Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 H 1.09003 * 109.47344 * 177.61528 * 3 2 1 5 5 C 1.50706 * 109.47237 * 297.61685 * 3 2 1 6 6 H 1.07996 * 119.99988 * 120.00097 * 5 3 2 7 7 C 1.37872 * 119.99737 * 299.99820 * 5 3 2 8 8 N 1.31516 * 120.00155 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00062 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47224 * 119.99866 * 9 7 5 12 12 H 1.48496 * 109.47302 * 240.00558 * 9 7 5 13 13 N 1.46908 * 109.47210 * 57.61670 * 3 2 1 14 14 C 1.46842 * 110.99968 * 55.77590 * 13 3 2 15 15 C 1.53038 * 109.52480 * 185.84309 * 14 13 3 16 16 C 1.53124 * 109.27544 * 300.82027 * 15 14 13 17 17 N 1.46496 * 109.52171 * 177.55866 * 16 15 14 18 18 C 1.46499 * 119.99906 * 116.06132 * 17 16 15 19 19 C 1.52997 * 109.47278 * 95.38929 * 18 17 16 20 20 C 1.34774 * 120.00042 * 296.06178 * 17 16 15 21 21 C 1.50701 * 119.99993 * 185.11312 * 20 17 16 22 22 O 1.21282 * 120.00461 * 5.11156 * 20 17 16 23 23 C 1.53124 * 109.15955 * 57.65453 * 16 15 14 24 24 C 1.46850 * 111.00096 * 179.97438 * 13 3 2 25 25 H 1.09004 * 109.47284 * 55.16205 * 1 2 3 26 26 H 1.08996 * 109.47498 * 295.15871 * 1 2 3 27 27 H 1.09003 * 109.46855 * 175.15984 * 1 2 3 28 28 H 1.09001 * 109.47008 * 119.99707 * 2 1 3 29 29 H 1.09002 * 109.47460 * 240.00481 * 2 1 3 30 30 H 0.97005 * 120.00049 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46405 * 305.86161 * 14 13 3 32 32 H 1.09000 * 109.46261 * 65.82209 * 14 13 3 33 33 H 1.09001 * 109.50474 * 180.87810 * 15 14 13 34 34 H 1.09003 * 109.50367 * 60.75968 * 15 14 13 35 35 H 1.08997 * 109.52002 * 297.75025 * 16 15 14 36 36 H 1.09004 * 109.46956 * 215.38733 * 18 17 16 37 37 H 1.09002 * 109.47114 * 335.38638 * 18 17 16 38 38 H 1.09002 * 109.47286 * 59.99814 * 19 18 17 39 39 H 1.08998 * 109.47460 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46827 * 300.00320 * 19 18 17 41 41 H 1.09002 * 109.47155 * 94.67361 * 21 20 17 42 42 H 1.09006 * 109.47136 * 214.67022 * 21 20 17 43 43 H 1.08999 * 109.47364 * 334.66620 * 21 20 17 44 44 H 1.09000 * 109.49831 * 182.40287 * 23 16 15 45 45 H 1.08996 * 109.50496 * 62.28573 * 23 16 15 46 46 H 1.09004 * 109.45909 * 294.17685 * 24 13 3 47 47 H 1.09003 * 109.46143 * 54.14044 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1291 1.4429 0.0428 5 6 1.5864 2.1357 -1.2590 6 1 0.9623 3.0149 -1.1965 7 6 1.9682 1.6474 -2.4905 8 7 2.7286 0.5771 -2.5666 9 14 1.4055 2.5062 -4.0511 10 1 0.5646 3.6775 -3.6958 11 1 2.5911 2.9624 -4.8201 12 1 0.6128 1.5611 -4.8778 13 7 1.5037 2.1515 1.1697 14 6 1.8421 1.4469 2.4128 15 6 1.1478 2.1300 3.5931 16 6 1.6033 3.5898 3.6716 17 7 0.8980 4.2647 4.7639 18 6 1.6474 4.7768 5.9138 19 6 1.9604 6.2590 5.6995 20 6 -0.4404 4.4144 4.7110 21 6 -1.1525 5.2082 5.7758 22 8 -1.0717 3.9104 3.8064 23 6 1.2830 4.2881 2.3471 24 6 1.9737 3.5423 1.2031 25 1 -0.3634 0.5871 -0.8435 26 1 -0.3634 0.4369 0.9301 27 1 -0.3633 -1.0240 -0.0867 28 1 1.8932 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.9970 0.2334 -3.4331 31 1 1.5091 0.4111 2.3454 32 1 2.9215 1.4720 2.5622 33 1 1.4116 1.6162 4.5175 34 1 0.0677 2.0930 3.4510 35 1 2.6775 3.6269 3.8525 36 1 1.0507 4.6585 6.8183 37 1 2.5788 4.2200 6.0177 38 1 1.0291 6.8157 5.5957 39 1 2.5176 6.6401 6.5553 40 1 2.5571 6.3772 4.7950 41 1 -1.2800 6.2367 5.4381 42 1 -2.1297 4.7648 5.9671 43 1 -0.5629 5.1973 6.6925 44 1 1.6435 5.3162 2.3813 45 1 0.2051 4.2851 2.1854 46 1 3.0526 3.5574 1.3583 47 1 1.7363 4.0287 0.2569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -33.382294 kcal Electronic energy + Delta-G solvation = -24156.504592 eV Core-core repulsion = 20953.222912 eV Total energy + Delta-G solvation = -3203.281680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26444 -37.94367 -36.00368 -34.35203 -31.98399 -30.92001 -30.12818 -29.99987 -28.67567 -26.15560 -23.88741 -23.53777 -22.74458 -22.04144 -19.99439 -18.90502 -18.58215 -16.63414 -16.45105 -16.04700 -15.27748 -15.11734 -14.13755 -14.05241 -13.97153 -13.68750 -13.52143 -13.38182 -13.20892 -12.78589 -12.69308 -12.37129 -12.27304 -12.02666 -11.84699 -11.74806 -11.45309 -11.36562 -11.10036 -10.88500 -10.66498 -10.48113 -10.37619 -10.20267 -10.00657 -9.77329 -9.55499 -9.33816 -9.22942 -8.72272 -8.48508 -8.30522 -6.98958 -5.93545 -3.96313 2.74468 3.04521 3.34157 3.42326 3.47479 4.47302 4.52222 4.69052 4.91881 4.99658 5.03377 5.22975 5.26727 5.30441 5.37690 5.39870 5.45097 5.51659 5.57127 5.70763 5.87594 5.96464 5.98601 6.04211 6.15098 6.30848 6.31926 6.48034 6.55084 6.66920 6.72559 6.82368 6.82779 6.92670 7.02628 7.23440 7.42493 7.49120 7.55558 7.76630 7.86607 7.92360 8.32192 8.33771 8.44576 8.72066 9.10189 9.67523 11.12875 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.004495 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.693228 B = 6227.152213 C = 6447.432855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.525 5.525 14 C 0.057 3.943 15 C -0.127 4.127 16 C 0.153 3.847 17 N -0.613 5.613 18 C 0.105 3.895 19 C -0.173 4.173 20 C 0.507 3.493 21 C -0.177 4.177 22 O -0.525 6.525 23 C -0.131 4.131 24 C 0.071 3.929 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.092 0.908 30 H 0.258 0.742 31 H 0.076 0.924 32 H 0.014 0.986 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.013 0.987 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 8.500 18.488 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.250 5.250 14 C -0.072 4.072 15 C -0.166 4.166 16 C 0.051 3.949 17 N -0.347 5.347 18 C -0.019 4.019 19 C -0.232 4.232 20 C 0.295 3.705 21 C -0.236 4.236 22 O -0.401 6.401 23 C -0.169 4.169 24 C -0.058 4.058 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.031 0.969 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.941 8.123 17.825 19.684 hybrid contribution 0.859 0.458 -0.692 1.194 sum -1.082 8.581 17.133 19.192 Atomic orbital electron populations 1.21470 0.97215 0.97513 1.01652 1.21587 0.95199 0.98227 1.00014 1.19256 0.92209 0.90767 0.86668 0.98748 1.21125 1.30474 1.11782 0.89654 0.91931 1.24895 0.95279 0.95115 0.98891 1.69893 1.36519 1.22655 1.24296 0.86537 0.78334 0.79692 0.83454 1.19754 1.21300 1.21110 1.61993 1.60066 1.01002 1.01921 1.22006 0.95946 0.98775 0.90468 1.21991 1.03696 0.93622 0.97245 1.21198 0.94882 0.92643 0.86213 1.48248 1.06729 1.58209 1.21491 1.21585 0.97001 0.94701 0.88582 1.22256 1.02202 0.96252 1.02446 1.20677 0.81956 0.80802 0.87081 1.22034 1.01844 1.01478 0.98284 1.90749 1.65550 1.47681 1.36078 1.22049 1.04210 0.97248 0.93420 1.21849 0.94891 0.90782 0.98242 0.92240 0.93952 0.96682 0.96864 0.88998 0.93189 0.90548 0.96783 0.93113 0.89192 0.90701 0.90548 0.90313 0.92340 0.91706 0.92046 0.89166 0.89327 0.90358 0.93090 0.88947 0.96850 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 9.45 37.15 0.35 -2.46 16 2 C -0.11 -2.76 4.96 -26.73 -0.13 -2.89 16 3 C 0.22 5.52 1.76 -68.86 -0.12 5.40 16 4 H -0.01 -0.14 8.14 -51.93 -0.42 -0.56 16 5 C -0.49 -13.47 6.63 -34.44 -0.23 -13.70 16 6 H 0.06 1.75 6.71 -52.49 -0.35 1.40 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.60 11.30 55.43 0.63 -24.98 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 N -0.52 -11.61 3.76 -228.06 -0.86 -12.47 16 14 C 0.06 1.10 4.92 -3.84 -0.02 1.08 16 15 C -0.13 -2.11 5.39 -26.65 -0.14 -2.25 16 16 C 0.15 2.27 2.61 -67.80 -0.18 2.09 16 17 N -0.61 -7.43 2.44 -165.97 -0.40 -7.83 16 18 C 0.10 0.83 5.78 -4.04 -0.02 0.81 16 19 C -0.17 -1.23 10.14 37.16 0.38 -0.85 16 20 C 0.51 6.82 7.14 -10.99 -0.08 6.74 16 21 C -0.18 -1.53 9.13 36.01 0.33 -1.20 16 22 O -0.52 -9.62 13.29 5.56 0.07 -9.54 16 23 C -0.13 -2.26 5.28 -26.65 -0.14 -2.40 16 24 C 0.07 1.45 5.25 -3.83 -0.02 1.43 16 25 H 0.06 1.49 7.14 -51.93 -0.37 1.12 16 26 H 0.04 0.95 7.34 -51.93 -0.38 0.57 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.01 0.29 6.36 -51.93 -0.33 -0.04 16 29 H 0.09 2.51 6.01 -51.93 -0.31 2.20 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.74 6.24 -51.93 -0.32 1.42 16 35 H 0.07 1.03 7.77 -51.93 -0.40 0.62 16 36 H 0.08 0.46 6.17 -51.93 -0.32 0.14 16 37 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 38 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.69 8.12 -51.93 -0.42 0.26 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.48 5.76 -51.93 -0.30 0.18 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.85 5.98 -51.93 -0.31 1.54 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 1.92 6.30 -51.93 -0.33 1.59 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -30.98 347.85 -8.64 -39.62 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.18 Total: -0.02 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.12 Total: -6.67 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.64 Total: -45.27 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.98 -8.64 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.241 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds