Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46770 * 2 1 4 4 H 1.08999 * 109.47033 * 55.00010 * 3 2 1 5 5 C 1.50699 * 109.47114 * 174.99822 * 3 2 1 6 6 H 1.08003 * 119.99894 * 119.99759 * 5 3 2 7 7 C 1.37877 * 120.00305 * 300.00378 * 5 3 2 8 8 N 1.31523 * 119.99558 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99978 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47186 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46993 * 120.00060 * 9 7 5 12 12 H 1.48499 * 109.46810 * 239.99708 * 9 7 5 13 13 N 1.46904 * 109.47229 * 295.00174 * 3 2 1 14 14 C 1.46901 * 110.99845 * 174.99927 * 13 3 2 15 15 C 1.53243 * 109.35780 * 187.23813 * 14 13 3 16 16 N 1.47088 * 108.51983 * 306.21162 * 15 14 13 17 17 C 1.34773 * 120.86117 * 231.19129 * 16 15 14 18 18 O 1.21273 * 120.00276 * 174.21639 * 17 16 15 19 19 C 1.50700 * 119.99935 * 354.21697 * 17 16 15 20 20 C 1.53001 * 109.47406 * 188.61532 * 19 17 16 21 21 C 1.53000 * 109.47080 * 308.61170 * 19 17 16 22 22 C 1.53001 * 109.47533 * 68.61145 * 19 17 16 23 23 C 1.47074 * 118.25483 * 51.14190 * 16 15 14 24 24 C 1.46896 * 110.99697 * 299.30349 * 13 3 2 25 25 H 1.08994 * 109.47239 * 299.99909 * 1 2 3 26 26 H 1.08994 * 109.47480 * 60.00129 * 1 2 3 27 27 H 1.09008 * 109.46721 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47039 * 240.00605 * 2 1 3 29 29 H 1.08997 * 109.46755 * 119.99751 * 2 1 3 30 30 H 0.97000 * 119.99334 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.49274 * 307.21122 * 14 13 3 32 32 H 1.09005 * 109.49127 * 67.26779 * 14 13 3 33 33 H 1.08997 * 109.62649 * 65.89501 * 15 14 13 34 34 H 1.09005 * 109.62495 * 186.47606 * 15 14 13 35 35 H 1.09000 * 109.47128 * 59.99360 * 20 19 17 36 36 H 1.08998 * 109.47278 * 180.02562 * 20 19 17 37 37 H 1.09004 * 109.46931 * 299.99884 * 20 19 17 38 38 H 1.09000 * 109.47263 * 76.14199 * 21 19 17 39 39 H 1.09001 * 109.47348 * 196.13850 * 21 19 17 40 40 H 1.08998 * 109.47320 * 316.14519 * 21 19 17 41 41 H 1.09001 * 109.47006 * 70.18899 * 22 19 17 42 42 H 1.08996 * 109.47403 * 190.19386 * 22 19 17 43 43 H 1.08998 * 109.47246 * 310.19232 * 22 19 17 44 44 H 1.09000 * 109.62583 * 189.12526 * 23 16 15 45 45 H 1.08992 * 109.63369 * 68.54578 * 23 16 15 46 46 H 1.09007 * 109.49239 * 292.70243 * 24 13 3 47 47 H 1.08998 * 109.49742 * 52.76187 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0050 0.8803 1.3811 10 1 6.5988 1.5445 0.1930 11 1 6.3999 1.6159 2.6092 12 1 6.4962 -0.5187 1.4626 13 7 1.6513 2.0993 -1.2552 14 6 2.0206 3.5211 -1.2417 15 6 1.4413 4.2082 -2.4829 16 7 1.8755 3.4635 -3.6747 17 6 2.4541 4.0979 -4.7135 18 8 2.9009 3.4583 -5.6420 19 6 2.5459 5.6021 -4.7214 20 6 3.0424 6.0757 -6.0889 21 6 1.1642 6.1988 -4.4459 22 6 3.5241 6.0591 -3.6373 23 6 1.6627 2.0085 -3.7024 24 6 2.2338 1.4083 -2.4132 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0603 2.9502 31 1 1.6197 3.9925 -0.3445 32 1 3.1066 3.6148 -1.2477 33 1 0.3527 4.2071 -2.4274 34 1 1.8069 5.2336 -2.5380 35 1 2.3456 5.7501 -6.8612 36 1 3.1093 7.1636 -6.0944 37 1 4.0268 5.6506 -6.2851 38 1 0.9339 6.1072 -3.3845 39 1 1.1600 7.2514 -4.7291 40 1 0.4144 5.6629 -5.0279 41 1 4.5395 5.7880 -3.9265 42 1 3.4563 7.1405 -3.5192 43 1 3.2733 5.5743 -2.6938 44 1 2.1747 1.5799 -4.5639 45 1 0.5956 1.7955 -3.7639 46 1 3.3169 1.5315 -2.4033 47 1 1.9880 0.3475 -2.3654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -25.538805 kcal Electronic energy + Delta-G solvation = -24399.064993 eV Core-core repulsion = 21196.123432 eV Total energy + Delta-G solvation = -3202.941561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48510 -37.92299 -35.83264 -35.05677 -32.41285 -31.25191 -30.58111 -27.66279 -27.44144 -27.25651 -25.58489 -23.38307 -23.17832 -22.05611 -20.30166 -19.28562 -18.33251 -16.62346 -16.16563 -15.82379 -15.28253 -15.05691 -14.57896 -14.33240 -14.14582 -13.77164 -13.69322 -13.40362 -12.88322 -12.52174 -12.40580 -12.28625 -12.24793 -11.93823 -11.82160 -11.67348 -11.61729 -11.21527 -11.11316 -11.01260 -10.92281 -10.86451 -10.60770 -10.49669 -10.43651 -9.90219 -9.70922 -9.58775 -9.23850 -9.16560 -8.41094 -8.32713 -7.21373 -6.04178 -4.17668 2.84480 3.22164 3.24844 3.31477 3.35160 4.35629 4.44382 4.70816 4.78520 4.90976 5.13292 5.20156 5.33955 5.43952 5.45966 5.50946 5.59811 5.64376 5.71830 5.74912 5.79165 5.87751 5.94380 5.95966 6.09266 6.11129 6.16080 6.25359 6.34274 6.39021 6.44510 6.60243 6.63498 6.74843 6.82690 7.05442 7.13740 7.26543 7.54615 7.67108 7.71337 7.90717 8.08425 8.23130 8.38862 8.40826 8.91903 9.50508 10.94944 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.005364 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.721433 B = 5218.355977 C = 5904.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.532 5.532 14 C 0.048 3.952 15 C 0.091 3.909 16 N -0.602 5.602 17 C 0.522 3.478 18 O -0.552 6.552 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.153 4.153 22 C -0.153 4.153 23 C 0.114 3.886 24 C 0.047 3.953 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.261 0.739 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 10.211 -9.303 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.108 3.892 4 H 0.058 0.942 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.256 5.256 14 C -0.082 4.082 15 C -0.032 4.032 16 N -0.334 5.334 17 C 0.310 3.690 18 O -0.430 6.430 19 C -0.089 4.089 20 C -0.182 4.182 21 C -0.210 4.210 22 C -0.210 4.210 23 C -0.009 4.009 24 C -0.082 4.082 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.157 9.734 -9.647 14.643 hybrid contribution 1.971 -0.094 0.412 2.016 sum -3.186 9.639 -9.236 13.725 Atomic orbital electron populations 1.21706 0.98754 0.98483 1.00563 1.21645 0.92321 0.99150 1.02062 1.19296 0.93120 0.91206 0.85536 0.94214 1.21749 0.92803 1.38205 1.05461 0.92689 1.24891 0.97771 0.94955 0.95674 1.69882 1.34694 1.38273 1.09398 0.86647 0.86261 0.77813 0.77949 1.20002 1.20985 1.20950 1.62450 1.57955 1.00835 1.04392 1.22250 0.98866 0.91126 0.95953 1.22602 0.99837 0.96099 0.84628 1.48109 1.59601 1.08621 1.17107 1.20535 0.76953 0.89787 0.81729 1.90641 1.47888 1.68145 1.36338 1.20755 0.97707 0.92022 0.98438 1.21646 1.02029 1.00111 0.94387 1.22245 0.94675 1.00947 1.03171 1.22126 0.98927 1.01856 0.98139 1.21837 1.00698 0.79131 0.99206 1.22302 0.97643 0.98864 0.89369 0.94184 0.93428 0.95573 0.94783 0.88878 0.92914 0.90519 0.94070 0.91241 0.88240 0.92316 0.92247 0.91901 0.90561 0.91719 0.92252 0.91959 0.91388 0.90729 0.89776 0.91566 0.94120 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.80 37.16 0.36 -2.31 16 2 C -0.11 -2.57 5.06 -26.73 -0.14 -2.70 16 3 C 0.21 4.99 1.74 -68.86 -0.12 4.87 16 4 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 5 C -0.54 -13.99 7.22 -34.44 -0.25 -14.24 16 6 H 0.05 1.46 5.86 -52.48 -0.31 1.15 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.15 11.30 55.43 0.63 -23.53 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.42 4.07 -227.72 -0.93 -11.34 16 14 C 0.05 0.83 5.21 -3.70 -0.02 0.81 16 15 C 0.09 1.25 4.22 -3.60 -0.02 1.24 16 16 N -0.60 -9.40 2.99 -172.46 -0.52 -9.92 16 17 C 0.52 8.30 6.41 -10.99 -0.07 8.23 16 18 O -0.55 -10.64 15.43 5.56 0.09 -10.55 16 19 C -0.09 -1.03 0.75 -155.66 -0.12 -1.14 16 20 C -0.12 -1.39 7.73 37.16 0.29 -1.11 16 21 C -0.15 -1.47 7.92 37.16 0.29 -1.18 16 22 C -0.15 -1.69 8.12 37.16 0.30 -1.39 16 23 C 0.11 1.89 6.61 -3.60 -0.02 1.87 16 24 C 0.05 0.90 4.95 -3.70 -0.02 0.88 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 27 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.03 0.76 6.02 -51.93 -0.31 0.45 16 29 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 32 H 0.04 0.81 7.02 -51.93 -0.36 0.44 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.14 2.52 -51.93 -0.13 1.01 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.78 8.01 -51.93 -0.42 0.37 16 38 H 0.08 0.68 4.94 -51.93 -0.26 0.43 16 39 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 40 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 41 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 43 H 0.07 0.88 5.23 -51.93 -0.27 0.61 16 44 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.88 6.69 -51.93 -0.35 0.54 16 47 H 0.08 1.61 5.87 -51.93 -0.30 1.31 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -28.73 344.16 -8.15 -36.88 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.97 Total: 1.86 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 0.39 Total: -4.43 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.82 Total: -44.79 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.73 -8.15 -36.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.345 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds