Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47231 * 2 1 4 4 H 1.09009 * 109.47049 * 310.47060 * 3 2 1 5 5 C 1.50698 * 109.47431 * 190.46901 * 3 2 1 6 6 H 1.07990 * 120.00487 * 245.87749 * 5 3 2 7 7 C 1.37888 * 119.99527 * 65.87850 * 5 3 2 8 8 N 1.31511 * 120.00250 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99482 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46997 * 60.00390 * 9 7 5 11 11 H 1.48506 * 109.46842 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47222 * 300.00119 * 9 7 5 13 13 N 1.46904 * 109.47329 * 70.46647 * 3 2 1 14 14 C 1.46905 * 110.99792 * 162.36603 * 13 3 2 15 15 C 1.52995 * 109.46978 * 255.41703 * 14 13 3 16 16 C 1.52995 * 109.47114 * 15.41946 * 14 13 3 17 17 C 1.46899 * 111.00033 * 286.32228 * 13 3 2 18 18 H 1.08995 * 110.89151 * 53.13680 * 17 13 3 19 19 C 1.55152 * 111.00214 * 177.01946 * 17 13 3 20 20 C 1.54373 * 102.92210 * 153.54557 * 19 17 13 21 21 N 1.47018 * 107.28677 * 337.85989 * 20 19 17 22 22 C 1.34781 * 125.64682 * 178.87103 * 21 20 19 23 23 C 1.50692 * 120.00316 * 0.04335 * 22 21 20 24 24 O 1.21285 * 119.99542 * 180.02562 * 22 21 20 25 25 C 1.47425 * 108.70513 * 358.90566 * 21 20 19 26 26 H 1.08998 * 109.47236 * 24.80955 * 1 2 3 27 27 H 1.09004 * 109.47036 * 144.81232 * 1 2 3 28 28 H 1.09006 * 109.46785 * 264.81028 * 1 2 3 29 29 H 1.08999 * 109.47174 * 239.99539 * 2 1 3 30 30 H 1.08997 * 109.47069 * 119.99808 * 2 1 3 31 31 H 0.96999 * 119.99698 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.46708 * 135.41884 * 14 13 3 33 33 H 1.08998 * 109.47408 * 46.37406 * 15 14 13 34 34 H 1.09000 * 109.47182 * 166.37706 * 15 14 13 35 35 H 1.09007 * 109.47021 * 286.37575 * 15 14 13 36 36 H 1.08996 * 109.47530 * 32.34783 * 16 14 13 37 37 H 1.08997 * 109.47148 * 152.34928 * 16 14 13 38 38 H 1.09005 * 109.47112 * 272.34449 * 16 14 13 39 39 H 1.09003 * 110.72295 * 271.93730 * 19 17 13 40 40 H 1.09004 * 110.72195 * 35.20804 * 19 17 13 41 41 H 1.08999 * 109.90256 * 218.41889 * 20 19 17 42 42 H 1.08999 * 109.97648 * 97.34155 * 20 19 17 43 43 H 1.09008 * 109.47212 * 359.97438 * 23 22 21 44 44 H 1.08992 * 109.47528 * 119.99781 * 23 22 21 45 45 H 1.09000 * 109.47431 * 240.00629 * 23 22 21 46 46 H 1.09000 * 110.36999 * 265.29209 * 25 21 20 47 47 H 1.09004 * 110.36572 * 142.96183 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5322 2.0074 -0.7819 5 6 3.5247 1.4504 -0.2582 6 1 4.2050 1.7830 0.5118 7 6 4.0146 1.0329 -1.4776 8 7 3.1862 0.6283 -2.4155 9 14 5.8549 1.0434 -1.7978 10 1 6.5331 0.1586 -0.8168 11 1 6.1207 0.5516 -3.1736 12 1 6.3739 2.4276 -1.6575 13 7 1.7667 2.0585 1.3053 14 6 2.5861 3.2620 1.5013 15 6 3.7251 2.9506 2.4741 16 6 3.1693 3.7062 0.1584 17 6 0.3377 2.3645 1.4541 18 1 -0.2713 1.4820 1.2580 19 6 0.0371 2.9463 2.8607 20 6 -1.2250 3.8015 2.6180 21 7 -1.2630 4.1274 1.1849 22 6 -2.2235 4.8434 0.5674 23 6 -3.3855 5.3858 1.3590 24 8 -2.1524 5.0515 -0.6253 25 6 -0.0770 3.5406 0.5350 26 1 -0.3633 0.9328 -0.4312 27 1 -0.3633 -0.8399 -0.5922 28 1 -0.3633 -0.0930 1.0235 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5309 0.3343 -3.2731 32 1 1.9669 4.0603 1.9104 33 1 4.1952 2.0081 2.1934 34 1 4.4643 3.7507 2.4362 35 1 3.3273 2.8710 3.4858 36 1 2.4693 3.4616 -0.6405 37 1 3.3403 4.7825 0.1747 38 1 4.1139 3.1908 -0.0157 39 1 -0.1690 2.1470 3.5726 40 1 0.8634 3.5679 3.2056 41 1 -1.1707 4.7181 3.2054 42 1 -2.1159 3.2372 2.8936 43 1 -3.2777 5.0993 2.4052 44 1 -3.4035 6.4726 1.2796 45 1 -4.3160 4.9771 0.9648 46 1 0.7254 4.2760 0.4747 47 1 -0.3319 3.1735 -0.4592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = 10.045269 kcal Electronic energy + Delta-G solvation = -24869.460338 eV Core-core repulsion = 21668.061819 eV Total energy + Delta-G solvation = -3201.398520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24110 -38.64584 -36.34550 -33.33987 -32.63735 -31.24318 -29.76661 -29.31795 -27.88771 -26.64273 -25.33110 -23.39748 -22.55252 -21.30127 -20.05693 -19.11615 -18.02656 -17.14019 -16.64152 -16.24877 -15.33504 -14.95249 -14.51002 -14.28111 -13.78195 -13.39892 -13.19165 -12.90140 -12.82101 -12.63486 -12.51242 -12.40678 -12.08138 -11.92928 -11.77926 -11.62218 -11.30857 -11.20667 -10.96517 -10.80382 -10.77372 -10.60076 -10.35166 -10.20345 -10.08594 -9.75907 -9.61329 -9.34157 -9.17905 -8.63431 -8.43637 -8.25927 -7.17416 -6.01416 -3.92674 2.74858 3.16233 3.30412 3.36356 3.38076 4.38603 4.57674 4.69790 4.94885 5.06590 5.15255 5.27915 5.30297 5.34512 5.45421 5.52016 5.69991 5.75167 5.76393 6.01127 6.07659 6.12675 6.15394 6.20245 6.24478 6.32978 6.39308 6.45138 6.47565 6.55661 6.70268 6.75789 6.88702 6.90091 7.03928 7.25567 7.29444 7.46107 7.68783 7.70329 7.78760 7.89031 8.12970 8.29584 8.30409 8.55417 8.97675 9.56475 11.06844 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.005660 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.488053 B = 4945.654189 C = 5161.549262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.015 0.985 5 C -0.501 4.501 6 H 0.078 0.922 7 C 0.055 3.945 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.515 5.515 14 C 0.085 3.915 15 C -0.134 4.134 16 C -0.170 4.170 17 C 0.054 3.946 18 H 0.116 0.884 19 C -0.130 4.130 20 C 0.101 3.899 21 N -0.615 5.615 22 C 0.519 3.481 23 C -0.168 4.168 24 O -0.550 6.550 25 C 0.070 3.930 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.005 0.995 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 5.010 11.584 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.033 0.967 5 C -0.540 4.540 6 H 0.096 0.904 7 C -0.147 4.147 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.238 5.238 14 C -0.023 4.023 15 C -0.192 4.192 16 C -0.227 4.227 17 C -0.057 4.057 18 H 0.134 0.866 19 C -0.168 4.168 20 C -0.022 4.022 21 N -0.350 5.350 22 C 0.308 3.692 23 C -0.228 4.228 24 O -0.428 6.428 25 C -0.054 4.054 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.955 4.743 11.074 14.437 hybrid contribution 0.676 0.614 -0.854 1.251 sum -7.279 5.357 10.220 13.643 Atomic orbital electron populations 1.22131 0.99811 1.00081 0.98688 1.21541 0.91274 0.99822 1.01873 1.19484 0.95832 0.90477 0.83281 0.96738 1.21352 0.91612 1.41888 0.99103 0.90385 1.24833 0.97261 0.96186 0.96370 1.69903 1.33885 1.44005 1.05072 0.86758 0.86159 0.78428 0.77351 1.20285 1.21451 1.20272 1.62508 1.00518 1.24846 1.35944 1.21477 0.94031 0.90779 0.96032 1.21898 0.97679 1.01957 0.97659 1.23064 1.06370 0.96092 0.97169 1.23604 0.93123 0.96727 0.92217 0.86623 1.22819 0.96228 0.99137 0.98637 1.22084 0.99424 0.99046 0.81664 1.48600 1.23871 1.52893 1.09636 1.20471 0.83028 0.77882 0.87775 1.21856 0.97172 1.03080 1.00666 1.90734 1.77704 1.58815 1.15559 1.23248 0.86823 0.96631 0.98656 0.93608 0.94667 0.94125 0.89666 0.93877 0.92964 0.93454 0.90893 0.94026 0.94294 0.91597 0.97638 0.87679 0.89945 0.90104 0.91751 0.91537 0.90625 0.89037 0.88974 0.90878 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.29 37.16 0.31 -2.55 16 2 C -0.11 -2.37 5.48 -26.73 -0.15 -2.52 16 3 C 0.21 4.88 0.83 -68.87 -0.06 4.82 16 4 H 0.02 0.39 5.43 -51.92 -0.28 0.11 16 5 C -0.50 -12.27 4.66 -34.44 -0.16 -12.43 16 6 H 0.08 1.87 3.42 -52.49 -0.18 1.69 16 7 C 0.05 1.41 5.26 -17.82 -0.09 1.32 16 8 N -0.89 -24.38 11.77 55.43 0.65 -23.73 16 9 Si 0.88 20.42 29.53 -169.99 -5.02 15.40 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.51 -9.82 4.27 -209.68 -0.89 -10.72 16 14 C 0.09 1.55 1.63 -67.72 -0.11 1.44 16 15 C -0.13 -2.27 9.04 37.15 0.34 -1.93 16 16 C -0.17 -3.52 6.89 37.15 0.26 -3.26 16 17 C 0.05 0.89 2.45 -65.56 -0.16 0.72 16 18 H 0.12 1.97 3.56 -51.93 -0.18 1.79 16 19 C -0.13 -1.66 6.29 -24.87 -0.16 -1.81 16 20 C 0.10 1.13 5.81 -3.04 -0.02 1.11 16 21 N -0.62 -9.23 3.33 -170.49 -0.57 -9.80 16 22 C 0.52 8.08 7.96 -10.99 -0.09 7.99 16 23 C -0.17 -1.65 10.21 36.00 0.37 -1.29 16 24 O -0.55 -11.24 17.35 5.55 0.10 -11.15 16 25 C 0.07 1.26 5.00 -2.53 -0.01 1.24 16 26 H 0.04 0.90 5.92 -51.93 -0.31 0.60 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.68 6.79 -51.93 -0.35 0.33 16 29 H 0.08 2.16 6.39 -51.93 -0.33 1.83 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.81 4.91 -51.93 -0.26 0.55 16 33 H 0.07 1.38 6.25 -51.93 -0.32 1.06 16 34 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 1.54 5.08 -51.93 -0.26 1.28 16 37 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.10 2.36 4.70 -51.93 -0.24 2.12 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.05 6.12 -51.93 -0.32 0.73 16 41 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 43 H 0.07 0.57 6.60 -51.92 -0.34 0.22 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.40 5.29 -51.93 -0.27 1.13 16 47 H 0.08 1.58 7.17 -51.93 -0.37 1.21 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -28.83 334.48 -7.81 -36.64 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.38 Total: 5.45 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 0.26 Total: -7.14 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.81 Total: -44.24 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.10 Total: -11.15 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.83 -7.81 -36.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.681 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds