Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46865 * 2 1 4 4 H 1.09003 * 109.46795 * 178.09841 * 3 2 1 5 5 C 1.50700 * 109.47301 * 298.09773 * 3 2 1 6 6 H 1.08007 * 119.99676 * 119.72505 * 5 3 2 7 7 C 1.37873 * 120.00041 * 300.00274 * 5 3 2 8 8 N 1.31521 * 119.99795 * 179.72394 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 359.72425 * 7 5 3 10 10 H 1.48499 * 109.47281 * 90.00068 * 9 7 5 11 11 H 1.48501 * 109.46810 * 210.00350 * 9 7 5 12 12 H 1.48494 * 109.46998 * 329.99802 * 9 7 5 13 13 N 1.46900 * 109.47024 * 58.10209 * 3 2 1 14 14 C 1.46846 * 111.00201 * 57.86463 * 13 3 2 15 15 C 1.53038 * 109.52418 * 185.83867 * 14 13 3 16 16 C 1.53123 * 109.28022 * 300.82302 * 15 14 13 17 17 C 1.53120 * 109.15831 * 57.65464 * 16 15 14 18 18 H 1.08999 * 109.50845 * 62.28540 * 17 16 15 19 19 N 1.46497 * 109.50164 * 182.36867 * 17 16 15 20 20 C 1.34781 * 119.99919 * 274.99762 * 19 17 16 21 21 O 1.21284 * 119.99710 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00372 * 180.02562 * 20 19 17 23 23 C 1.52992 * 109.47236 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47057 * 300.00268 * 22 20 19 25 25 C 1.46849 * 110.99871 * 182.07775 * 13 3 2 26 26 H 1.08996 * 109.47084 * 305.19417 * 1 2 3 27 27 H 1.09000 * 109.47321 * 65.19685 * 1 2 3 28 28 H 1.09005 * 109.47100 * 185.19780 * 1 2 3 29 29 H 1.09000 * 109.47106 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.47380 * 120.00094 * 2 1 3 31 31 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46365 * 305.85678 * 14 13 3 33 33 H 1.08998 * 109.45726 * 65.83469 * 14 13 3 34 34 H 1.08999 * 109.49892 * 60.76506 * 15 14 13 35 35 H 1.09004 * 109.50321 * 180.84203 * 15 14 13 36 36 H 1.09000 * 109.52417 * 177.55855 * 16 15 14 37 37 H 1.08997 * 109.51916 * 297.68521 * 16 15 14 38 38 H 0.96997 * 120.00538 * 95.00276 * 19 17 16 39 39 H 1.09004 * 109.47005 * 59.99745 * 22 20 19 40 40 H 1.09004 * 109.47386 * 59.99912 * 23 22 20 41 41 H 1.09000 * 109.47238 * 180.02562 * 23 22 20 42 42 H 1.08998 * 109.47239 * 300.00141 * 23 22 20 43 43 H 1.09002 * 109.47040 * 300.00337 * 24 22 20 44 44 H 1.09000 * 109.47213 * 59.99471 * 24 22 20 45 45 H 1.08994 * 109.47295 * 179.97438 * 24 22 20 46 46 H 1.08997 * 109.46153 * 294.17532 * 25 13 3 47 47 H 1.09001 * 109.46385 * 54.14438 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0341 5 6 1.5765 2.1392 -1.2534 6 1 0.9492 3.0157 -1.1835 7 6 1.9485 1.6544 -2.4893 8 7 1.5395 2.2593 -3.5832 9 14 3.0333 0.1385 -2.6101 10 1 2.1816 -1.0766 -2.6660 11 1 3.8617 0.2194 -3.8399 12 1 3.9192 0.0678 -1.4204 13 7 1.5132 2.1481 1.1758 14 6 1.9034 1.4670 2.4169 15 6 1.2196 2.1424 3.6078 16 6 1.6341 3.6156 3.6600 17 6 1.2599 4.2900 2.3372 18 1 0.1788 4.2539 2.2032 19 7 1.7040 5.6859 2.3572 20 6 0.9228 6.6338 2.9120 21 8 -0.1481 6.3311 3.3942 22 6 1.3793 8.0698 2.9321 23 6 0.3163 8.9334 3.6139 24 6 2.6950 8.1759 3.7057 25 6 1.9427 3.5523 1.1831 26 1 -0.3633 0.5923 0.8398 27 1 -0.3634 0.4311 -0.9329 28 1 -0.3633 -1.0235 0.0931 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8015 1.9185 -4.4527 32 1 1.5992 0.4214 2.3685 33 1 2.9850 1.5253 2.5384 34 1 0.1378 2.0725 3.4938 35 1 1.5212 1.6460 4.5302 36 1 1.1156 4.1110 4.4808 37 1 2.7108 3.6857 3.8140 38 1 2.5603 5.9281 1.9711 39 1 1.5297 8.4176 1.9100 40 1 0.1662 8.5855 4.6360 41 1 0.6462 9.9721 3.6280 42 1 -0.6213 8.8579 3.0632 43 1 2.5446 7.8281 4.7277 44 1 3.4525 7.5606 3.2203 45 1 3.0254 9.2145 3.7198 46 1 3.0241 3.6007 1.3103 47 1 1.6669 4.0214 0.2386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = -46.318289 kcal Electronic energy + Delta-G solvation = -23750.360302 eV Core-core repulsion = 20546.517676 eV Total energy + Delta-G solvation = -3203.842627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.02457 -38.50529 -35.53487 -34.49624 -33.51780 -31.87773 -31.01328 -29.12412 -27.21450 -26.92376 -24.02833 -23.93598 -22.57670 -21.80981 -19.97686 -19.83994 -18.91602 -17.08873 -16.47068 -16.13226 -15.44888 -15.30310 -14.63183 -14.23818 -14.03133 -13.95886 -13.72238 -13.21562 -13.08130 -12.91581 -12.67205 -12.60561 -12.44709 -12.32735 -11.97498 -11.91989 -11.30654 -11.20287 -11.18321 -10.97327 -10.86362 -10.64129 -10.59390 -10.52326 -10.13738 -10.08866 -9.90588 -9.53586 -9.35851 -8.96427 -8.76821 -8.56425 -7.39167 -6.09848 -4.07811 2.78589 3.24157 3.28498 3.33507 3.35375 4.36669 4.59372 4.73347 4.78264 4.84230 5.16106 5.21641 5.22304 5.28469 5.36217 5.43792 5.53622 5.56243 5.68703 5.74965 5.80397 5.90385 5.97383 5.99312 6.04205 6.08661 6.12346 6.14775 6.18204 6.34145 6.36915 6.44424 6.52663 6.65290 6.68829 6.75548 6.90238 7.05015 7.11792 7.42696 7.58199 7.66889 7.90784 8.03194 8.39262 8.61702 8.96333 9.52292 11.02664 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.004589 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.377001 B = 6099.550774 C = 6788.214932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.187 3.813 4 H -0.003 1.003 5 C -0.500 4.500 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.514 5.514 14 C 0.046 3.954 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.145 3.855 18 H 0.094 0.906 19 N -0.722 5.722 20 C 0.517 3.483 21 O -0.542 6.542 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.143 4.143 25 C 0.061 3.939 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.398 0.602 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 7.190 13.924 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C 0.080 3.920 4 H 0.014 0.986 5 C -0.538 4.538 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.239 5.239 14 C -0.083 4.083 15 C -0.149 4.149 16 C -0.164 4.164 17 C 0.041 3.959 18 H 0.113 0.887 19 N -0.372 5.372 20 C 0.302 3.698 21 O -0.419 6.419 22 C -0.139 4.139 23 C -0.189 4.189 24 C -0.201 4.201 25 C -0.068 4.068 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.231 0.769 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.174 6.950 14.029 15.806 hybrid contribution 2.016 -0.845 -0.451 2.232 sum 4.190 6.105 13.578 15.466 Atomic orbital electron populations 1.21479 0.95200 0.98208 1.03446 1.21899 0.97697 0.97925 0.98368 1.19706 0.92428 0.90716 0.89133 0.98576 1.20895 1.31822 1.13454 0.87673 0.89932 1.24880 0.95627 0.96654 0.95743 1.69879 1.45467 1.40596 0.97673 0.86954 0.80935 0.84079 0.76853 1.20399 1.22533 1.19519 1.61724 1.60013 1.00568 1.01585 1.22190 0.96556 0.98957 0.90579 1.21520 1.01617 0.94493 0.97318 1.21919 1.00509 0.96181 0.97758 1.21066 1.01064 0.78940 0.94853 0.88745 1.46069 1.22604 1.08163 1.60400 1.20620 0.84291 0.87407 0.77435 1.90686 1.22421 1.82859 1.45934 1.21321 0.97537 0.92780 1.02238 1.21592 0.98049 0.97996 1.01249 1.21777 0.95262 1.02580 1.00435 1.22146 0.95795 0.90397 0.98489 0.92148 0.91623 0.95938 0.93574 0.94705 0.92642 0.90555 0.96110 0.91037 0.92112 0.92072 0.92650 0.76853 0.88479 0.92074 0.92284 0.91907 0.92183 0.92124 0.91558 0.95926 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.50 37.16 0.35 -2.22 16 2 C -0.12 -2.59 4.72 -26.73 -0.13 -2.71 16 3 C 0.19 4.24 1.35 -68.86 -0.09 4.15 16 4 H 0.00 -0.08 7.19 -51.93 -0.37 -0.45 16 5 C -0.50 -13.25 7.35 -34.44 -0.25 -13.50 16 6 H 0.08 2.40 6.81 -52.48 -0.36 2.04 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 9 Si 0.88 21.44 24.40 -169.99 -4.15 17.30 16 10 H -0.28 -6.63 6.84 56.52 0.39 -6.24 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.51 -10.02 3.58 -228.08 -0.82 -10.84 16 14 C 0.05 0.75 5.17 -3.83 -0.02 0.73 16 15 C -0.11 -1.58 6.09 -26.65 -0.16 -1.74 16 16 C -0.12 -1.78 5.58 -26.61 -0.15 -1.93 16 17 C 0.15 2.30 2.61 -67.85 -0.18 2.12 16 18 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 19 N -0.72 -9.65 4.98 -53.72 -0.27 -9.91 16 20 C 0.52 7.21 7.12 -10.98 -0.08 7.14 16 21 O -0.54 -9.69 15.65 5.55 0.09 -9.60 16 22 C -0.12 -1.18 3.26 -91.78 -0.30 -1.48 16 23 C -0.13 -1.31 8.48 37.15 0.32 -0.99 16 24 C -0.14 -1.13 9.09 37.16 0.34 -0.79 16 25 C 0.06 1.09 4.70 -3.83 -0.02 1.07 16 26 H 0.06 1.19 7.38 -51.93 -0.38 0.81 16 27 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 1.05 3.26 -51.93 -0.17 0.88 16 30 H 0.03 0.66 6.35 -51.93 -0.33 0.33 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.08 1.24 5.99 -51.93 -0.31 0.93 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 4.38 8.02 -40.82 -0.33 4.05 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 2.02 6.16 -51.93 -0.32 1.70 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -30.39 351.35 -7.96 -38.35 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.42 Total: 3.47 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.47 Total: -8.25 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.31 Total: -46.56 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.39 -7.96 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.970 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds