Wall clock time and date at job start Tue Mar 31 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 N 1.46500 * 109.47247 * 120.00483 * 2 1 3 5 5 C 1.46495 * 119.99669 * 299.99850 * 4 2 1 6 6 C 1.52998 * 109.47367 * 90.00297 * 5 4 2 7 7 N 1.46502 * 109.47768 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99823 * 270.00460 * 7 6 5 9 9 C 1.36939 * 119.99709 * 89.99592 * 7 6 5 10 10 H 1.07998 * 120.00134 * 339.14742 * 9 7 6 11 11 C 1.38806 * 119.99593 * 158.87290 * 9 7 6 12 12 N 1.31622 * 120.00136 * 348.50473 * 11 9 7 13 13 Si 1.86798 * 119.99960 * 168.50490 * 11 9 7 14 14 H 1.48492 * 109.47472 * 60.00063 * 13 11 9 15 15 H 1.48500 * 109.46992 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47045 * 299.99730 * 13 11 9 17 17 C 1.34774 * 119.99908 * 120.00097 * 4 2 1 18 18 O 1.21283 * 119.99759 * 179.97438 * 17 4 2 19 19 C 1.50701 * 120.00273 * 0.02562 * 17 4 2 20 20 H 1.08998 * 115.54899 * 325.72218 * 19 17 4 21 21 C 1.52996 * 117.49868 * 111.39179 * 19 17 4 22 22 C 1.52998 * 117.49870 * 180.02562 * 19 17 4 23 23 C 1.53002 * 117.50004 * 359.97438 * 22 19 17 24 24 C 1.52999 * 117.50164 * 145.01837 * 22 19 17 25 25 H 1.09000 * 109.47268 * 299.99500 * 1 2 3 26 26 H 1.08996 * 109.47325 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47268 * 240.00500 * 2 1 3 29 29 H 1.08997 * 109.47361 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47420 * 300.00485 * 3 2 1 31 31 H 1.09009 * 109.46934 * 60.00090 * 3 2 1 32 32 H 1.09002 * 109.47681 * 330.00362 * 5 4 2 33 33 H 1.09007 * 109.47409 * 209.99959 * 5 4 2 34 34 H 1.09004 * 109.47166 * 59.99326 * 6 5 4 35 35 H 1.09004 * 109.47307 * 300.00195 * 6 5 4 36 36 H 1.09000 * 109.46462 * 264.89769 * 8 7 6 37 37 H 1.08992 * 109.47229 * 24.89599 * 8 7 6 38 38 H 1.09001 * 109.46932 * 144.90429 * 8 7 6 39 39 H 0.97000 * 120.00246 * 180.02562 * 12 11 9 40 40 H 1.08998 * 117.49810 * 214.98077 * 21 19 17 41 41 H 1.09000 * 117.50407 * 359.97351 * 21 19 17 42 42 H 1.09001 * 109.46913 * 59.99940 * 23 22 19 43 43 H 1.09001 * 109.47514 * 180.02562 * 23 22 19 44 44 H 1.09001 * 109.47304 * 300.00107 * 23 22 19 45 45 H 1.09002 * 109.46804 * 59.99899 * 24 22 19 46 46 H 1.08996 * 109.47008 * 179.97438 * 24 22 19 47 47 H 1.08998 * 109.47030 * 300.00292 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5266 6 6 0.3635 -0.8488 2.9899 7 7 0.0098 -0.3489 4.3208 8 6 0.4984 -1.0400 5.5166 9 6 -0.7773 0.7646 4.4470 10 1 -0.8622 1.4617 3.6265 11 6 -1.4705 0.9942 5.6274 12 7 -1.5572 0.0450 6.5351 13 14 -2.2803 2.6505 5.9279 14 1 -3.2849 2.9103 4.8657 15 1 -2.9513 2.6403 7.2526 16 1 -1.2479 3.7178 5.9047 17 6 2.7932 -1.7865 1.0723 18 8 3.1979 -2.3580 2.0625 19 6 3.1578 -2.3009 -0.2965 20 1 2.3933 -2.1784 -1.0637 21 6 4.6199 -2.1796 -0.7304 22 6 4.0396 -3.5490 -0.3703 23 6 4.4843 -4.1790 0.9512 24 6 3.7810 -4.5300 -1.5155 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.5295 0.8906 2.4844 33 1 2.4629 -0.4295 3.2291 34 1 0.4984 -1.9297 3.0322 35 1 -0.4350 -0.6097 2.2875 36 1 -0.2593 -1.7414 5.8657 37 1 1.4121 -1.5828 5.2746 38 1 0.7057 -0.3099 6.2989 39 1 -2.0419 0.2053 7.3598 40 1 4.8174 -1.9778 -1.7831 41 1 5.3182 -1.7274 -0.0261 42 1 3.6069 -4.4797 1.5238 43 1 5.1026 -5.0532 0.7471 44 1 5.0607 -3.4526 1.5242 45 1 3.9221 -4.0208 -2.4689 46 1 4.4781 -5.3648 -1.4432 47 1 2.7589 -4.9029 -1.4506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278904413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:29 Heat of formation + Delta-G solvation = 10.719623 kcal Electronic energy + Delta-G solvation = -23683.824266 eV Core-core repulsion = 20482.454989 eV Total energy + Delta-G solvation = -3201.369277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.34149 -37.87212 -36.24489 -35.33730 -31.98014 -31.02781 -29.74059 -28.10913 -27.46312 -27.17598 -25.77921 -24.52369 -22.73688 -21.59559 -20.45390 -19.53887 -18.05731 -17.41561 -16.56486 -15.62342 -15.09080 -14.83663 -14.49889 -14.09124 -13.95333 -13.72939 -13.53888 -13.31390 -13.03411 -12.87905 -12.68999 -12.50291 -12.15661 -12.08223 -12.03411 -11.93383 -11.67068 -11.42282 -11.27105 -11.04330 -10.85956 -10.79062 -10.69370 -10.45305 -10.24668 -10.10366 -9.84683 -9.80953 -9.63144 -9.19753 -8.61228 -8.30529 -6.68011 -5.66082 -3.12284 2.71890 3.21375 3.40324 3.45746 3.46583 3.72738 4.45318 4.53685 4.56483 4.69815 4.83866 5.01068 5.04808 5.15457 5.23358 5.45813 5.48198 5.53723 5.55832 5.65267 5.67733 5.76134 5.82494 5.84189 5.87745 5.90349 5.94205 5.96022 6.02434 6.15132 6.17816 6.29051 6.34889 6.44830 6.56597 6.66804 6.83445 6.96568 7.07868 7.51097 7.76374 7.78822 7.88107 8.43825 8.53513 9.29508 9.93463 10.42926 11.38430 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.004279 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.637664 B = 6541.426478 C = 7272.605380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 C -0.163 4.163 4 N -0.598 5.598 5 C 0.093 3.907 6 C 0.139 3.861 7 N -0.601 5.601 8 C 0.165 3.835 9 C -0.254 4.254 10 H 0.067 0.933 11 C 0.001 3.999 12 N -0.908 5.908 13 Si 0.904 3.096 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.285 1.285 17 C 0.538 3.462 18 O -0.534 6.534 19 C -0.186 4.186 20 H 0.120 0.880 21 C -0.149 4.149 22 C -0.096 4.096 23 C -0.102 4.102 24 C -0.115 4.115 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.028 0.972 37 H -0.001 1.001 38 H 0.043 0.957 39 H 0.252 0.748 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -3.552 -18.290 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.221 4.221 4 N -0.331 5.331 5 C -0.031 4.031 6 C 0.011 3.989 7 N -0.324 5.324 8 C 0.020 3.980 9 C -0.384 4.384 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.554 5.554 13 Si 0.734 3.266 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.326 3.674 18 O -0.411 6.411 19 C -0.207 4.207 20 H 0.138 0.862 21 C -0.186 4.186 22 C -0.096 4.096 23 C -0.159 4.159 24 C -0.172 4.172 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.262 -3.848 -17.539 20.681 hybrid contribution -0.679 1.139 0.165 1.336 sum 9.583 -2.709 -17.374 20.026 Atomic orbital electron populations 1.22336 0.94668 1.02673 1.03035 1.21160 0.94791 0.93441 0.87988 1.22162 1.01259 0.95974 1.02742 1.48136 1.49822 1.27606 1.07536 1.22445 1.00251 0.99111 0.81271 1.21173 0.93656 0.95867 0.88220 1.43865 1.57510 1.31541 0.99513 1.20798 0.93312 0.95595 0.88302 1.19136 1.20659 0.98273 1.00335 0.91531 1.24994 0.98720 0.97728 0.98260 1.70085 1.44965 1.31005 1.09316 0.86345 0.79164 0.83903 0.77155 1.21012 1.21646 1.21142 1.19600 0.78156 0.80104 0.89559 1.90702 1.53966 1.56913 1.39520 1.22425 0.95880 1.05062 0.97377 0.86202 1.23180 0.93392 1.00148 1.01915 1.21574 1.01012 0.88775 0.98279 1.21346 1.01524 0.99451 0.93607 1.21386 1.02044 0.98152 0.95660 0.90610 0.91960 0.92253 0.89465 0.92535 0.91707 0.91543 0.90848 0.90822 0.94628 0.93010 0.95386 0.98278 0.93827 0.93753 0.88179 0.88425 0.91226 0.93584 0.91689 0.92471 0.91760 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 8.14 37.16 0.30 -1.76 16 2 C 0.13 1.54 3.16 -67.93 -0.21 1.33 16 3 C -0.16 -1.79 9.17 37.16 0.34 -1.45 16 4 N -0.60 -9.18 2.40 -166.11 -0.40 -9.58 16 5 C 0.09 1.76 5.15 -4.05 -0.02 1.74 16 6 C 0.14 3.04 5.69 -4.04 -0.02 3.01 16 7 N -0.60 -15.75 2.93 -181.12 -0.53 -16.28 16 8 C 0.16 4.36 8.96 59.85 0.54 4.90 16 9 C -0.25 -7.06 9.68 -15.06 -0.15 -7.20 16 10 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 11 C 0.00 0.03 5.14 -17.43 -0.09 -0.06 16 12 N -0.91 -27.13 10.52 55.49 0.58 -26.55 16 13 Si 0.90 22.01 29.57 -169.99 -5.03 16.98 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 C 0.54 8.51 7.44 -10.99 -0.08 8.43 16 18 O -0.53 -10.31 12.68 5.55 0.07 -10.24 16 19 C -0.19 -2.19 4.73 -91.77 -0.43 -2.62 16 20 H 0.12 1.19 6.64 -51.93 -0.34 0.84 16 21 C -0.15 -1.48 9.52 -26.72 -0.25 -1.74 16 22 C -0.10 -1.05 2.70 -154.50 -0.42 -1.47 16 23 C -0.10 -1.31 8.09 37.16 0.30 -1.01 16 24 C -0.12 -0.97 9.85 37.16 0.37 -0.60 16 25 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.85 5.43 -51.93 -0.28 0.57 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.84 6.66 -51.92 -0.35 0.49 16 32 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 33 H 0.07 1.56 7.42 -51.93 -0.39 1.17 16 34 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.05 1.09 5.34 -51.93 -0.28 0.82 16 36 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 37 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 38 H 0.04 1.22 7.17 -51.93 -0.37 0.84 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 42 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 43 H 0.05 0.49 7.93 -51.93 -0.41 0.08 16 44 H 0.06 0.93 7.01 -51.93 -0.36 0.56 16 45 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 46 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -31.64 362.60 -8.03 -39.67 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.35 Total: -0.97 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 0.16 Total: 1.50 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.35 Total: -52.41 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.64 -8.03 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278904413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.385 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds