Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 H 1.09003 * 109.47417 * 184.22715 * 3 2 1 5 5 C 1.50698 * 109.47197 * 64.22319 * 3 2 1 6 6 H 1.08006 * 120.00272 * 239.99762 * 5 3 2 7 7 C 1.37878 * 120.00165 * 60.00328 * 5 3 2 8 8 N 1.31513 * 119.99502 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00358 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47027 * 59.99932 * 9 7 5 11 11 H 1.48495 * 109.47156 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46986 * 300.00020 * 9 7 5 13 13 N 1.46904 * 109.46899 * 304.22686 * 3 2 1 14 14 C 1.46902 * 110.99985 * 184.16387 * 13 3 2 15 15 C 1.53239 * 109.33918 * 187.25390 * 14 13 3 16 16 N 1.47076 * 108.51896 * 306.16502 * 15 14 13 17 17 C 1.34779 * 120.88536 * 231.18719 * 16 15 14 18 18 O 1.21276 * 120.00501 * 175.66972 * 17 16 15 19 19 C 1.50705 * 119.99292 * 355.66838 * 17 16 15 20 20 C 1.52999 * 109.46588 * 185.34878 * 19 17 16 21 21 C 1.53001 * 109.46850 * 65.35731 * 19 17 16 22 22 C 1.52998 * 109.47605 * 305.35288 * 19 17 16 23 23 C 1.47084 * 118.23740 * 51.46328 * 16 15 14 24 24 C 1.46896 * 110.99727 * 308.46190 * 13 3 2 25 25 H 1.09004 * 109.47268 * 184.57503 * 1 2 3 26 26 H 1.09004 * 109.47862 * 304.57824 * 1 2 3 27 27 H 1.09001 * 109.46998 * 64.57998 * 1 2 3 28 28 H 1.08997 * 109.47718 * 239.99726 * 2 1 3 29 29 H 1.09001 * 109.47244 * 119.99075 * 2 1 3 30 30 H 0.97005 * 119.99669 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.49669 * 67.28835 * 14 13 3 32 32 H 1.09002 * 109.48880 * 307.20856 * 14 13 3 33 33 H 1.08998 * 109.62925 * 186.45334 * 15 14 13 34 34 H 1.09002 * 109.62968 * 65.87205 * 15 14 13 35 35 H 1.09005 * 109.47199 * 60.00468 * 20 19 17 36 36 H 1.08999 * 109.47788 * 300.00170 * 20 19 17 37 37 H 1.09008 * 109.47164 * 180.02562 * 20 19 17 38 38 H 1.09002 * 109.46881 * 192.55762 * 21 19 17 39 39 H 1.09000 * 109.46916 * 312.54982 * 21 19 17 40 40 H 1.08997 * 109.47363 * 72.55539 * 21 19 17 41 41 H 1.08997 * 109.46645 * 306.97034 * 22 19 17 42 42 H 1.08994 * 109.47042 * 66.96719 * 22 19 17 43 43 H 1.08993 * 109.47011 * 186.97427 * 22 19 17 44 44 H 1.08994 * 109.63385 * 68.24927 * 23 16 15 45 45 H 1.08998 * 109.62776 * 188.83444 * 23 16 15 46 46 H 1.08999 * 109.49600 * 292.70177 * 24 13 3 47 47 H 1.09000 * 109.49906 * 52.78846 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1273 1.4435 -0.0758 5 6 1.6248 2.1221 1.2794 6 1 0.9993 3.0019 1.2453 7 6 2.0437 1.6208 2.4936 8 7 2.8059 0.5499 2.5351 9 14 1.5298 2.4635 4.0795 10 1 0.0484 2.4628 4.1829 11 1 2.1077 1.7347 5.2371 12 1 2.0253 3.8635 4.0792 13 7 1.4686 2.1638 -1.1452 14 6 2.0131 3.5253 -1.2346 15 6 1.2642 4.3008 -2.3236 16 7 1.3205 3.5253 -3.5720 17 6 1.7286 4.0956 -4.7230 18 8 1.8441 3.4230 -5.7255 19 6 2.0412 5.5693 -4.7641 20 6 2.3492 5.9852 -6.2039 21 6 3.2556 5.8578 -3.8791 22 6 0.8366 6.3608 -4.2510 23 6 0.9139 2.1123 -3.5325 24 6 1.6822 1.4214 -2.3946 25 1 -0.3634 -1.0244 0.0820 26 1 -0.3635 0.5832 0.8461 27 1 -0.3633 0.4411 -0.9282 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.1003 0.1969 3.3894 31 1 3.0727 3.4775 -1.4855 32 1 1.8881 4.0306 -0.2770 33 1 1.7377 5.2710 -2.4736 34 1 0.2250 4.4396 -2.0254 35 1 1.4841 5.7796 -6.8344 36 1 3.2074 5.4214 -6.5694 37 1 2.5758 7.0511 -6.2336 38 1 3.3479 6.9334 -3.7285 39 1 3.1276 5.3656 -2.9150 40 1 4.1560 5.4801 -4.3634 41 1 -0.0553 6.0627 -4.8021 42 1 0.6932 6.1571 -3.1900 43 1 1.0138 7.4265 -4.3958 44 1 -0.1582 2.0448 -3.3482 45 1 1.1559 1.6349 -4.4820 46 1 2.7464 1.4029 -2.6294 47 1 1.3172 0.4009 -2.2783 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -20.833545 kcal Electronic energy + Delta-G solvation = -24316.463693 eV Core-core repulsion = 21113.726168 eV Total energy + Delta-G solvation = -3202.737525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54542 -37.96076 -35.88318 -35.13225 -32.54689 -31.23215 -30.43862 -27.60810 -27.45583 -27.26519 -25.68244 -23.54641 -23.14962 -22.14537 -20.35451 -19.27375 -18.25446 -16.58269 -16.16726 -15.87931 -15.35933 -15.00237 -14.57868 -14.46836 -14.10085 -13.91585 -13.70915 -13.47356 -13.02973 -12.47869 -12.43281 -12.32879 -12.27119 -11.96604 -11.86886 -11.77918 -11.56281 -11.26931 -11.05223 -11.04230 -10.93122 -10.76355 -10.61563 -10.46240 -10.32832 -9.93979 -9.80070 -9.51314 -9.34760 -8.89318 -8.45619 -8.36014 -7.23764 -6.04424 -4.09036 2.78998 3.19216 3.28192 3.33913 3.35724 4.35983 4.40990 4.68229 4.75363 4.83680 5.09212 5.25210 5.31923 5.39367 5.43214 5.46457 5.54761 5.60109 5.67102 5.69747 5.75357 5.78174 5.85035 5.91333 6.04040 6.06504 6.12506 6.21606 6.33271 6.41307 6.47287 6.50240 6.52488 6.71751 6.76226 7.05024 7.22870 7.32895 7.58974 7.62566 7.70314 7.78466 8.11698 8.28436 8.34720 8.51931 8.95686 9.55343 11.01624 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.004780 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.725871 B = 5856.021819 C = 6524.013361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.116 4.116 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.526 5.526 14 C 0.048 3.952 15 C 0.089 3.911 16 N -0.604 5.604 17 C 0.522 3.478 18 O -0.553 6.553 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.155 4.155 23 C 0.117 3.883 24 C 0.037 3.963 25 H 0.017 0.983 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.095 0.905 30 H 0.261 0.739 31 H 0.023 0.977 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.023 0.977 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 9.505 -10.668 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.081 4.081 15 C -0.033 4.033 16 N -0.336 5.336 17 C 0.310 3.690 18 O -0.431 6.431 19 C -0.089 4.089 20 C -0.182 4.182 21 C -0.214 4.214 22 C -0.212 4.212 23 C -0.006 4.006 24 C -0.092 4.092 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.041 0.959 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.530 9.047 -10.972 14.444 hybrid contribution 0.648 0.225 0.906 1.137 sum -1.882 9.272 -10.066 13.814 Atomic orbital electron populations 1.21494 0.97205 0.97776 1.01460 1.21633 0.95108 0.98261 1.00402 1.19267 0.92095 0.90544 0.86848 0.98550 1.20979 1.30909 1.12027 0.89620 0.92046 1.24903 0.95136 0.95066 0.98981 1.69864 1.35399 1.22197 1.25648 0.86625 0.78892 0.79441 0.82821 1.20239 1.21448 1.20401 1.62096 1.59061 1.01392 1.02598 1.22348 0.95168 0.91972 0.98585 1.22628 1.01910 0.95348 0.83439 1.48167 1.64912 1.11961 1.08582 1.20553 0.76233 0.89565 0.82648 1.90639 1.53547 1.64646 1.34258 1.20749 0.97509 0.92154 0.98469 1.21639 1.02514 1.00483 0.93520 1.22199 0.96497 1.02612 1.00077 1.22228 0.96520 0.99871 1.02589 1.21858 0.99112 0.80312 0.99305 1.22575 0.97358 0.98808 0.90498 0.96437 0.92172 0.94137 0.96726 0.88716 0.92913 0.95899 0.88513 0.88020 0.90829 0.92245 0.91992 0.92234 0.91316 0.90496 0.92004 0.92260 0.90492 0.91589 0.91135 0.89690 0.95863 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.34 37.15 0.35 -2.20 16 2 C -0.12 -2.65 4.93 -26.73 -0.13 -2.79 16 3 C 0.22 5.15 1.77 -68.86 -0.12 5.03 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 5 C -0.50 -12.58 6.72 -34.44 -0.23 -12.81 16 6 H 0.06 1.55 7.02 -52.48 -0.37 1.18 16 7 C 0.06 1.58 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -24.42 11.30 55.43 0.63 -23.79 16 9 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.53 -10.40 3.76 -227.43 -0.85 -11.26 16 14 C 0.05 0.85 5.32 -3.70 -0.02 0.83 16 15 C 0.09 1.24 4.10 -3.60 -0.01 1.22 16 16 N -0.60 -9.18 2.99 -172.18 -0.52 -9.70 16 17 C 0.52 8.00 6.48 -10.98 -0.07 7.93 16 18 O -0.55 -10.24 15.44 5.56 0.09 -10.15 16 19 C -0.09 -0.99 0.75 -155.66 -0.12 -1.11 16 20 C -0.12 -1.35 7.74 37.16 0.29 -1.06 16 21 C -0.16 -1.64 8.10 37.16 0.30 -1.34 16 22 C -0.15 -1.49 8.03 37.16 0.30 -1.19 16 23 C 0.12 1.87 6.64 -3.36 -0.02 1.85 16 24 C 0.04 0.66 4.83 -3.46 -0.02 0.65 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 1.37 7.21 -51.93 -0.37 1.00 16 27 H 0.04 0.79 6.80 -51.93 -0.35 0.44 16 28 H 0.01 0.31 6.43 -51.93 -0.33 -0.03 16 29 H 0.09 2.46 5.97 -51.93 -0.31 2.15 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 32 H 0.10 1.79 6.56 -51.93 -0.34 1.45 16 33 H 0.10 1.17 2.68 -51.93 -0.14 1.03 16 34 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.08 0.87 4.86 -51.93 -0.25 0.62 16 40 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 42 H 0.08 0.72 4.72 -51.93 -0.24 0.48 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.38 7.04 -51.93 -0.37 1.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 1.60 5.24 -51.93 -0.27 1.33 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -28.56 342.67 -8.09 -36.64 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.97 Total: 1.22 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 0.39 Total: -3.51 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.74 Total: -44.74 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.56 -8.09 -36.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.809 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds