8.93620 9.51241 10.96255 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.004519 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.655835 B = 6193.900133 C = 6889.263716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.123 4.123 17 C 0.145 3.855 18 H 0.090 0.910 19 N -0.722 5.722 20 C 0.515 3.485 21 O -0.543 6.543 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.144 4.144 25 C 0.061 3.939 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.039 0.961 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 11.751 8.800 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.109 3.891 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.162 4.162 17 C 0.041 3.959 18 H 0.109 0.891 19 N -0.373 5.373 20 C 0.301 3.699 21 O -0.420 6.420 22 C -0.138 4.138 23 C -0.189 4.189 24 C -0.201 4.201 25 C -0.068 4.068 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.154 11.277 9.129 14.847 hybrid contribution 2.450 0.192 -0.616 2.534 sum -0.704 11.468 8.513 14.300 Atomic orbital electron populations 1.21713 0.98805 0.98446 1.00643 1.21595 0.92281 0.99006 1.01964 1.19283 0.92973 0.91217 0.85628 0.94417 1.21770 0.92763 1.37989 1.05748 0.92498 1.24905 0.97793 0.95030 0.95636 1.69883 1.34765 1.38006 1.09565 0.86641 0.86280 0.77782 0.77883 1.20012 1.20974 1.21058 1.62313 1.57513 1.00567 1.04931 1.21958 0.96702 0.98957 0.89272 1.21596 1.01599 0.94210 0.97924 1.21885 1.00116 0.96443 0.97730 1.21087 1.01282 0.77918 0.95640 0.89149 1.46130 1.32335 1.07560 1.51265 1.20621 0.82031 0.88402 0.78813 1.90683 1.29789 1.79831 1.41719 1.21320 0.97731 0.92446 1.02345 1.21594 0.98363 0.98682 1.00238 1.21784 0.94356 1.02335 1.01657 1.21997 0.98718 0.90828 0.95270 0.95607 0.93262 0.94286 0.94815 0.88983 0.92923 0.90961 0.94360 0.92341 0.91662 0.92532 0.92409 0.76840 0.88628 0.92032 0.92294 0.91979 0.92046 0.91569 0.92119 0.94311 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.79 37.16 0.36 -2.44 16 2 C -0.11 -2.54 5.14 -26.73 -0.14 -2.68 16 3 C 0.22 5.09 1.72 -68.86 -0.12 4.97 16 4 H 0.04 1.00 7.99 -51.93 -0.41 0.58 16 5 C -0.54 -13.90 7.23 -34.43 -0.25 -14.15 16 6 H 0.06 1.47 5.84 -52.49 -0.31 1.16 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.55 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.53 -10.66 4.02 -228.07 -0.92 -11.58 16 14 C 0.06 1.12 4.78 -3.83 -0.02 1.10 16 15 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 16 C -0.12 -1.89 5.58 -26.61 -0.15 -2.04 16 17 C 0.15 2.31 2.62 -67.85 -0.18 2.13 16 18 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 19 N -0.72 -9.57 4.97 -53.73 -0.27 -9.84 16 20 C 0.52 7.05 7.12 -10.99 -0.08 6.97 16 21 O -0.54 -9.54 15.64 5.56 0.09 -9.45 16 22 C -0.12 -1.14 3.26 -91.77 -0.30 -1.44 16 23 C -0.13 -1.26 8.48 37.16 0.32 -0.94 16 24 C -0.14 -1.15 9.09 37.16 0.34 -0.81 16 25 C 0.06 1.11 4.66 -3.83 -0.02 1.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.76 6.25 -51.93 -0.32 0.44 16 30 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.07 1.41 6.13 -51.93 -0.32 1.10 16 33 H 0.04 0.78 6.38 -51.93 -0.33 0.45 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.39 8.02 -40.82 -0.33 4.06 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.04 0.74 7.28 -51.93 -0.38 0.36 16 47 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -28.49 358.32 -9.09 -37.59 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.52 Total: 4.46 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.48 Total: -8.50 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.56 Total: -44.97 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.49 -9.09 -37.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.528 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds