Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46845 * 2 1 4 4 H 1.09004 * 109.46889 * 60.11569 * 3 2 1 5 5 C 1.50703 * 109.47303 * 180.11354 * 3 2 1 6 6 H 1.07995 * 120.00132 * 113.94935 * 5 3 2 7 7 C 1.37873 * 119.99825 * 293.95374 * 5 3 2 8 8 N 1.31522 * 119.99923 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00264 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47202 * 90.00263 * 9 7 5 11 11 H 1.48502 * 109.47127 * 210.00206 * 9 7 5 12 12 H 1.48506 * 109.46996 * 330.00056 * 9 7 5 13 13 N 1.46895 * 109.47333 * 300.11712 * 3 2 1 14 14 C 1.46907 * 111.00249 * 157.64259 * 13 3 2 15 15 C 1.52991 * 109.47265 * 82.25752 * 14 13 3 16 16 C 1.52998 * 109.46916 * 202.26029 * 14 13 3 17 17 C 1.46906 * 111.00143 * 281.59374 * 13 3 2 18 18 H 1.09003 * 110.91494 * 297.56478 * 17 13 3 19 19 C 1.55160 * 111.00028 * 61.46038 * 17 13 3 20 20 C 1.54330 * 102.93868 * 153.57940 * 19 17 13 21 21 N 1.47027 * 107.26966 * 337.80698 * 20 19 17 22 22 C 1.34773 * 125.64653 * 178.90979 * 21 20 19 23 23 C 1.50706 * 119.99854 * 0.03472 * 22 21 20 24 24 O 1.21280 * 120.00137 * 180.02562 * 22 21 20 25 25 C 1.47421 * 108.70198 * 358.93977 * 21 20 19 26 26 H 1.08999 * 109.46913 * 305.05704 * 1 2 3 27 27 H 1.08995 * 109.47061 * 65.06061 * 1 2 3 28 28 H 1.09001 * 109.46541 * 185.05903 * 1 2 3 29 29 H 1.09004 * 109.47475 * 240.00846 * 2 1 3 30 30 H 1.08998 * 109.47442 * 119.99993 * 2 1 3 31 31 H 0.97001 * 119.99872 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.46594 * 322.25578 * 14 13 3 33 33 H 1.09003 * 109.47209 * 64.45908 * 15 14 13 34 34 H 1.09002 * 109.47473 * 184.46547 * 15 14 13 35 35 H 1.09010 * 109.47238 * 304.46061 * 15 14 13 36 36 H 1.09000 * 109.47264 * 50.38860 * 16 14 13 37 37 H 1.09003 * 109.46872 * 170.38726 * 16 14 13 38 38 H 1.09002 * 109.47235 * 290.38150 * 16 14 13 39 39 H 1.08995 * 110.72115 * 271.94086 * 19 17 13 40 40 H 1.09000 * 110.71809 * 35.22170 * 19 17 13 41 41 H 1.08999 * 109.88044 * 97.22508 * 20 19 17 42 42 H 1.08995 * 109.87840 * 218.39270 * 20 19 17 43 43 H 1.09000 * 109.47080 * 0.02562 * 23 22 21 44 44 H 1.08996 * 109.46576 * 120.00625 * 23 22 21 45 45 H 1.08999 * 109.46977 * 239.99953 * 23 22 21 46 46 H 1.08998 * 110.36979 * 265.28365 * 25 21 20 47 47 H 1.09003 * 110.36237 * 142.96596 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6783 1.9558 0.8911 5 6 3.5470 1.4427 -0.0028 6 1 4.0854 1.8230 -0.8583 7 6 4.2384 0.9573 1.0868 8 7 5.5536 0.9569 1.0841 9 14 3.3073 0.3001 2.5668 10 1 3.0591 -1.1533 2.3900 11 1 4.1124 0.5189 3.7953 12 1 2.0101 1.0122 2.6916 13 7 1.5480 2.1359 -1.1980 14 6 1.5448 3.5915 -0.9998 15 6 2.9478 4.1444 -1.2577 16 6 0.5556 4.2364 -1.9727 17 6 2.3373 1.7674 -2.3809 18 1 3.3778 2.0706 -2.2644 19 6 2.2302 0.2466 -2.6692 20 6 2.4848 0.1642 -4.1891 21 7 2.1783 1.4861 -4.7553 22 6 2.2945 1.8308 -6.0530 23 6 2.7742 0.8188 -7.0614 24 8 2.0128 2.9554 -6.4093 25 6 1.7235 2.3720 -3.6683 26 1 -0.3633 0.5903 0.8412 27 1 -0.3633 0.4333 -0.9318 28 1 -0.3632 -1.0237 0.0906 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 6.0401 0.6157 1.8509 32 1 1.2474 3.8181 0.0241 33 1 3.2135 3.9880 -2.3032 34 1 2.9648 5.2111 -1.0342 35 1 3.6649 3.6281 -0.6194 36 1 -0.4043 3.7242 -1.9077 37 1 0.4250 5.2873 -1.7146 38 1 0.9416 4.1573 -2.9890 39 1 2.9933 -0.3047 -2.1200 40 1 1.2344 -0.1231 -2.4245 41 1 3.5288 -0.0865 -4.3770 42 1 1.8346 -0.5892 -4.6335 43 1 2.9760 -0.1272 -6.5591 44 1 2.0062 0.6703 -7.8205 45 1 3.6869 1.1815 -7.5342 46 1 0.6353 2.3697 -3.6071 47 1 2.0933 3.3853 -3.8251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = -5.984563 kcal Electronic energy + Delta-G solvation = -24922.014092 eV Core-core repulsion = 21719.920467 eV Total energy + Delta-G solvation = -3202.093625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13599 -38.58027 -36.06691 -34.18628 -32.15240 -31.34649 -29.89426 -29.19883 -27.96658 -26.60881 -26.32639 -23.19396 -22.67218 -20.87584 -20.07807 -19.27811 -18.59057 -17.18557 -16.52306 -16.05854 -15.21283 -15.12868 -14.68053 -14.26532 -14.05320 -13.62954 -13.29896 -12.96899 -12.85956 -12.65574 -12.55285 -12.27660 -12.21454 -12.02614 -11.94607 -11.69761 -11.44832 -11.37704 -11.11214 -10.95137 -10.70047 -10.63850 -10.49738 -10.13035 -10.06896 -9.85916 -9.68270 -9.57343 -9.45867 -9.00513 -8.61694 -8.39591 -7.26801 -6.17824 -4.18627 2.77933 3.21032 3.21863 3.32845 3.33947 4.32118 4.68546 4.72490 5.06374 5.09375 5.15482 5.30110 5.37074 5.45304 5.49146 5.64353 5.75568 5.80938 5.84230 5.94300 6.00075 6.02682 6.07741 6.11768 6.18388 6.24401 6.30378 6.31738 6.41202 6.53131 6.56291 6.62423 6.65561 6.71265 6.78967 6.84005 6.94613 7.09948 7.20795 7.24688 7.50730 7.74320 8.02745 8.10161 8.32368 8.40258 8.83637 9.45400 10.93235 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.006144 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.645692 B = 4556.275809 C = 4805.591044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.545 4.545 6 H 0.088 0.912 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.264 1.264 13 N -0.512 5.512 14 C 0.085 3.915 15 C -0.192 4.192 16 C -0.156 4.156 17 C 0.083 3.917 18 H 0.081 0.919 19 C -0.123 4.123 20 C 0.096 3.904 21 N -0.615 5.615 22 C 0.522 3.478 23 C -0.169 4.169 24 O -0.558 6.558 25 C 0.105 3.895 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -2.207 -8.382 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.106 0.894 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.235 5.235 14 C -0.024 4.024 15 C -0.250 4.250 16 C -0.214 4.214 17 C -0.027 4.027 18 H 0.099 0.901 19 C -0.161 4.161 20 C -0.027 4.027 21 N -0.349 5.349 22 C 0.312 3.688 23 C -0.229 4.229 24 O -0.437 6.437 25 C -0.017 4.017 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.659 -1.795 -8.620 11.670 hybrid contribution 0.567 -0.256 1.199 1.351 sum -7.092 -2.050 -7.420 10.467 Atomic orbital electron populations 1.21708 0.97662 0.98910 1.01591 1.22326 0.93928 0.99573 1.01646 1.19771 0.94141 0.90525 0.88254 0.94506 1.21718 0.89998 1.42291 1.04315 0.89428 1.24956 0.94565 0.94948 0.98092 1.69908 1.06234 1.46262 1.30882 0.86954 0.80187 0.79635 0.82473 1.20417 1.22457 1.18884 1.62504 1.51727 1.05482 1.03791 1.21493 0.94106 0.88057 0.98734 1.22716 0.99691 1.00350 1.02256 1.22262 0.99744 0.99126 1.00259 1.22626 0.97623 0.93739 0.88693 0.90134 1.23005 1.03579 0.97832 0.91650 1.22245 1.00344 0.84403 0.95713 1.48671 1.65339 1.13961 1.06976 1.20426 0.77608 0.88904 0.81888 1.21857 1.03506 0.98814 0.98715 1.90694 1.51562 1.22307 1.79174 1.22827 0.99416 0.93598 0.85817 0.94199 0.92092 0.95107 0.90345 0.93881 0.92657 0.91069 0.93443 0.94169 0.88621 0.92466 0.93478 0.91916 0.88445 0.89727 0.91501 0.91779 0.90453 0.89106 0.88992 0.90823 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.41 37.16 0.35 -2.00 16 2 C -0.14 -2.64 4.51 -26.73 -0.12 -2.76 16 3 C 0.18 3.75 1.28 -68.86 -0.09 3.66 16 4 H 0.04 0.84 6.14 -51.93 -0.32 0.52 16 5 C -0.55 -13.18 6.18 -34.44 -0.21 -13.39 16 6 H 0.09 2.28 4.64 -52.49 -0.24 2.04 16 7 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 8 N -0.90 -25.34 13.96 55.43 0.77 -24.57 16 9 Si 0.88 20.51 24.70 -169.99 -4.20 16.32 16 10 H -0.28 -6.38 6.89 56.52 0.39 -5.99 16 11 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -5.99 6.37 56.52 0.36 -5.63 16 13 N -0.51 -9.21 3.66 -209.67 -0.77 -9.97 16 14 C 0.09 1.47 2.86 -67.71 -0.19 1.28 16 15 C -0.19 -3.50 7.86 37.15 0.29 -3.21 16 16 C -0.16 -2.34 8.26 37.16 0.31 -2.03 16 17 C 0.08 1.43 1.30 -65.56 -0.09 1.34 16 18 H 0.08 1.64 4.36 -51.93 -0.23 1.41 16 19 C -0.12 -1.89 4.17 -24.89 -0.10 -2.00 16 20 C 0.10 1.25 5.81 -3.06 -0.02 1.23 16 21 N -0.62 -9.23 3.33 -170.52 -0.57 -9.80 16 22 C 0.52 7.95 7.96 -10.98 -0.09 7.87 16 23 C -0.17 -1.73 10.21 36.01 0.37 -1.37 16 24 O -0.56 -10.70 17.35 5.56 0.10 -10.60 16 25 C 0.11 1.71 4.18 -2.53 -0.01 1.70 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.43 3.67 -51.93 -0.19 1.24 16 30 H 0.04 0.90 4.09 -51.93 -0.21 0.69 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.07 1.28 7.51 -51.92 -0.39 0.89 16 33 H 0.05 0.85 5.37 -51.93 -0.28 0.57 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 2.07 5.24 -51.92 -0.27 1.80 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.96 4.28 -51.93 -0.22 0.74 16 39 H 0.10 1.67 6.73 -51.93 -0.35 1.32 16 40 H 0.08 1.27 6.25 -51.93 -0.32 0.94 16 41 H 0.07 0.81 8.02 -51.93 -0.42 0.40 16 42 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.08 0.66 6.60 -51.93 -0.34 0.31 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.20 7.16 -51.93 -0.37 0.83 16 47 H 0.08 1.32 5.33 -51.93 -0.28 1.05 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -28.58 328.93 -6.79 -35.37 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.39 Total: 6.02 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 0.30 Total: -7.73 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.56 Total: -44.34 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.10 Total: -10.60 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.20 Total: 16.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.58 -6.79 -35.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.387 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds