Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46799 * 2 1 4 4 N 1.46901 * 109.46878 * 180.02562 * 3 2 1 5 5 C 1.46842 * 111.00279 * 51.59462 * 4 3 2 6 6 C 1.53039 * 109.52546 * 185.83998 * 5 4 3 7 7 C 1.53122 * 109.27428 * 300.82301 * 6 5 4 8 8 C 1.53116 * 109.16603 * 57.65246 * 7 6 5 9 9 C 1.46846 * 110.99662 * 175.80488 * 4 3 2 10 10 H 1.08999 * 109.46576 * 294.17264 * 9 4 3 11 11 C 1.50701 * 109.46361 * 54.14113 * 9 4 3 12 12 O 1.21283 * 119.99981 * 27.58062 * 11 9 4 13 13 N 1.34779 * 120.00059 * 207.57461 * 11 9 4 14 14 C 1.46496 * 120.00037 * 180.02562 * 13 11 9 15 15 H 1.08999 * 109.47436 * 35.00043 * 14 13 11 16 16 C 1.50703 * 109.47250 * 155.00000 * 14 13 11 17 17 H 1.08002 * 119.99881 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00035 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00352 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00064 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47081 * 90.00135 * 20 18 16 22 22 H 1.48497 * 109.47265 * 209.99867 * 20 18 16 23 23 H 1.48498 * 109.47182 * 329.99970 * 20 18 16 24 24 C 1.53008 * 109.47107 * 275.00223 * 14 13 11 25 25 C 1.52999 * 109.47025 * 64.99741 * 24 14 13 26 26 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47667 * 300.00244 * 1 2 3 28 28 H 1.09000 * 109.47226 * 60.00784 * 1 2 3 29 29 H 1.08991 * 109.47532 * 239.99739 * 2 1 3 30 30 H 1.09000 * 109.47226 * 119.99216 * 2 1 3 31 31 H 1.08991 * 109.47291 * 59.99591 * 3 2 1 32 32 H 1.09000 * 109.46592 * 299.99604 * 3 2 1 33 33 H 1.08996 * 109.46129 * 305.85276 * 5 4 3 34 34 H 1.08996 * 109.46684 * 65.82276 * 5 4 3 35 35 H 1.08995 * 109.50796 * 180.88055 * 6 5 4 36 36 H 1.08995 * 109.53616 * 60.77596 * 6 5 4 37 37 H 1.08997 * 109.52202 * 297.74333 * 7 6 5 38 38 H 1.09004 * 109.51977 * 177.55845 * 7 6 5 39 39 H 1.09001 * 109.50682 * 182.40692 * 8 7 6 40 40 H 1.09007 * 109.50345 * 62.28281 * 8 7 6 41 41 H 0.96997 * 119.99743 * 0.02562 * 13 11 9 42 42 H 0.96998 * 120.00772 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.46858 * 185.00254 * 24 14 13 44 44 H 1.08999 * 109.46503 * 304.99990 * 24 14 13 45 45 H 1.08992 * 109.46679 * 180.02562 * 25 24 14 46 46 H 1.09000 * 109.47067 * 299.99979 * 25 24 14 47 47 H 1.09003 * 109.46606 * 60.00468 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0348 0.5912 -1.0752 6 6 5.5577 0.4990 -0.9559 7 6 6.1582 1.9043 -1.0525 8 6 5.5580 2.7841 0.0475 9 6 4.0350 2.8099 -0.1009 10 1 3.7719 3.2301 -1.0717 11 6 3.4383 3.6590 0.9918 12 8 3.0822 3.1466 2.0318 13 7 3.3004 4.9878 0.8135 14 6 2.7209 5.8132 1.8759 15 1 3.0217 5.4197 2.8469 16 6 3.2117 7.2311 1.7348 17 1 3.8873 7.4914 0.9334 18 6 2.7972 8.1962 2.6279 19 7 1.9740 7.8794 3.6035 20 14 3.4050 9.9539 2.4525 21 1 2.4743 10.7147 1.5806 22 1 3.4633 10.5934 3.7914 23 1 4.7605 9.9507 1.8460 24 6 1.1950 5.7883 1.7662 25 6 0.6875 4.3699 2.0332 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9563 -0.8900 33 1 3.6030 -0.4062 -0.9925 34 1 3.7716 1.0216 -2.0414 35 1 5.9492 -0.1203 -1.7628 36 1 5.8219 0.0557 0.0041 37 1 5.9278 2.3326 -2.0279 38 1 7.2393 1.8479 -0.9246 39 1 5.9496 3.7974 -0.0426 40 1 5.8216 2.3769 1.0237 41 1 3.5849 5.3975 -0.0184 42 1 1.6822 8.5584 4.2317 43 1 0.7668 6.4716 2.4996 44 1 0.8978 6.0979 0.7642 45 1 -0.3994 4.3521 1.9546 46 1 1.1158 3.6867 1.2998 47 1 0.9848 4.0604 3.0352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320227732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -53.662438 kcal Electronic energy + Delta-G solvation = -24065.379860 eV Core-core repulsion = 20861.218767 eV Total energy + Delta-G solvation = -3204.161093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01170 -37.84172 -35.01459 -34.91481 -32.37147 -31.85233 -31.30331 -30.35241 -27.03552 -26.24278 -23.95508 -23.61791 -22.68184 -20.74119 -20.34578 -19.54184 -19.23375 -17.25968 -15.94003 -15.89473 -15.20787 -15.08786 -14.75122 -14.63230 -14.11182 -13.68949 -13.57019 -13.49534 -13.30751 -12.82044 -12.66147 -12.42748 -11.96143 -11.83780 -11.53326 -11.44662 -11.25074 -11.24434 -11.10124 -10.97199 -10.83439 -10.81216 -10.74575 -10.45051 -10.28554 -10.16393 -10.04381 -9.58079 -9.02826 -8.75940 -8.47867 -8.09786 -7.75883 -6.10946 -4.20235 3.24505 3.31670 3.33602 3.42201 3.78511 4.23977 4.40950 4.81399 4.90241 4.93033 5.10898 5.12240 5.20213 5.25707 5.35960 5.39774 5.49628 5.56680 5.62048 5.72002 5.75827 5.78753 5.89566 5.91712 5.98608 6.11718 6.12856 6.17889 6.29359 6.33478 6.39742 6.42368 6.54324 6.67510 7.05518 7.13498 7.24633 7.26591 7.39609 7.49931 7.64389 7.77095 7.93258 8.20240 8.72295 8.81554 9.21286 9.47703 10.94308 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.004952 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.085144 B = 5652.474375 C = 6790.309174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.044 3.956 4 N -0.513 5.513 5 C 0.051 3.949 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.106 4.106 9 C 0.069 3.931 10 H 0.050 0.950 11 C 0.505 3.495 12 O -0.530 6.530 13 N -0.710 5.710 14 C 0.272 3.728 15 H 0.049 0.951 16 C -0.533 4.533 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.127 4.127 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.386 0.614 42 H 0.264 0.736 43 H 0.098 0.902 44 H 0.029 0.971 45 H 0.021 0.979 46 H 0.041 0.959 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -12.933 -10.833 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.083 4.083 4 N -0.238 5.238 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.144 4.144 9 C -0.043 4.043 10 H 0.068 0.932 11 C 0.289 3.711 12 O -0.407 6.407 13 N -0.359 5.359 14 C 0.170 3.830 15 H 0.067 0.933 16 C -0.572 4.572 17 H 0.078 0.922 18 C -0.136 4.136 19 N -0.520 5.520 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.166 4.166 25 C -0.197 4.197 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.218 0.782 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.731 -13.385 -9.438 16.604 hybrid contribution 0.098 1.614 -1.329 2.093 sum 2.828 -11.771 -10.767 16.202 Atomic orbital electron populations 1.21728 0.95697 1.01359 1.02079 1.21600 0.95580 0.96577 1.02117 1.22437 0.86570 0.97296 1.02003 1.61693 1.07733 1.08884 1.45514 1.22212 0.95464 0.98054 0.91997 1.21603 0.94623 0.96991 1.02304 1.21576 0.99925 0.95553 0.98555 1.21509 0.92069 1.00439 1.00366 1.21655 0.96313 0.89342 0.96948 0.93227 1.20113 0.79455 0.83118 0.88445 1.90659 1.49420 1.72640 1.27948 1.46536 1.62160 1.06755 1.20415 1.18753 0.89361 0.88458 0.86436 0.93344 1.21237 1.28875 0.93094 1.13953 0.92178 1.24878 0.94815 0.99062 0.94881 1.69893 1.32591 1.33958 1.15524 0.86477 0.79146 0.84167 0.77481 1.20598 1.21081 1.19883 1.21928 0.98615 0.95459 1.00568 1.21910 0.97414 0.98820 1.01528 0.92800 0.92281 0.93046 0.92348 0.91061 0.88133 0.95811 0.90087 0.95377 0.91817 0.90948 0.92306 0.91591 0.90941 0.90351 0.78248 0.92595 0.88347 0.95218 0.95969 0.94003 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.12 -1.47 5.43 -26.73 -0.15 -1.62 16 3 C 0.04 0.66 4.57 -3.82 -0.02 0.64 16 4 N -0.51 -7.61 4.36 -228.08 -0.99 -8.60 16 5 C 0.05 0.59 5.03 -3.84 -0.02 0.57 16 6 C -0.12 -1.21 6.09 -26.65 -0.16 -1.38 16 7 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 8 C -0.11 -1.44 5.36 -26.65 -0.14 -1.59 16 9 C 0.07 1.08 2.23 -68.87 -0.15 0.92 16 10 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.51 9.97 4.73 -10.98 -0.05 9.92 16 12 O -0.53 -12.28 12.40 5.55 0.07 -12.21 16 13 N -0.71 -14.67 5.02 -54.93 -0.28 -14.95 16 14 C 0.27 6.80 2.24 -69.08 -0.15 6.64 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 16 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 19 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 25 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 6.19 -51.93 -0.32 0.30 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.84 4.39 -51.93 -0.23 1.61 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.86 5.84 -51.93 -0.30 0.55 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.89 3.97 -51.93 -0.21 0.68 16 47 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -29.12 351.98 -9.55 -38.67 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.40 Total: 7.53 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.86 Total: -7.24 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.64 Total: -47.62 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.12 -9.55 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.989 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds