Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47250 * 2 1 4 4 O 1.21287 * 120.00003 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00264 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99957 * 359.97438 * 5 3 2 7 7 C 1.46500 * 119.99882 * 180.02562 * 5 3 2 8 8 C 1.53126 * 109.51912 * 239.99814 * 7 5 3 9 9 C 1.53042 * 109.27817 * 182.44150 * 8 7 5 10 10 N 1.46843 * 109.52319 * 59.17525 * 9 8 7 11 11 C 1.46904 * 110.99985 * 174.15995 * 10 9 8 12 12 H 1.08997 * 109.46768 * 174.29146 * 11 10 9 13 13 C 1.50703 * 109.46753 * 54.29721 * 11 10 9 14 14 H 1.07993 * 120.00260 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99803 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99763 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 119.99955 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.47102 * 89.99777 * 17 15 13 19 19 H 1.48500 * 109.47407 * 209.99781 * 17 15 13 20 20 H 1.48500 * 109.47296 * 330.00057 * 17 15 13 21 21 C 1.52997 * 109.47071 * 294.29764 * 11 10 9 22 22 C 1.53005 * 109.46775 * 295.07737 * 21 11 10 23 23 C 1.46851 * 111.20135 * 298.25901 * 10 9 8 24 24 C 1.53045 * 109.52188 * 61.73985 * 23 10 9 25 25 H 1.09000 * 109.47162 * 300.00123 * 1 2 3 26 26 H 1.09003 * 109.46778 * 60.00454 * 1 2 3 27 27 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47619 * 239.99609 * 2 1 3 29 29 H 1.09003 * 109.46778 * 119.99545 * 2 1 3 30 30 H 1.08998 * 109.46942 * 270.00335 * 6 5 3 31 31 H 1.08995 * 109.47053 * 30.00278 * 6 5 3 32 32 H 1.09001 * 109.46803 * 150.00142 * 6 5 3 33 33 H 1.09001 * 109.57510 * 0.14751 * 7 5 3 34 34 H 1.09000 * 109.50172 * 302.37912 * 8 7 5 35 35 H 1.08995 * 109.50481 * 62.49596 * 8 7 5 36 36 H 1.08993 * 109.46172 * 179.19507 * 9 8 7 37 37 H 1.09003 * 109.46081 * 299.15945 * 9 8 7 38 38 H 0.97005 * 119.99216 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47123 * 55.08167 * 21 11 10 40 40 H 1.09006 * 109.46984 * 175.07992 * 21 11 10 41 41 H 1.09001 * 109.47262 * 299.99827 * 22 21 11 42 42 H 1.08993 * 109.47229 * 60.00638 * 22 21 11 43 43 H 1.09002 * 109.46817 * 179.97438 * 22 21 11 44 44 H 1.08998 * 109.46133 * 301.72606 * 23 10 9 45 45 H 1.09000 * 109.46380 * 181.75712 * 23 10 9 46 46 H 1.08996 * 109.50242 * 180.87924 * 24 23 10 47 47 H 1.09003 * 109.49806 * 60.76796 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3094 0.5536 -0.0005 7 6 3.8457 3.0483 0.0000 8 6 4.6960 3.2909 -1.2501 9 6 5.2531 4.7159 -1.2136 10 7 6.0667 4.8938 -0.0042 11 6 6.7304 6.2044 -0.0043 12 1 7.2436 6.3518 0.9459 13 6 5.7009 7.2887 -0.1927 14 1 4.6581 7.0302 -0.3018 15 6 6.0904 8.6109 -0.2257 16 7 5.1921 9.5571 -0.3906 17 14 7.8942 9.0582 -0.0362 18 1 8.5387 9.0929 -1.3737 19 1 8.0086 10.3935 0.6032 20 1 8.5693 8.0436 0.8123 21 6 7.7462 6.2615 -1.1470 22 6 8.8587 5.2425 -0.8917 23 6 5.2605 4.7124 1.2097 24 6 4.7036 3.2873 1.2455 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.5458 0.2777 1.0271 31 1 3.8689 -0.3010 -0.5140 32 1 5.2218 0.8557 -0.5147 33 1 2.9991 3.7349 0.0035 34 1 5.5205 2.5783 -1.2733 35 1 4.0794 3.1639 -2.1399 36 1 5.8706 4.8870 -2.0952 37 1 4.4281 5.4282 -1.2044 38 1 5.4663 10.4873 -0.4141 39 1 7.2481 6.0277 -2.0879 40 1 8.1755 7.2619 -1.2019 41 1 9.3567 5.4763 0.0492 42 1 8.4295 4.2421 -0.8369 43 1 9.5821 5.2828 -1.7061 44 1 4.4355 5.4247 1.2076 45 1 5.8835 4.8810 2.0881 46 1 4.0925 3.1577 2.1387 47 1 5.5283 2.5747 1.2617 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -36.371302 kcal Electronic energy + Delta-G solvation = -23814.693330 eV Core-core repulsion = 20611.282037 eV Total energy + Delta-G solvation = -3203.411293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16239 -38.41014 -36.02547 -33.95715 -32.79514 -31.94117 -30.52048 -30.16267 -27.25642 -26.75150 -24.95736 -23.01810 -22.78807 -21.99427 -19.90049 -19.08356 -18.89464 -17.14955 -16.53927 -16.29354 -15.89649 -15.40326 -14.39104 -14.33250 -14.02442 -13.77598 -13.53727 -13.21614 -13.01372 -12.80752 -12.73726 -12.60557 -12.38794 -12.30019 -11.91845 -11.79714 -11.76047 -11.50237 -11.31029 -11.05167 -10.95037 -10.66205 -10.62392 -10.42408 -10.09324 -10.00752 -9.65762 -9.55915 -9.51353 -9.20646 -8.56315 -8.52141 -7.17465 -6.10887 -4.11949 2.67032 3.03019 3.25414 3.36520 3.38475 4.37372 4.47452 4.84445 4.86560 4.90388 5.01124 5.12727 5.16681 5.20970 5.34397 5.41654 5.52525 5.59440 5.63352 5.72424 5.78698 5.86574 5.97377 5.98437 6.02186 6.08012 6.08730 6.20722 6.29821 6.34118 6.41371 6.50077 6.66613 6.67767 6.70897 6.80288 6.85742 6.94034 7.09498 7.23747 7.44283 7.56734 8.08763 8.14625 8.23669 8.45763 8.91898 9.52200 11.01842 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.004251 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.441230 B = 6585.692169 C = 7148.389157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.507 3.493 4 O -0.541 6.541 5 N -0.611 5.611 6 C 0.076 3.924 7 C 0.138 3.862 8 C -0.121 4.121 9 C 0.062 3.938 10 N -0.525 5.525 11 C 0.182 3.818 12 H 0.038 0.962 13 C -0.546 4.546 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.264 1.264 21 C -0.121 4.121 22 C -0.142 4.142 23 C 0.064 3.936 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.263 0.737 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -20.222 0.509 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.295 3.705 4 O -0.418 6.418 5 N -0.344 5.344 6 C -0.067 4.067 7 C 0.035 3.965 8 C -0.159 4.159 9 C -0.067 4.067 10 N -0.249 5.249 11 C 0.074 3.926 12 H 0.056 0.944 13 C -0.584 4.584 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.227 1.227 20 H -0.189 1.189 21 C -0.159 4.159 22 C -0.200 4.200 23 C -0.065 4.065 24 C -0.157 4.157 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.591 -19.906 0.500 19.921 hybrid contribution 0.462 1.049 0.030 1.147 sum -0.129 -18.857 0.530 18.865 Atomic orbital electron populations 1.21537 0.93227 1.01293 1.03443 1.21651 0.98438 0.94209 1.03882 1.20798 0.81984 0.91754 0.75963 1.90712 1.54859 1.46575 1.49625 1.48036 1.05669 1.07461 1.73236 1.21767 0.94072 0.89102 1.01757 1.21251 0.97646 0.81826 0.95769 1.21962 0.98629 0.98865 0.96477 1.21896 0.97000 0.93451 0.94351 1.62337 1.29347 1.32461 1.00781 1.19693 0.92639 0.85736 0.94530 0.94445 1.21643 0.95302 0.90535 1.50963 0.90488 1.24990 0.97248 0.96495 0.94144 1.69924 1.33631 1.00293 1.49606 0.86858 0.86025 0.77102 0.78262 1.20562 1.22656 1.18893 1.21924 0.96298 0.97098 1.00550 1.21726 0.98016 1.00744 0.99505 1.21826 0.96838 0.93919 0.93926 1.21911 0.98614 0.98578 0.96570 0.91996 0.91996 0.92299 0.89151 0.89183 0.92692 0.91375 0.90442 0.88388 0.91577 0.92282 0.90875 0.93430 0.92677 0.92282 0.93570 0.94021 0.91981 0.94879 0.93829 0.91443 0.92292 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.14 -1.26 4.97 -27.88 -0.14 -1.40 16 3 C 0.51 6.87 7.67 -10.99 -0.08 6.79 16 4 O -0.54 -9.80 15.31 5.55 0.09 -9.71 16 5 N -0.61 -7.66 2.77 -173.80 -0.48 -8.14 16 6 C 0.08 0.65 9.25 59.84 0.55 1.20 16 7 C 0.14 2.10 2.59 -67.81 -0.18 1.92 16 8 C -0.12 -1.82 5.40 -26.64 -0.14 -1.96 16 9 C 0.06 1.16 4.78 -3.83 -0.02 1.14 16 10 N -0.53 -10.18 4.05 -228.07 -0.92 -11.10 16 11 C 0.18 4.12 1.30 -68.86 -0.09 4.03 16 12 H 0.04 0.90 7.04 -51.93 -0.37 0.53 16 13 C -0.55 -14.77 7.81 -34.44 -0.27 -15.04 16 14 H 0.08 2.29 6.09 -52.49 -0.32 1.97 16 15 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 17 Si 0.89 21.77 24.41 -169.99 -4.15 17.62 16 18 H -0.28 -6.69 6.83 56.52 0.39 -6.30 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 21 C -0.12 -2.56 4.82 -26.73 -0.13 -2.69 16 22 C -0.14 -2.51 9.80 37.16 0.36 -2.15 16 23 C 0.06 1.18 5.19 -3.83 -0.02 1.16 16 24 C -0.12 -1.76 5.41 -26.65 -0.14 -1.90 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.63 7.40 -51.93 -0.38 0.24 16 29 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 32 H 0.08 0.66 6.39 -51.93 -0.33 0.33 16 33 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 34 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.37 6.12 -51.93 -0.32 1.06 16 37 H 0.05 1.04 6.38 -51.93 -0.33 0.71 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.06 1.23 6.22 -51.93 -0.32 0.91 16 40 H 0.05 1.05 3.22 -51.93 -0.17 0.88 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.04 7.75 -51.93 -0.40 0.63 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.04 0.93 7.29 -51.93 -0.38 0.55 16 45 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.91 7.59 -51.93 -0.39 0.51 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -31.52 345.52 -7.69 -39.21 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.15 Total: 1.24 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.05 Total: -7.83 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.63 Total: -45.73 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.52 -7.69 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.840 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds