Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46865 * 2 1 4 4 H 1.09003 * 109.46795 * 178.09841 * 3 2 1 5 5 C 1.50700 * 109.47301 * 298.09773 * 3 2 1 6 6 H 1.08007 * 119.99676 * 119.72505 * 5 3 2 7 7 C 1.37873 * 120.00041 * 300.00274 * 5 3 2 8 8 N 1.31521 * 119.99795 * 179.72394 * 7 5 3 9 9 Si 1.86801 * 120.00068 * 359.72425 * 7 5 3 10 10 H 1.48499 * 109.47281 * 90.00068 * 9 7 5 11 11 H 1.48501 * 109.46810 * 210.00350 * 9 7 5 12 12 H 1.48494 * 109.46998 * 329.99802 * 9 7 5 13 13 N 1.46900 * 109.47024 * 58.10209 * 3 2 1 14 14 C 1.46846 * 111.00201 * 57.86463 * 13 3 2 15 15 C 1.53038 * 109.52418 * 185.83867 * 14 13 3 16 16 C 1.53123 * 109.28022 * 300.82302 * 15 14 13 17 17 C 1.53120 * 109.15831 * 57.65464 * 16 15 14 18 18 H 1.08999 * 109.50845 * 62.28540 * 17 16 15 19 19 N 1.46497 * 109.50164 * 182.36867 * 17 16 15 20 20 C 1.34781 * 119.99919 * 274.99762 * 19 17 16 21 21 O 1.21284 * 119.99710 * 359.97438 * 20 19 17 22 22 C 1.50702 * 120.00372 * 180.02562 * 20 19 17 23 23 C 1.52992 * 109.47236 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47057 * 300.00268 * 22 20 19 25 25 C 1.46849 * 110.99871 * 182.07775 * 13 3 2 26 26 H 1.08996 * 109.47084 * 305.19417 * 1 2 3 27 27 H 1.09000 * 109.47321 * 65.19685 * 1 2 3 28 28 H 1.09005 * 109.47100 * 185.19780 * 1 2 3 29 29 H 1.09000 * 109.47106 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.47380 * 120.00094 * 2 1 3 31 31 H 0.97001 * 119.99923 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46365 * 305.85678 * 14 13 3 33 33 H 1.08998 * 109.45726 * 65.83469 * 14 13 3 34 34 H 1.08999 * 109.49892 * 60.76506 * 15 14 13 35 35 H 1.09004 * 109.50321 * 180.84203 * 15 14 13 36 36 H 1.09000 * 109.52417 * 177.55855 * 16 15 14 37 37 H 1.08997 * 109.51916 * 297.68521 * 16 15 14 38 38 H 0.96997 * 120.00538 * 95.00276 * 19 17 16 39 39 H 1.09004 * 109.47005 * 59.99745 * 22 20 19 40 40 H 1.09004 * 109.47386 * 59.99912 * 23 22 20 41 41 H 1.09000 * 109.47238 * 180.02562 * 23 22 20 42 42 H 1.08998 * 109.47239 * 300.00141 * 23 22 20 43 43 H 1.09002 * 109.47040 * 300.00337 * 24 22 20 44 44 H 1.09000 * 109.47213 * 59.99471 * 24 22 20 45 45 H 1.08994 * 109.47295 * 179.97438 * 24 22 20 46 46 H 1.08997 * 109.46153 * 294.17532 * 25 13 3 47 47 H 1.09001 * 109.46385 * 54.14438 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0341 5 6 1.5765 2.1392 -1.2534 6 1 0.9492 3.0157 -1.1835 7 6 1.9485 1.6544 -2.4893 8 7 1.5395 2.2593 -3.5832 9 14 3.0333 0.1385 -2.6101 10 1 2.1816 -1.0766 -2.6660 11 1 3.8617 0.2194 -3.8399 12 1 3.9192 0.0678 -1.4204 13 7 1.5132 2.1481 1.1758 14 6 1.9034 1.4670 2.4169 15 6 1.2196 2.1424 3.6078 16 6 1.6341 3.6156 3.6600 17 6 1.2599 4.2900 2.3372 18 1 0.1788 4.2539 2.2032 19 7 1.7040 5.6859 2.3572 20 6 0.9228 6.6338 2.9120 21 8 -0.1481 6.3311 3.3942 22 6 1.3793 8.0698 2.9321 23 6 0.3163 8.9334 3.6139 24 6 2.6950 8.1759 3.7057 25 6 1.9427 3.5523 1.1831 26 1 -0.3633 0.5923 0.8398 27 1 -0.3634 0.4311 -0.9329 28 1 -0.3633 -1.0235 0.0931 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8015 1.9185 -4.4527 32 1 1.5992 0.4214 2.3685 33 1 2.9850 1.5253 2.5384 34 1 0.1378 2.0725 3.4938 35 1 1.5212 1.6460 4.5302 36 1 1.1156 4.1110 4.4808 37 1 2.7108 3.6857 3.8140 38 1 2.5603 5.9281 1.9711 39 1 1.5297 8.4176 1.9100 40 1 0.1662 8.5855 4.6360 41 1 0.6462 9.9721 3.6280 42 1 -0.6213 8.8579 3.0632 43 1 2.5446 7.8281 4.7277 44 1 3.4525 7.5606 3.2203 45 1 3.0254 9.2145 3.7198 46 1 3.0241 3.6007 1.3103 47 1 1.6669 4.0214 0.2386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -67.080959 kcal Electronic energy + Delta-G solvation = -23751.260639 eV Core-core repulsion = 20546.517676 eV Total energy + Delta-G solvation = -3204.742964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23310 -39.91646 -37.03678 -35.45021 -34.93420 -33.78035 -32.50661 -30.43678 -28.78520 -27.92299 -25.63717 -25.15532 -24.04820 -23.14598 -21.40524 -21.08677 -20.32754 -18.48088 -18.12839 -17.61440 -16.90307 -16.34929 -16.21598 -15.75213 -15.45372 -15.00897 -14.99380 -14.76012 -14.71298 -14.26289 -14.22594 -13.78662 -13.52241 -13.51348 -13.14188 -12.93631 -12.82018 -12.64116 -12.49741 -12.28719 -12.05662 -12.05168 -11.99425 -11.95730 -11.89840 -11.63909 -11.33242 -11.23505 -10.83448 -10.69394 -10.60995 -10.01991 -8.95602 -8.24783 -6.25877 1.31239 1.34658 1.44048 1.67287 2.15956 2.33180 3.09393 3.26990 3.67759 3.88155 3.93133 4.02428 4.08530 4.09867 4.22327 4.35118 4.39000 4.41538 4.51870 4.61608 4.67371 4.74933 4.77317 4.78451 4.90423 4.94002 4.97284 4.98764 5.04720 5.07821 5.11538 5.19453 5.23344 5.31016 5.32038 5.34295 5.36999 5.42576 5.53479 5.67060 5.76324 6.06387 6.39550 6.58733 6.73613 6.79899 7.28991 7.37949 8.91522 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.004589 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.377001 B = 6099.550774 C = 6788.214932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.123 4.123 3 C 0.191 3.809 4 H -0.010 1.010 5 C -0.490 4.490 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.302 1.302 12 H -0.250 1.250 13 N -0.528 5.528 14 C 0.045 3.955 15 C -0.105 4.105 16 C -0.115 4.115 17 C 0.156 3.844 18 H 0.059 0.941 19 N -0.715 5.715 20 C 0.511 3.489 21 O -0.587 6.587 22 C -0.112 4.112 23 C -0.130 4.130 24 C -0.138 4.138 25 C 0.069 3.931 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.453 6.413 16.232 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.083 3.917 4 H 0.008 0.992 5 C -0.528 4.528 6 H 0.058 0.942 7 C -0.180 4.180 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.230 1.230 12 H -0.175 1.175 13 N -0.253 5.253 14 C -0.082 4.082 15 C -0.143 4.143 16 C -0.154 4.154 17 C 0.050 3.950 18 H 0.077 0.923 19 N -0.366 5.366 20 C 0.299 3.701 21 O -0.467 6.467 22 C -0.133 4.133 23 C -0.188 4.188 24 C -0.196 4.196 25 C -0.060 4.060 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.247 0.753 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.052 0.948 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.194 6.180 16.362 17.986 hybrid contribution 1.320 -0.505 -1.148 1.821 sum 5.514 5.674 15.214 17.148 Atomic orbital electron populations 1.21378 0.94877 0.99749 1.01539 1.21881 0.97985 0.96731 0.99411 1.19522 0.91838 0.91671 0.88620 0.99243 1.21061 1.30038 1.12024 0.89710 0.94217 1.25643 0.97251 0.99733 0.95351 1.70033 1.47782 1.42792 0.98316 0.85991 0.79431 0.80607 0.77212 1.19421 1.22960 1.17451 1.61636 1.60446 1.01103 1.02110 1.22294 0.97374 0.99162 0.89409 1.21505 1.00732 0.94361 0.97716 1.21838 1.01485 0.96028 0.96058 1.20763 0.98718 0.80336 0.95153 0.92279 1.46002 1.23151 1.07275 1.60212 1.21425 0.83512 0.88938 0.76248 1.90664 1.24342 1.83752 1.47903 1.21390 0.98679 0.89569 1.03669 1.21603 0.97340 0.99646 1.00189 1.21778 0.93861 1.04276 0.99640 1.21980 0.96485 0.89922 0.97610 0.91885 0.95304 0.93010 0.94711 0.91231 0.92761 0.89822 0.95111 0.92205 0.88909 0.92315 0.90862 0.75284 0.86902 0.93156 0.89382 0.93806 0.92770 0.91255 0.89289 0.94762 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 9.50 71.98 0.68 -4.00 16 2 C -0.12 -4.95 4.72 30.60 0.14 -4.81 16 3 C 0.19 8.53 1.35 44.17 0.06 8.59 16 4 H -0.01 -0.45 7.19 -2.39 -0.02 -0.47 16 5 C -0.49 -26.80 7.35 25.60 0.19 -26.62 16 6 H 0.04 2.47 6.81 -2.91 -0.02 2.45 16 7 C 0.02 0.98 5.45 84.65 0.46 1.44 16 8 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 9 Si 0.94 44.09 24.40 68.60 1.67 45.77 16 10 H -0.27 -12.10 6.84 99.48 0.68 -11.42 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 13 N -0.53 -20.28 3.58 -875.50 -3.13 -23.42 16 14 C 0.05 1.36 5.17 86.33 0.45 1.81 16 15 C -0.10 -2.71 6.09 30.65 0.19 -2.52 16 16 C -0.12 -3.07 5.58 30.68 0.17 -2.90 16 17 C 0.16 4.94 2.61 45.05 0.12 5.06 16 18 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 19 N -0.72 -18.90 4.98 -442.27 -2.20 -21.10 16 20 C 0.51 14.22 7.12 87.66 0.62 14.85 16 21 O -0.59 -21.54 15.65 -3.04 -0.05 -21.59 16 22 C -0.11 -2.10 3.26 -11.54 -0.04 -2.13 16 23 C -0.13 -2.47 8.48 71.98 0.61 -1.86 16 24 C -0.14 -1.82 9.09 71.98 0.65 -1.17 16 25 C 0.07 2.51 4.70 86.33 0.41 2.92 16 26 H 0.06 2.43 7.38 -2.39 -0.02 2.41 16 27 H 0.03 1.32 7.46 -2.39 -0.02 1.30 16 28 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.03 1.49 3.26 -2.39 -0.01 1.49 16 30 H 0.07 2.35 6.35 -2.39 -0.02 2.33 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.08 2.40 5.99 -2.39 -0.01 2.39 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.41 8.62 8.02 -92.71 -0.74 7.88 16 39 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 2.61 6.16 -2.39 -0.01 2.60 16 Total: -1.00 -69.33 351.35 1.42 -67.91 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.11 Total: 21.84 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.72 Total: -11.34 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -5.03 Total: -102.60 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.77 kcal Total: -69.33 1.42 -67.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.828 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds