Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46799 * 2 1 4 4 N 1.46901 * 109.46878 * 180.02562 * 3 2 1 5 5 C 1.46842 * 111.00279 * 51.59462 * 4 3 2 6 6 C 1.53039 * 109.52546 * 185.83998 * 5 4 3 7 7 C 1.53122 * 109.27428 * 300.82301 * 6 5 4 8 8 C 1.53116 * 109.16603 * 57.65246 * 7 6 5 9 9 C 1.46846 * 110.99662 * 175.80488 * 4 3 2 10 10 H 1.08999 * 109.46576 * 294.17264 * 9 4 3 11 11 C 1.50701 * 109.46361 * 54.14113 * 9 4 3 12 12 O 1.21283 * 119.99981 * 27.58062 * 11 9 4 13 13 N 1.34779 * 120.00059 * 207.57461 * 11 9 4 14 14 C 1.46496 * 120.00037 * 180.02562 * 13 11 9 15 15 H 1.08999 * 109.47436 * 35.00043 * 14 13 11 16 16 C 1.50703 * 109.47250 * 155.00000 * 14 13 11 17 17 H 1.08002 * 119.99881 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00035 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00352 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00064 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47081 * 90.00135 * 20 18 16 22 22 H 1.48497 * 109.47265 * 209.99867 * 20 18 16 23 23 H 1.48498 * 109.47182 * 329.99970 * 20 18 16 24 24 C 1.53008 * 109.47107 * 275.00223 * 14 13 11 25 25 C 1.52999 * 109.47025 * 64.99741 * 24 14 13 26 26 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47667 * 300.00244 * 1 2 3 28 28 H 1.09000 * 109.47226 * 60.00784 * 1 2 3 29 29 H 1.08991 * 109.47532 * 239.99739 * 2 1 3 30 30 H 1.09000 * 109.47226 * 119.99216 * 2 1 3 31 31 H 1.08991 * 109.47291 * 59.99591 * 3 2 1 32 32 H 1.09000 * 109.46592 * 299.99604 * 3 2 1 33 33 H 1.08996 * 109.46129 * 305.85276 * 5 4 3 34 34 H 1.08996 * 109.46684 * 65.82276 * 5 4 3 35 35 H 1.08995 * 109.50796 * 180.88055 * 6 5 4 36 36 H 1.08995 * 109.53616 * 60.77596 * 6 5 4 37 37 H 1.08997 * 109.52202 * 297.74333 * 7 6 5 38 38 H 1.09004 * 109.51977 * 177.55845 * 7 6 5 39 39 H 1.09001 * 109.50682 * 182.40692 * 8 7 6 40 40 H 1.09007 * 109.50345 * 62.28281 * 8 7 6 41 41 H 0.96997 * 119.99743 * 0.02562 * 13 11 9 42 42 H 0.96998 * 120.00772 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.46858 * 185.00254 * 24 14 13 44 44 H 1.08999 * 109.46503 * 304.99990 * 24 14 13 45 45 H 1.08992 * 109.46679 * 180.02562 * 25 24 14 46 46 H 1.09000 * 109.47067 * 299.99979 * 25 24 14 47 47 H 1.09003 * 109.46606 * 60.00468 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0348 0.5912 -1.0752 6 6 5.5577 0.4990 -0.9559 7 6 6.1582 1.9043 -1.0525 8 6 5.5580 2.7841 0.0475 9 6 4.0350 2.8099 -0.1009 10 1 3.7719 3.2301 -1.0717 11 6 3.4383 3.6590 0.9918 12 8 3.0822 3.1466 2.0318 13 7 3.3004 4.9878 0.8135 14 6 2.7209 5.8132 1.8759 15 1 3.0217 5.4197 2.8469 16 6 3.2117 7.2311 1.7348 17 1 3.8873 7.4914 0.9334 18 6 2.7972 8.1962 2.6279 19 7 1.9740 7.8794 3.6035 20 14 3.4050 9.9539 2.4525 21 1 2.4743 10.7147 1.5806 22 1 3.4633 10.5934 3.7914 23 1 4.7605 9.9507 1.8460 24 6 1.1950 5.7883 1.7662 25 6 0.6875 4.3699 2.0332 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9563 -0.8900 33 1 3.6030 -0.4062 -0.9925 34 1 3.7716 1.0216 -2.0414 35 1 5.9492 -0.1203 -1.7628 36 1 5.8219 0.0557 0.0041 37 1 5.9278 2.3326 -2.0279 38 1 7.2393 1.8479 -0.9246 39 1 5.9496 3.7974 -0.0426 40 1 5.8216 2.3769 1.0237 41 1 3.5849 5.3975 -0.0184 42 1 1.6822 8.5584 4.2317 43 1 0.7668 6.4716 2.4996 44 1 0.8978 6.0979 0.7642 45 1 -0.3994 4.3521 1.9546 46 1 1.1158 3.6867 1.2998 47 1 0.9848 4.0604 3.0352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320227732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -72.328194 kcal Electronic energy + Delta-G solvation = -24066.189268 eV Core-core repulsion = 20861.218767 eV Total energy + Delta-G solvation = -3204.970501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38881 -39.24912 -36.81043 -35.99865 -34.27276 -33.11611 -32.69980 -31.70488 -28.95435 -27.31329 -25.49970 -24.64786 -24.29209 -22.10373 -21.61787 -21.07307 -20.61589 -18.95787 -17.59503 -17.38741 -16.72238 -16.43380 -16.15259 -15.85163 -15.64905 -14.99326 -14.78255 -14.58538 -14.53931 -14.37324 -13.95308 -13.73768 -13.54523 -13.25226 -13.16103 -13.01198 -12.89333 -12.66254 -12.46443 -12.30085 -12.21422 -12.09173 -11.92068 -11.79033 -11.69723 -11.57408 -11.45704 -11.06696 -11.03374 -10.56313 -10.30952 -9.59571 -9.21113 -8.15855 -6.33365 1.44089 1.44858 1.55245 1.86645 2.32604 2.53326 2.99034 3.13565 3.80249 3.87801 3.96150 4.07966 4.11846 4.16502 4.31756 4.34204 4.41784 4.48046 4.54888 4.55571 4.60623 4.73034 4.77408 4.81311 4.88565 4.90766 5.03360 5.06179 5.09069 5.15574 5.20776 5.24871 5.28522 5.32314 5.38266 5.46387 5.49307 5.55850 5.64322 5.78928 5.90837 6.06885 6.17427 6.23351 6.74996 7.04520 7.34337 7.63676 8.89433 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.004952 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.085144 B = 5652.474375 C = 6790.309174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.046 3.954 4 N -0.531 5.531 5 C 0.049 3.951 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.105 4.105 9 C 0.079 3.921 10 H 0.068 0.932 11 C 0.502 3.498 12 O -0.569 6.569 13 N -0.708 5.708 14 C 0.281 3.719 15 H -0.005 1.005 16 C -0.547 4.547 17 H 0.070 0.930 18 C 0.016 3.984 19 N -0.915 5.915 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.119 4.119 25 C -0.125 4.125 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.400 0.600 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.050 0.950 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -13.573 -13.785 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.081 4.081 4 N -0.257 5.257 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.143 4.143 9 C -0.033 4.033 10 H 0.086 0.914 11 C 0.288 3.712 12 O -0.448 6.448 13 N -0.357 5.357 14 C 0.178 3.822 15 H 0.013 0.987 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.158 4.158 25 C -0.182 4.182 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.234 0.766 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.728 -14.041 -12.432 19.121 hybrid contribution -0.207 1.757 -0.368 1.807 sum 3.521 -12.285 -12.800 18.087 Atomic orbital electron populations 1.21721 0.94958 1.02483 1.01505 1.21555 0.96180 0.94722 1.02658 1.22333 0.86969 0.98747 1.00094 1.61681 1.07642 1.08653 1.47687 1.22352 0.96321 0.97863 0.91246 1.21624 0.93668 0.97141 1.02842 1.21564 1.00631 0.94999 0.97709 1.21532 0.90804 1.01337 1.00633 1.21579 0.97091 0.89216 0.95403 0.91423 1.20944 0.78350 0.82811 0.89059 1.90644 1.50861 1.73246 1.30016 1.46320 1.62310 1.07119 1.19996 1.18314 0.89947 0.88549 0.85424 0.98675 1.21577 1.29042 0.93645 1.14284 0.91142 1.25764 0.94858 1.03352 0.94443 1.70052 1.33729 1.35265 1.16337 0.85384 0.78999 0.78863 0.77323 1.19691 1.21288 1.18876 1.21768 0.98143 0.95911 1.00013 1.21743 0.98677 0.97658 1.00135 0.90821 0.94074 0.92406 0.89974 0.92172 0.92125 0.95538 0.88859 0.94182 0.88860 0.92161 0.90773 0.90015 0.90772 0.92726 0.76608 0.92643 0.91123 0.94310 0.93844 0.93106 0.95795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.11 -2.61 5.43 30.60 0.17 -2.44 16 3 C 0.05 1.35 4.57 86.31 0.39 1.75 16 4 N -0.53 -15.16 4.36 -875.52 -3.82 -18.98 16 5 C 0.05 0.99 5.03 86.33 0.43 1.42 16 6 C -0.12 -2.00 6.09 30.65 0.19 -1.81 16 7 C -0.11 -2.02 6.00 30.67 0.18 -1.84 16 8 C -0.10 -2.74 5.36 30.65 0.16 -2.57 16 9 C 0.08 2.38 2.23 44.19 0.10 2.47 16 10 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 11 C 0.50 20.28 4.73 87.66 0.41 20.70 16 12 O -0.57 -27.70 12.40 -3.04 -0.04 -27.74 16 13 N -0.71 -29.75 5.02 -446.08 -2.24 -31.99 16 14 C 0.28 14.61 2.24 44.25 0.10 14.71 16 15 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 16 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.02 0.86 5.29 84.65 0.45 1.31 16 19 N -0.92 -52.88 11.29 21.45 0.24 -52.64 16 20 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 C -0.12 -5.98 5.45 30.60 0.17 -5.82 16 25 C -0.12 -5.75 8.51 71.98 0.61 -5.13 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.50 6.19 -2.39 -0.01 1.48 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 2.28 4.39 -2.39 -0.01 2.27 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.66 5.84 -2.39 -0.01 1.64 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.40 14.41 8.54 -92.71 -0.79 13.62 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.05 2.23 3.97 -2.39 -0.01 2.22 16 47 H 0.02 1.18 7.85 -2.39 -0.02 1.17 16 Total: -1.00 -66.09 351.98 0.62 -65.47 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.14 Total: 30.18 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.31 Total: -8.59 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.82 Total: -103.61 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.04 Total: -27.74 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.09 0.62 -65.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320227732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.858 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds