Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 N 1.46500 * 109.47247 * 120.00483 * 2 1 3 5 5 C 1.46495 * 119.99669 * 299.99850 * 4 2 1 6 6 C 1.52998 * 109.47367 * 90.00297 * 5 4 2 7 7 N 1.46502 * 109.47768 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99823 * 270.00460 * 7 6 5 9 9 C 1.36939 * 119.99709 * 89.99592 * 7 6 5 10 10 H 1.07998 * 120.00134 * 339.14742 * 9 7 6 11 11 C 1.38806 * 119.99593 * 158.87290 * 9 7 6 12 12 N 1.31622 * 120.00136 * 348.50473 * 11 9 7 13 13 Si 1.86798 * 119.99960 * 168.50490 * 11 9 7 14 14 H 1.48492 * 109.47472 * 60.00063 * 13 11 9 15 15 H 1.48500 * 109.46992 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47045 * 299.99730 * 13 11 9 17 17 C 1.34774 * 119.99908 * 120.00097 * 4 2 1 18 18 O 1.21283 * 119.99759 * 179.97438 * 17 4 2 19 19 C 1.50701 * 120.00273 * 0.02562 * 17 4 2 20 20 H 1.08998 * 115.54899 * 325.72218 * 19 17 4 21 21 C 1.52996 * 117.49868 * 111.39179 * 19 17 4 22 22 C 1.52998 * 117.49870 * 180.02562 * 19 17 4 23 23 C 1.53002 * 117.50004 * 359.97438 * 22 19 17 24 24 C 1.52999 * 117.50164 * 145.01837 * 22 19 17 25 25 H 1.09000 * 109.47268 * 299.99500 * 1 2 3 26 26 H 1.08996 * 109.47325 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47268 * 240.00500 * 2 1 3 29 29 H 1.08997 * 109.47361 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47420 * 300.00485 * 3 2 1 31 31 H 1.09009 * 109.46934 * 60.00090 * 3 2 1 32 32 H 1.09002 * 109.47681 * 330.00362 * 5 4 2 33 33 H 1.09007 * 109.47409 * 209.99959 * 5 4 2 34 34 H 1.09004 * 109.47166 * 59.99326 * 6 5 4 35 35 H 1.09004 * 109.47307 * 300.00195 * 6 5 4 36 36 H 1.09000 * 109.46462 * 264.89769 * 8 7 6 37 37 H 1.08992 * 109.47229 * 24.89599 * 8 7 6 38 38 H 1.09001 * 109.46932 * 144.90429 * 8 7 6 39 39 H 0.97000 * 120.00246 * 180.02562 * 12 11 9 40 40 H 1.08998 * 117.49810 * 214.98077 * 21 19 17 41 41 H 1.09000 * 117.50407 * 359.97351 * 21 19 17 42 42 H 1.09001 * 109.46913 * 59.99940 * 23 22 19 43 43 H 1.09001 * 109.47514 * 180.02562 * 23 22 19 44 44 H 1.09001 * 109.47304 * 300.00107 * 23 22 19 45 45 H 1.09002 * 109.46804 * 59.99899 * 24 22 19 46 46 H 1.08996 * 109.47008 * 179.97438 * 24 22 19 47 47 H 1.08998 * 109.47030 * 300.00292 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5266 6 6 0.3635 -0.8488 2.9899 7 7 0.0098 -0.3489 4.3208 8 6 0.4984 -1.0400 5.5166 9 6 -0.7773 0.7646 4.4470 10 1 -0.8622 1.4617 3.6265 11 6 -1.4705 0.9942 5.6274 12 7 -1.5572 0.0450 6.5351 13 14 -2.2803 2.6505 5.9279 14 1 -3.2849 2.9103 4.8657 15 1 -2.9513 2.6403 7.2526 16 1 -1.2479 3.7178 5.9047 17 6 2.7932 -1.7865 1.0723 18 8 3.1979 -2.3580 2.0625 19 6 3.1578 -2.3009 -0.2965 20 1 2.3933 -2.1784 -1.0637 21 6 4.6199 -2.1796 -0.7304 22 6 4.0396 -3.5490 -0.3703 23 6 4.4843 -4.1790 0.9512 24 6 3.7810 -4.5300 -1.5155 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.5295 0.8906 2.4844 33 1 2.4629 -0.4295 3.2291 34 1 0.4984 -1.9297 3.0322 35 1 -0.4350 -0.6097 2.2875 36 1 -0.2593 -1.7414 5.8657 37 1 1.4121 -1.5828 5.2746 38 1 0.7057 -0.3099 6.2989 39 1 -2.0419 0.2053 7.3598 40 1 4.8174 -1.9778 -1.7831 41 1 5.3182 -1.7274 -0.0261 42 1 3.6069 -4.4797 1.5238 43 1 5.1026 -5.0532 0.7471 44 1 5.0607 -3.4526 1.5242 45 1 3.9221 -4.0208 -2.4689 46 1 4.4781 -5.3648 -1.4432 47 1 2.7589 -4.9029 -1.4506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278904413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = -6.821981 kcal Electronic energy + Delta-G solvation = -23684.584927 eV Core-core repulsion = 20482.454989 eV Total energy + Delta-G solvation = -3202.129938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49774 -38.97941 -37.56986 -37.14204 -33.73959 -32.48931 -30.90171 -29.56575 -28.31158 -28.12501 -27.94311 -26.00325 -24.16257 -22.66717 -22.28715 -20.53540 -19.20364 -18.76220 -18.40430 -17.16429 -16.55543 -16.21375 -15.81883 -15.49504 -15.15014 -14.96400 -14.83863 -14.48851 -14.44449 -14.21882 -13.91685 -13.88325 -13.47762 -13.26424 -13.18505 -12.90669 -12.81760 -12.79541 -12.72229 -12.57571 -12.49271 -12.15980 -12.13205 -12.09342 -11.95375 -11.73483 -11.46606 -11.12454 -10.72279 -10.67213 -10.37842 -9.75796 -8.79138 -7.82888 -5.33098 1.45990 1.49749 1.55922 1.56649 2.00390 2.51671 2.81631 3.30963 3.47995 3.65672 3.75093 3.86444 3.93173 4.09281 4.18660 4.20363 4.23712 4.34825 4.54366 4.61644 4.69732 4.71621 4.80065 4.80975 4.84172 4.85781 4.89514 5.00140 5.02533 5.04004 5.08792 5.09862 5.12697 5.15601 5.25875 5.34994 5.39363 5.46008 5.55283 5.56278 5.63933 5.67130 6.29003 6.55566 7.11148 7.29019 7.81628 8.29063 9.21250 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.004279 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.637664 B = 6541.426478 C = 7272.605380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.598 5.598 5 C 0.116 3.884 6 C 0.147 3.853 7 N -0.618 5.618 8 C 0.183 3.817 9 C -0.263 4.263 10 H 0.079 0.921 11 C -0.057 4.057 12 N -0.944 5.944 13 Si 0.975 3.025 14 H -0.271 1.271 15 H -0.296 1.296 16 H -0.277 1.277 17 C 0.528 3.472 18 O -0.580 6.580 19 C -0.193 4.193 20 H 0.148 0.852 21 C -0.128 4.128 22 C -0.104 4.104 23 C -0.099 4.099 24 C -0.110 4.110 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.003 0.997 37 H 0.012 0.988 38 H 0.022 0.978 39 H 0.248 0.752 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -2.459 -22.133 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 C -0.217 4.217 4 N -0.330 5.330 5 C -0.010 4.010 6 C 0.020 3.980 7 N -0.342 5.342 8 C 0.038 3.962 9 C -0.392 4.392 10 H 0.096 0.904 11 C -0.251 4.251 12 N -0.591 5.591 13 Si 0.802 3.198 14 H -0.196 1.196 15 H -0.223 1.223 16 H -0.203 1.203 17 C 0.318 3.682 18 O -0.460 6.460 19 C -0.213 4.213 20 H 0.166 0.834 21 C -0.165 4.165 22 C -0.104 4.104 23 C -0.156 4.156 24 C -0.167 4.167 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.644 -2.742 -21.454 24.106 hybrid contribution -0.754 0.736 1.334 1.700 sum 9.890 -2.006 -20.120 22.509 Atomic orbital electron populations 1.22303 0.94841 1.02210 1.03048 1.21495 0.94593 0.94156 0.87318 1.22137 1.01400 0.95114 1.03040 1.48209 1.49774 1.27885 1.07145 1.21799 0.97353 0.98763 0.83077 1.21231 0.95355 0.94876 0.86587 1.44103 1.57743 1.31593 1.00756 1.20469 0.92967 0.94479 0.88263 1.19538 1.20204 0.98779 1.00720 0.90371 1.25871 0.99747 1.01354 0.98126 1.70274 1.46139 1.33070 1.09641 0.85228 0.78311 0.79432 0.76791 1.19621 1.22251 1.20264 1.20465 0.77291 0.79486 0.90993 1.90691 1.55577 1.58187 1.41543 1.22436 0.97775 1.05973 0.95160 0.83427 1.23289 0.91251 0.98419 1.03545 1.21702 1.01013 0.89619 0.98102 1.21246 1.00173 0.99775 0.94450 1.21388 1.02103 0.97845 0.95356 0.93681 0.88767 0.92958 0.86159 0.92292 0.88766 0.93834 0.90596 0.93701 0.96366 0.92063 0.97911 0.96963 0.95901 0.94287 0.84438 0.89865 0.94306 0.91614 0.94060 0.90078 0.91058 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 8.14 71.98 0.59 -3.09 16 2 C 0.13 2.66 3.16 44.99 0.14 2.80 16 3 C -0.16 -3.03 9.17 71.98 0.66 -2.37 16 4 N -0.60 -18.03 2.40 -797.85 -1.91 -19.95 16 5 C 0.12 4.47 5.15 86.38 0.44 4.92 16 6 C 0.15 6.58 5.69 86.38 0.49 7.07 16 7 N -0.62 -33.40 2.93 -726.94 -2.13 -35.53 16 8 C 0.18 10.19 8.96 127.77 1.15 11.34 16 9 C -0.26 -14.74 9.68 84.03 0.81 -13.93 16 10 H 0.08 4.12 7.86 -2.91 -0.02 4.10 16 11 C -0.06 -3.24 5.14 84.86 0.44 -2.81 16 12 N -0.94 -58.03 10.52 21.65 0.23 -57.80 16 13 Si 0.97 45.50 29.57 68.60 2.03 47.53 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.53 16.59 7.44 87.66 0.65 17.24 16 18 O -0.58 -23.42 12.68 -3.04 -0.04 -23.46 16 19 C -0.19 -4.04 4.73 -11.54 -0.05 -4.09 16 20 H 0.15 2.26 6.64 -2.39 -0.02 2.25 16 21 C -0.13 -2.13 9.52 30.60 0.29 -1.83 16 22 C -0.10 -2.05 2.70 -52.18 -0.14 -2.19 16 23 C -0.10 -2.56 8.09 71.98 0.58 -1.98 16 24 C -0.11 -1.47 9.85 71.98 0.71 -0.76 16 25 H 0.04 1.28 6.17 -2.39 -0.01 1.27 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.12 1.80 5.43 -2.39 -0.01 1.78 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.03 6.66 -2.38 -0.02 1.02 16 32 H 0.08 2.89 6.43 -2.39 -0.02 2.88 16 33 H 0.04 1.99 7.42 -2.38 -0.02 1.97 16 34 H 0.02 0.86 8.07 -2.38 -0.02 0.84 16 35 H 0.06 2.62 5.34 -2.39 -0.01 2.61 16 36 H 0.00 0.16 7.40 -2.39 -0.02 0.14 16 37 H 0.01 0.61 8.03 -2.39 -0.02 0.60 16 38 H 0.02 1.32 7.17 -2.39 -0.02 1.30 16 39 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.14 1.32 8.05 -2.39 -0.02 1.30 16 41 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 42 H 0.04 1.22 7.26 -2.39 -0.02 1.20 16 43 H 0.07 1.37 7.93 -2.39 -0.02 1.35 16 44 H 0.04 1.23 7.01 -2.39 -0.02 1.21 16 45 H 0.08 0.72 7.90 -2.39 -0.02 0.70 16 46 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.26 362.60 5.86 -66.40 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.92 Total: 12.49 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.76 Total: 10.32 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -3.81 Total: -113.28 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.26 5.86 -66.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278904413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.583 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds