Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47232 * 2 1 4 4 O 1.21281 * 119.99654 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00251 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00243 * 0.02562 * 5 3 2 7 7 C 1.46497 * 120.00088 * 179.97438 * 5 3 2 8 8 C 1.53119 * 109.52147 * 120.00224 * 7 5 3 9 9 C 1.53040 * 109.27960 * 177.56359 * 8 7 5 10 10 N 1.46845 * 109.52089 * 300.81664 * 9 8 7 11 11 C 1.46905 * 111.00058 * 185.83611 * 10 9 8 12 12 H 1.09000 * 109.47099 * 186.50595 * 11 10 9 13 13 C 1.50693 * 109.47349 * 306.50798 * 11 10 9 14 14 H 1.08004 * 119.99894 * 359.97438 * 13 11 10 15 15 C 1.37873 * 120.00252 * 179.97438 * 13 11 10 16 16 N 1.31519 * 119.99830 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00334 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47081 * 60.00000 * 17 15 13 19 19 H 1.48497 * 109.47236 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47127 * 300.00172 * 17 15 13 21 21 C 1.53004 * 109.46775 * 66.50571 * 11 10 9 22 22 C 1.53009 * 109.46890 * 62.73851 * 21 11 10 23 23 C 1.46845 * 111.19504 * 61.74615 * 10 9 8 24 24 C 1.53041 * 109.52539 * 298.25272 * 23 10 9 25 25 H 1.08995 * 109.46974 * 299.99887 * 1 2 3 26 26 H 1.09000 * 109.46925 * 59.99970 * 1 2 3 27 27 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47639 * 239.99963 * 2 1 3 29 29 H 1.09002 * 109.47395 * 119.99432 * 2 1 3 30 30 H 1.09001 * 109.47281 * 270.00333 * 6 5 3 31 31 H 1.09006 * 109.47130 * 29.99892 * 6 5 3 32 32 H 1.09000 * 109.47150 * 149.99417 * 6 5 3 33 33 H 1.09004 * 109.57608 * 359.84885 * 7 5 3 34 34 H 1.08997 * 109.50512 * 57.61762 * 8 7 5 35 35 H 1.09001 * 109.50429 * 297.50469 * 8 7 5 36 36 H 1.09000 * 109.46302 * 180.80763 * 9 8 7 37 37 H 1.08994 * 109.46233 * 60.83548 * 9 8 7 38 38 H 0.96996 * 120.00221 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.46986 * 302.74224 * 21 11 10 40 40 H 1.09000 * 109.47121 * 182.73927 * 21 11 10 41 41 H 1.08996 * 109.46837 * 294.67026 * 22 21 11 42 42 H 1.08995 * 109.46702 * 54.67207 * 22 21 11 43 43 H 1.09004 * 109.46588 * 174.66769 * 22 21 11 44 44 H 1.09000 * 109.46727 * 58.27237 * 23 10 9 45 45 H 1.09000 * 109.46277 * 178.24018 * 23 10 9 46 46 H 1.09002 * 109.50030 * 299.24272 * 24 23 10 47 47 H 1.08998 * 109.50735 * 179.12012 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3095 0.5537 0.0005 7 6 3.8457 3.0484 0.0000 8 6 4.6960 3.2910 1.2500 9 6 5.2530 4.7159 1.2136 10 7 6.0667 4.8939 0.0042 11 6 6.7303 6.2045 0.0043 12 1 7.2318 6.3579 -0.9513 13 6 5.7034 7.2875 0.2122 14 1 4.6618 7.0283 0.3319 15 6 6.0934 8.6094 0.2497 16 7 7.3619 8.9251 0.1045 17 14 4.8203 9.9520 0.5067 18 1 4.1361 9.7429 1.8080 19 1 5.4913 11.2768 0.5081 20 1 3.8214 9.9037 -0.5911 21 6 7.7602 6.2545 1.1347 22 6 8.8406 5.1997 0.8872 23 6 5.2605 4.7124 -1.2096 24 6 4.7036 3.2874 -1.2456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 4.5452 0.2772 1.0282 31 1 3.8693 -0.3007 -0.5137 32 1 5.2221 0.8560 -0.5130 33 1 2.9991 3.7350 -0.0036 34 1 5.5204 2.5784 1.2733 35 1 4.0793 3.1640 2.1399 36 1 5.8706 4.8871 2.0952 37 1 4.4280 5.4282 1.2043 38 1 7.6364 9.8550 0.1312 39 1 7.2665 6.0528 2.0852 40 1 8.2180 7.2432 1.1656 41 1 8.3987 4.2053 0.9504 42 1 9.2694 5.3445 -0.1043 43 1 9.6234 5.2980 1.6395 44 1 4.4355 5.4248 -1.2076 45 1 5.8835 4.8811 -2.0880 46 1 5.5283 2.5748 -1.2616 47 1 4.0925 3.1578 -2.1387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -44.683492 kcal Electronic energy + Delta-G solvation = -23771.746252 eV Core-core repulsion = 20567.974515 eV Total energy + Delta-G solvation = -3203.771737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14794 -38.28515 -35.90063 -33.85945 -32.80030 -31.61637 -30.41003 -29.97936 -27.07712 -26.42490 -24.90082 -23.22070 -22.65719 -21.91706 -19.63799 -18.95849 -18.86805 -17.11149 -16.40179 -16.03969 -15.89206 -15.18247 -14.37255 -14.15418 -14.00938 -13.67460 -13.39150 -13.18459 -12.90328 -12.79506 -12.68136 -12.61525 -12.26774 -12.10712 -11.77598 -11.68583 -11.46308 -11.31878 -11.12203 -10.89806 -10.74900 -10.61686 -10.55251 -10.35241 -10.26894 -9.79795 -9.67654 -9.62662 -9.32301 -9.06725 -8.50930 -8.34755 -7.11273 -5.97724 -4.10856 2.66589 3.03956 3.30134 3.34804 3.38682 4.41459 4.47400 4.86489 4.89863 4.97857 5.02725 5.19044 5.20293 5.27231 5.35010 5.44112 5.54866 5.61000 5.64572 5.76761 5.78289 5.93873 6.01922 6.07036 6.13092 6.29382 6.35606 6.36574 6.45931 6.53000 6.57732 6.68317 6.73032 6.77228 6.88075 7.11702 7.19059 7.37394 7.45178 7.61593 7.77884 7.98816 8.16863 8.23284 8.33240 8.48511 8.99080 9.57000 11.01561 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.004481 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.446206 B = 6247.499936 C = 7123.751396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.507 3.493 4 O -0.543 6.543 5 N -0.611 5.611 6 C 0.076 3.924 7 C 0.138 3.862 8 C -0.120 4.120 9 C 0.065 3.935 10 N -0.533 5.533 11 C 0.215 3.785 12 H 0.037 0.963 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.070 3.930 16 N -0.886 5.886 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.110 4.110 22 C -0.135 4.135 23 C 0.066 3.934 24 C -0.120 4.120 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.032 0.968 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.024 0.976 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -18.077 -0.112 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.295 3.705 4 O -0.420 6.420 5 N -0.343 5.343 6 C -0.067 4.067 7 C 0.036 3.964 8 C -0.159 4.159 9 C -0.064 4.064 10 N -0.257 5.257 11 C 0.109 3.891 12 H 0.055 0.945 13 C -0.583 4.583 14 H 0.074 0.926 15 C -0.133 4.133 16 N -0.524 5.524 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.148 4.148 22 C -0.193 4.193 23 C -0.063 4.063 24 C -0.159 4.159 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.940 -17.786 -0.122 18.460 hybrid contribution -1.157 1.402 0.157 1.825 sum -6.097 -16.384 0.034 17.482 Atomic orbital electron populations 1.21533 0.93254 1.01290 1.03395 1.21655 0.98409 0.94234 1.03912 1.20790 0.81993 0.91736 0.75943 1.90698 1.54892 1.46612 1.49833 1.48048 1.05657 1.07537 1.73090 1.21777 0.94081 0.89051 1.01819 1.21253 0.97531 0.81712 0.95939 1.21959 0.98553 0.99180 0.96215 1.21850 0.96659 0.92993 0.94933 1.62435 1.28758 1.34420 1.00115 1.19261 0.91845 0.82465 0.95546 0.94463 1.21724 0.94283 0.91926 1.50416 0.92559 1.24891 0.95055 0.98539 0.94807 1.69863 1.14694 1.18112 1.49772 0.86760 0.81824 0.81249 0.78806 1.20318 1.21254 1.20358 1.21592 0.95901 0.99609 0.97739 1.21685 0.98275 1.00074 0.99254 1.21789 0.96602 0.93432 0.94515 1.21943 0.98624 0.98903 0.96382 0.92026 0.92026 0.92293 0.89141 0.89160 0.92644 0.91392 0.90380 0.88592 0.91601 0.92546 0.90859 0.94224 0.92867 0.94907 0.89057 0.93581 0.94247 0.95710 0.94525 0.91485 0.91444 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 2 C -0.14 -1.27 4.97 -27.88 -0.14 -1.41 16 3 C 0.51 6.90 7.67 -10.98 -0.08 6.81 16 4 O -0.54 -9.78 15.31 5.56 0.09 -9.70 16 5 N -0.61 -7.78 2.77 -173.79 -0.48 -8.26 16 6 C 0.08 0.67 9.26 59.85 0.55 1.22 16 7 C 0.14 2.14 2.59 -67.81 -0.18 1.96 16 8 C -0.12 -1.88 5.41 -26.65 -0.14 -2.02 16 9 C 0.06 1.24 4.78 -3.83 -0.02 1.22 16 10 N -0.53 -10.78 4.05 -228.08 -0.92 -11.71 16 11 C 0.22 5.17 1.73 -68.86 -0.12 5.05 16 12 H 0.04 1.00 7.97 -51.93 -0.41 0.58 16 13 C -0.54 -14.43 7.24 -34.44 -0.25 -14.68 16 14 H 0.06 1.52 5.84 -52.48 -0.31 1.21 16 15 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 16 N -0.89 -24.75 11.30 55.43 0.63 -24.13 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.11 -2.55 5.12 -26.72 -0.14 -2.69 16 22 C -0.14 -2.68 9.71 37.16 0.36 -2.32 16 23 C 0.07 1.24 5.20 -3.83 -0.02 1.23 16 24 C -0.12 -1.83 5.40 -26.65 -0.14 -1.97 16 25 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.63 7.40 -51.93 -0.38 0.25 16 29 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 32 H 0.08 0.70 6.37 -51.93 -0.33 0.37 16 33 H 0.10 1.78 6.91 -51.93 -0.36 1.42 16 34 H 0.07 0.96 7.60 -51.93 -0.39 0.57 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.45 6.19 -51.93 -0.32 1.13 16 37 H 0.04 0.86 6.34 -51.93 -0.33 0.53 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.03 0.75 6.34 -51.93 -0.33 0.42 16 40 H 0.09 2.39 6.00 -51.93 -0.31 2.07 16 41 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.77 7.34 -51.93 -0.38 0.39 16 45 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 46 H 0.07 0.95 6.56 -51.93 -0.34 0.61 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -29.63 352.50 -8.76 -38.40 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.29 Total: 0.51 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.07 Total: -6.73 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.78 Total: -44.09 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.63 -8.76 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.287 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds